Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038479.1

Orthogroup ID

OG0002225

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 669

Gene Structure 668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038479.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

cagcccactctattctctgatgatgctgattctgatctcacaaggcagaatgacattgctttgcagctaccagagctgagaaagctgcttcaggtgctaagagagaagagagagagggaaggagggtgtggtggaggaggaggcaagtgtgggcctggcaatgtcttcttggtcggcactggccctggggaccctgaactcctcacattgaaggctgtcagagttgtacagagtgctgatttattgttgtatgataggttggtgtccaatcatgtgttggattttgttgcctctgatgctagacttgtctatgtgggcaagactgctgggtaccatagcagaacccaggaggagatacatgaactgctactgagttttgctgaagct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

129

Amino Acids

14.02

Weight (kDa)

5.13

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40850 AT5G40850 AT5G40850
fragaria_vesca	FvH4_7g00480 FvH4_7g00480 FvH4_7g00480 FvH4_7g00480 FvH4_7g00480
malus_domestica	MD07G1002800.v1.1
prunus_persica	Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.I005100_v2.0.a1
pyrus_communis	pycom02g26670 pycom07g00280
rosa_chinensis	RchiOBHm_Chr1g0314251 RchiOBHm_Chr4g0408791 RchiOBHm_Chr6g0277781
rosa_laevigata	RLG00000013272 RLG00000030770
rosa_multiflora	Rmu_sc0002211.1_g000012 Rmu_sc0006114.1_g000007 Rmu_sc0008256.1_g000002 Rmu_sc0013258.1_g000003 Rmu_sc0017573.1_g000002 Rmu_sc0038479.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332000 Rroxscaffold_7G00190980
rosa_rugosa	Rorug01G0000600 Rorug06G0110800 Rorug06G0110900
rosa_samantha	Rh1BG002400 Rh1BG268900 Rh1CG009600 Rh1CG009900 Rh4BG149300 Rh6AG221700 Rh6BG225200 Rh6CG227900 Rh6DG218900
rosa_wichuraiana	Rw1G000410 Rw6G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	330
AccB1I	GGYRCC	1 cut(s)	330
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	2 cut(s)	228, 332
AgsI	TTSAA	1 cut(s)	211
AjnI	CCWGG	3 cut(s)	154, 184, 345
AluBI	AGCT	4 cut(s)	67, 76, 85, 386
AluI	AGCT	4 cut(s)	67, 76, 85, 386
AoxI	GGCC	2 cut(s)	152, 181
ApeKI	GCWGC	2 cut(s)	64, 85
Asp718I	GGTACC	1 cut(s)	330
AspS9I	GGNCC	3 cut(s)	152, 182, 190
AvaII	GGWCC	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	157
BbvI	GCAGC	2 cut(s)	72, 76
BciT130I	CCWGG	3 cut(s)	156, 186, 347
BfaI	CTAG	1 cut(s)	300
BisI	GCNGC	2 cut(s)	65, 86
BlsI	GCNGC	2 cut(s)	66, 87
Bme1390I	CCNGG	3 cut(s)	156, 186, 347
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	3 cut(s)	152, 182, 190
BmiI	GGNNCC	3 cut(s)	191, 192, 332
BmrFI	CCNGG	3 cut(s)	156, 186, 347
BmsI	GCATC	2 cut(s)	13, 286
BpiI	GAAGAC	1 cut(s)	157
BsaBI	GATNNNNATC	1 cut(s)	33
BsaJI	CCNNGG	3 cut(s)	184, 185, 345
Bse1I	ACTGG	1 cut(s)	184
Bse3DI	GCAATG	2 cut(s)	54, 166
Bse8I	GATNNNNATC	1 cut(s)	33
BseBI	CCWGG	3 cut(s)	156, 186, 347
BseDI	CCNNGG	3 cut(s)	184, 185, 345
BseJI	GATNNNNATC	1 cut(s)	33
BseMI	GCAATG	2 cut(s)	54, 166
BseMII	CTCAG	2 cut(s)	68, 362
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	4 cut(s)	150, 153, 191, 365
BseXI	GCAGC	2 cut(s)	72, 76
BseYI	CCCAGC	1 cut(s)	326
BshFI	GGCC	2 cut(s)	154, 183
BshNI	GGYRCC	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	2 cut(s)	154, 183
Bsp1407I	TGTACA	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	34
BspANI	GGCC	2 cut(s)	154, 183
BspCNI	CTCAG	2 cut(s)	69, 363
BspLI	GGNNCC	3 cut(s)	191, 192, 332
BspT107I	GGYRCC	1 cut(s)	330
BsrDI	GCAATG	2 cut(s)	54, 166
BsrGI	TGTACA	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	3 cut(s)	184, 185, 345
BssMI	GATC	1 cut(s)	34
Bst2UI	CCWGG	3 cut(s)	156, 186, 347
Bst6I	CTCTTC	1 cut(s)	101
BstAUI	TGTACA	1 cut(s)	226
BstDEI	CTNAG	3 cut(s)	77, 98, 371
BstKTI	GATC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	4 cut(s)	73, 82, 94, 296
BstNI	CCWGG	3 cut(s)	156, 186, 347
BstSCI	CCNGG	3 cut(s)	154, 184, 345
BstV1I	GCAGC	2 cut(s)	72, 76
BstV2I	GAAGAC	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	154, 183
BtsIMutI	CAGTG	1 cut(s)	177
Cfr13I	GGNCC	3 cut(s)	152, 182, 190
Csp6I	GTAC	2 cut(s)	227, 331
CviAII	CATG	2 cut(s)	272, 359
CviJI	RGCY	8 cut(s)	4, 67, 76, 85, 154, 183, 215, 386
CviKI_1	RGCY	8 cut(s)	4, 67, 76, 85, 154, 183, 215, 386
CviQI	GTAC	2 cