Rorug01G0000600

Belongs to the precorrin methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002225
Physical Location & Seq
Forward (+)
224323 .. 232724
8402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0000600.1

Sequence Viewer

Length: 1155 bp
ATGCTCTATGCCAGTCTCTGTCACACTGACATTGTCGTGTCCAAAGGATACCCAATTCCTCTTTTCCCTCGCGTTCTTGGACATGAGGGCGTCGGTGTGGTAGAGAGCATCGGAGAAGAAGTAAACACAGAGGATTTCAAACAAGGAGACATCGTGAAACCAACGTTTGTTTCAGAATGTCAAGAATGCGAGAATTGCTTGTCAGGCAAGTCCAACCTGTGCCTGAAATATCCGTTTACCTTGACCGGTCTAATGCTCGATGGTACTTCAAGAATGTCGACTGTCAAGGGACAAAAGATGTTGTACCACATATTTTCTTACTCCACATGGTCCGAGTACACGGTTGTTAATGTCAATTACCTTCTCAAGCTCCACAATTGGGGTGCTCATCGTACTACTACACTACCTCTGTCCCACGCTAGCTTCCTCTCATGTGGATTCTCTACCGGATTTGGGGCTTCTTGGAAGGAAGCAAAGATTGAAAGAGGGTCAACTGTTGCAGTTATTGGTCTTGGTGCTATTGGATTAGGGGGTAAAGGAACAACAATTGTGCTAGGACCCTCAGGAGTAACACCCGTTCAGATTGATTATCTCTCCCTGATGAGTGGTAGAACCTTGAAAGGGTCCGTGTTTGGAGGTCTCAAAGCCAAAACCGACCTTCCCATTCTCATCAACAAATGCATGAATATGGAAATGCAATTGGATGAACTCTTGACTCATGAAGTTCCTCTCGTAGATATTAACCAAGCATTTGAACTCTTAAAGCAGCCAAATTGTGTGAAGAGCGCGTCGATACGCGTTCGTGGATATGTGGATCACGGAAATCGGAAATTCTCTCTATTCTCTCTCCTCCGGCAACCCGACCCGAGGCGAAACCCGGCATCCCGACCCGACTGGATCTTTCATCTCCGGCCACCTCCGGCGACGGGACAAGCCAAGGAACACTCAGACTTGCCTCGCCGACTTCCCTGTAGTGGTGGGTTGATCGGTGCCTCGCCGGAAGTAGCAGATTGGAGCGCCCAAAGTTTATGTTTTCGGGATCCGACCGGTTTTCCGATCTCCGGCGACTTCCCGGCCTATCTCTTCGCGGTTCTGGGATTGCCTCTTCCTGCTGATCATCCCCATATAGGCCTTGCATCACGATTTGGGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120
Pfam Domains
Protein Families
TP_methylase

Protein Analysis

384

Amino Acids

41.85

Weight (kDa)

8.27

Isoelectric Point (pI)

38.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 3 - 124 1.8e-16 Alcohol dehydrogenase GroES-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 989
AccI GTMKAC 1 cut(s) 278
AccII CGCG 4 cut(s) 72, 788, 798, 1088
AciI CCGC 1 cut(s) 1088
AclI AACGTT 1 cut(s) 164
AclWI GGATC 4 cut(s) 822, 905, 1034, 1047
AcoI YGGCCR 1 cut(s) 911
AcsI RAATTY 1 cut(s) 830
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 4 cut(s) 265, 305, 338, 394
AfiI CCNNNNNNNGG 8 cut(s) 379, 453, 621, 867, 926, 974, 1061, 1127
AflIII ACRYGT 1 cut(s) 796
AgeI ACCGGT 2 cut(s) 245, 1046
AgsI TTSAA 5 cut(s) 139, 270, 482, 619, 755
AjuI GAANNNNNNNTTGG 2 cut(s) 154, 186
AluBI AGCT 2 cut(s) 370, 423
AluI AGCT 2 cut(s) 370, 423
Alw21I GWGCWC 1 cut(s) 388
Alw26I GTCTC 3 cut(s) 20, 141, 644
AlwI GGATC 4 cut(s) 822, 905, 1034, 1047
AlwNI CAGNNNCTG 1 cut(s) 18
Ama87I CYCGRG 1 cut(s) 865
AoxI GGCC 3 cut(s) 911, 1074, 1129
ApeKI GCWGC 1 cut(s) 766
ApoI RAATTY 1 cut(s) 830
AsiGI ACCGGT 2 cut(s) 245, 1046
AspLEI GCGC 2 cut(s) 788, 1019
AspS9I GGNCC 3 cut(s) 330, 557, 624
AsuC2I CCSGG 2 cut(s) 878, 1073
AsuNHI GCTAGC 1 cut(s) 419
AvaI CYCGRG 1 cut(s) 865
AvaII GGWCC 3 cut(s) 330, 557, 624
AxyI CCTNAGG 1 cut(s) 562
BamHI GGATCC 1 cut(s) 1039
BanI GGYRCC 1 cut(s) 989
Bbv12I GWGCWC 1 cut(s) 388
BbvI GCAGC 1 cut(s) 778
BccI CCATC 1 cut(s) 254
BciVI GTATCC 1 cut(s) 41
BclI TGATCA 1 cut(s) 1114
BcnI CCSGG 2 cut(s) 878, 1073
BcoDI GTCTC 3 cut(s) 20, 141, 644
BfaI CTAG 2 cut(s) 420, 554
BfmI CTRYAG 1 cut(s) 970
BfoI RGCGCY 1 cut(s) 1020
BfuI GTATCC 1 cut(s) 41
BisI GCNGC 1 cut(s) 767
BlsI GCNGC 1 cut(s) 768
Bme1390I CCNGG 2 cut(s) 878, 1073
Bme18I GGWCC 3 cut(s) 330, 557, 624
BmeT110I CYCGRG 1 cut(s) 865
BmgT120I GGNCC 3 cut(s) 330, 557, 624
BmiI GGNNCC 4 cut(s) 559, 625, 991, 1041
BmrFI CCNGG 2 cut(s) 878, 1073
BmsI GCATC 3 cut(s) 117, 890, 1145
BmtI GCTAGC 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 2 cut(s) 878, 1073
BsaHI GRCGYC 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 644
BsaJI CCNNGG 2 cut(s) 866, 936
BsaWI WCCGGW 3 cut(s) 245, 446, 1046
BsaXI ACNNNNNCTCC 4 cut(s) 105, 135, 138, 168
Bsc4I CCNNNNNNNGG 8 cut(s) 379, 453, 621, 867, 926, 974, 1061, 1127
Bse118I RCCGGY 2 cut(s) 245, 1046
Bse1I ACTGG 2 cut(s) 12, 899
Bse21I CCTNAGG 1 cut(s) 562
BseDI CCNNGG 2 cut(s) 866, 936
BseGI GGATG 3 cut(s) 709, 881, 1117
BseLI CCNNNNNNNGG 8 cut(s) 379, 453, 621, 867, 926, 974, 1061, 1127
BseMII CTCAG 2 cut(s) 576, 960
BseNI ACTGG 2 cut(s) 12, 899
BseRI GAGGAG 1 cut(s) 839
BseXI GCAGC 1 cut(s) 778
Bsh1236I CGCG 4 cut(s) 72, 788, 798, 1088
Bsh1285I CGRYCG 1 cut(s) 1047
BshFI GGCC 3 cut(s) 913, 1076, 1131
BshNI GGYRCC 1 cut(s) 989
BshTI ACCGGT 2 cut(s) 245, 1046
BsiEI CGRYCG 1 cut(s) 1047
BsiHKAI GWGCWC 1 cut(s) 388
BsiHKCI CYCGRG 1 cut(s) 865
BslFI GGGAC 3 cut(s) 303, 397, 942
BslI CCNNNNNNNGG 8 cut(s) 379, 453, 621, 867, 926, 974, 1061, 1127
BsmAI GTCTC 3 cut(s) 20, 141, 644
BsmFI GGGAC 3 cut(s) 303, 397, 942
BsmI GAATGC 1 cut(s) 191
BsnI GGCC 3 cut(s) 913, 1076, 1131
Bso31I GGTCTC 1 cut(s) 644
BsoBI CYCGRG 1 cut(s) 865
Bsp1286I GDGCHC 1 cut(s) 388
Bsp143I GATC 6 cut(s) 814, 897, 984, 1039, 1056, 1114
BspACI CCGC 1 cut(s) 1088
BspANI GGCC 3 cut(s) 913, 1076, 1131
BspCNI CTCAG 2 cut(s) 575, 959
BspFNI CGCG 4 cut(s) 72, 788, 798, 1088
BspHI TCATGA 1 cut(s) 718
BspLI GGNNCC 4 cut(s) 559, 625, 991, 1041
BspOI GCTAGC 1 cut(s) 423
BspPI GGATC 4 cut(s) 822, 905, 1034, 1047
BspQI GCTCTTC 1 cut(s) 776
BspT107I GGYRCC 1 cut(s) 989
BspTNI GGTCTC 1 cut(s) 644
BsrFI RCCGGY 2 cut(s) 245, 1046
BsrI ACTGG 2 cut(s) 12, 899
BssAI RCCGGY 2 cut(s) 245, 1046
BssECI CCNNGG 2 cut(s) 866, 936
BssMI GATC 6 cut(s) 814, 897, 984, 1039, 1056, 1114
BssNI GRCGYC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 936
Bst4CI ACNGT 3 cut(s) 283, 343, 496
Bst6I CTCTTC 3 cut(s) 776, 1088, 1110
BstACI GRCGYC 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 421
BstDEI CTNAG 2 cut(s) 562, 946
BstF5I GGATG 3 cut(s) 709, 881, 1117
BstFNI CGCG 4 cut(s) 72, 788, 798, 1088
BstH2I RGCGCY 1 cut(s) 1020
BstHHI GCGC 2 cut(s) 788, 1019
BstKTI GATC 6 cut(s) 817, 900, 987, 1042, 1059, 1117
BstMAI GTCTC 3 cut(s) 20, 141, 644
BstMBI GATC 6 cut(s) 814, 897, 984, 1039, 1056, 1114
BstMCI CGRYCG 1 cut(s) 1047
BstMWI GCNNNNNNNGC 2 cut(s) 195, 204
BstSCI CCNGG 2 cut(s) 876, 1071
BstSFI CTRYAG 1 cut(s) 970
BstUI CGCG 4 cut(s) 72, 788, 798, 1088
BstV1I GCAGC 1 cut(s) 778
BstX2I RGATCY 2 cut(s) 897, 1039
BstYI RGATCY 2 cut(s) 897, 1039
Bsu36I CCTNAGG 1 cut(s) 562
BsuI GTATCC 1 cut(s) 41
BsuRI GGCC 3 cut(s) 913, 1076, 1131
BtsCI GGATG 3 cut(s) 709, 881, 1117
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 421
CaiI CAGNNNCTG 1 cut(s) 18
CciI TCATGA 1 cut(s) 718
CfoI GCGC 2 cut(s) 788, 1019
Cfr10I RCCGGY 2 cut(s) 245, 1046
Cfr13I GGNCC 3 cut(s) 330, 557, 624
CseI GACGC 2 cut(s) 79, 777
Csp6I GTAC 4 cut(s) 264, 304, 337, 393
CspAI ACCGGT 2 cut(s) 245, 1046
CviAII CATG 5 cut(s) 83, 327, 432, 682, 719
CviJI RGCY 9 cut(s) 370, 423, 458, 647, 769, 913, 935, 1076, 1131
CviKI_1 RGCY 9 cut(s) 370, 423, 458, 647, 769, 913, 935, 1076, 1131
CviQI GTAC 4 cut(s) 264, 304, 337, 393
DdeI CTNAG 2 cut(s) 562, 946
DpnI GATC 6 cut(s) 816, 899, 986, 1041, 1058, 1116
DpnII GATC 6 cut(s) 814, 897, 984, 1039, 1056, 1114
EaeI YGGCCR 1 cut(s) 911
Eam1104I CTCTTC 3 cut(s) 776, 1088, 1110
EarI CTCTTC 3 cut(s) 776, 1088, 1110
Eco130I CCWWGG 1 cut(s) 936
Eco147I AGGCCT 1 cut(s) 1131
Eco31I GGTCTC 1 cut(s) 644
Eco47I GGWCC 3 cut(s) 330, 557, 624
Eco81I CCTNAGG 1 cut(s) 562
Eco88I CYCGRG 1 cut(s) 865
EcoO109I RGGNCCY 1 cut(s) 557
EcoT14I CCWWGG 1 cut(s) 936
EcoT22I ATGCAT 1 cut(s) 683
ErhI CCWWGG 1 cut(s) 936
FaeI CATG 5 cut(s) 86, 330, 435, 685, 722
FaqI GGGAC 3 cut(s) 303, 397, 942
FatI CATG 5 cut(s) 82, 326, 431, 681, 718
FbaI TGATCA 1 cut(s) 1114
FblI GTMKAC 1 cut(s) 278
Fnu4HI GCNGC 1 cut(s) 767
FokI GGATG 3 cut(s) 716, 868, 1104
Fsp4HI GCNGC 1 cut(s) 767
FspBI CTAG 2 cut(s) 420, 554
GlaI GCGC 2 cut(s) 787, 1018
GluI GCNGC 1 cut(s) 767
HaeII RGCGCY 1 cut(s) 1020
HaeIII GGCC 3 cut(s) 913, 1076, 1131
HgaI GACGC 2 cut(s) 79, 777
HhaI GCGC 2 cut(s) 788, 1019
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 5 cut(s) 86, 330, 435, 685, 722
Hin6I GCGC 2 cut(s) 786, 1017
HinP1I GCGC 2 cut(s) 786, 1017
HincII GTYRAC 2 cut(s) 279, 492
HindII GTYRAC 2 cut(s) 279, 492
HinfI GANTC 2 cut(s) 438, 715
Hpy166II GTNNAC 5 cut(s) 124, 237, 279, 339, 492
Hpy188I TCNGA 8 cut(s) 113, 175, 334, 582, 828, 949, 1044, 1056
Hpy188III TCNNGA 9 cut(s) 154, 182, 270, 564, 712, 719, 885, 1037, 1140
Hpy8I GTNNAC 5 cut(s) 124, 237, 279, 339, 492
Hpy99I CGWCG 3 cut(s) 95, 793, 928
HpyAV CCTTC 3 cut(s) 371, 460, 668
HpyCH4III ACNGT 3 cut(s) 283, 343, 496
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 4 cut(s) 500, 681, 697, 1136
HpyF10VI GCNNNNNNNGC 2 cut(s) 195, 204
HpyF3I CTNAG 2 cut(s) 562, 946
HpySE526I ACGT 1 cut(s) 164
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 5 cut(s) 86, 330, 435, 685, 722
HspAI GCGC 2 cut(s) 786, 1017
Ksp22I TGATCA 1 cut(s) 1114
Kzo9I GATC 6 cut(s) 814, 897, 984, 1039, 1056, 1114
LguI GCTCTTC 1 cut(s) 776
LmnI GCTCC 2 cut(s) 375, 1014
Lsp1109I GCAGC 1 cut(s) 778
LweI GCATC 3 cut(s) 117, 890, 1145
MaeI CTAG 2 cut(s) 420, 554
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 2 cut(s) 20, 568
MalI GATC 6 cut(s) 816, 899, 986, 1041, 1058, 1116
MboI GATC 6 cut(s) 814, 897, 984, 1039, 1056, 1114
MboII GAAGA 4 cut(s) 128, 793, 1075, 1097
MfeI CAATTG 3 cut(s) 376, 546, 698
MflI RGATCY 2 cut(s) 897, 1039
MhlI GDGCHC 1 cut(s) 388
MluCI AATT 8 cut(s) 54, 193, 355, 376, 546, 698, 772, 830
MluI ACGCGT 1 cut(s) 796
MlyI GAGTC 1 cut(s) 709
MmeI TCCRAC 2 cut(s) 237, 1067
Mph1103I ATGCAT 1 cut(s) 683
MseI TTAA 3 cut(s) 348, 741, 761
MslI CAYNNNNRTG 2 cut(s) 35, 686
MspR9I CCNGG 2 cut(s) 878, 1073
MunI CAATTG 3 cut(s) 376, 546, 698
Mva1269I GAATGC 1 cut(s) 191
MvnI CGCG 4 cut(s) 72, 788, 798, 1088
MwoI GCNNNNNNNGC 2 cut(s) 195, 204
NciI CCSGG 2 cut(s) 878, 1073
NdeII GATC 6 cut(s) 814, 897, 984, 1039, 1056, 1114
NheI GCTAGC 1 cut(s) 419
NlaIII CATG 5 cut(s) 86, 330, 435, 685, 722
NlaIV GGNNCC 4 cut(s) 559, 625, 991, 1041
NmuCI GTSAC 1 cut(s) 20
NsiI ATGCAT 1 cut(s) 683
PagI TCATGA 1 cut(s) 718
PceI AGGCCT 1 cut(s) 1131
PciSI GCTCTTC 1 cut(s) 776
PctI GAATGC 1 cut(s) 191
PfeI GAWTC 1 cut(s) 438
PflFI GACNNNGTC 1 cut(s) 32
PinAI ACCGGT 2 cut(s) 245, 1046
PkrI GCNGC 1 cut(s) 768
PleI GAGTC 1 cut(s) 709
PpsI GAGTC 1 cut(s) 709
PpuMI RGGWCCY 1 cut(s) 557
Psp1406I AACGTT 1 cut(s) 164
Psp5II RGGWCCY 1 cut(s) 557
PspN4I GGNNCC 4 cut(s) 559, 625, 991, 1041
PspPI GGNCC 3 cut(s) 330, 557, 624
PspPPI RGGWCCY 1 cut(s) 557
PsrI GAACNNNNNNTAC 2 cut(s) 561, 593
PstNI CAGNNNCTG 1 cut(s) 18
PsuI RGATCY 2 cut(s) 897, 1039
PsyI GACNNNGTC 1 cut(s) 32
RsaI GTAC 4 cut(s) 265, 305, 338, 394
RsaNI GTAC 4 cut(s) 264, 304, 337, 393
RseI CAYNNNNRTG 2 cut(s) 35, 686
SalI GTCGAC 1 cut(s) 277
SapI GCTCTTC 1 cut(s) 776
SaqAI TTAA 3 cut(s) 348, 741, 761
SatI GCNGC 1 cut(s) 767
Sau3AI GATC 6 cut(s) 814, 897, 984, 1039, 1056, 1114
Sau96I GGNCC 3 cut(s) 330, 557, 624
SchI GAGTC 1 cut(s) 709
ScrFI CCNGG 2 cut(s) 878, 1073
SduI GDGCHC 1 cut(s) 388
SfaNI GCATC 3 cut(s) 117, 890, 1145
SfcI CTRYAG 1 cut(s) 970
SinI GGWCC 3 cut(s) 330, 557, 624
SmiMI CAYNNNNRTG 2 cut(s) 35, 686
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 8 cut(s) 54, 193, 355, 376, 546, 698, 772, 830
SseBI AGGCCT 1 cut(s) 1131
SsiI CCGC 1 cut(s) 1088
SspMI CTAG 2 cut(s) 420, 554
StuI AGGCCT 1 cut(s) 1131
StyD4I CCNGG 2 cut(s) 876, 1071
StyI CCWWGG 1 cut(s) 936
TaaI ACNGT 3 cut(s) 283, 343, 496
TaiI ACGT 1 cut(s) 167
TaqI TCGA 3 cut(s) 258, 278, 791
TasI AATT 8 cut(s) 54, 193, 355, 376, 546, 698, 772, 830
TatI WGTACW 1 cut(s) 336
TfiI GAWTC 1 cut(s) 438
Tru1I TTAA 3 cut(s) 348, 741, 761
Tru9I TTAA 3 cut(s) 348, 741, 761
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 1 cut(s) 766
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 4 cut(s) 698, 720, 735, 893
TspGWI ACGGA 3 cut(s) 222, 616, 834
TspRI CASTG 1 cut(s) 31
Tth111I GACNNNGTC 1 cut(s) 32
VpaK11BI GGWCC 3 cut(s) 330, 557, 624
XapI RAATTY 1 cut(s) 830
XmiI GTMKAC 1 cut(s) 278
XspI CTAG 2 cut(s) 420, 554
Zsp2I ATGCAT 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.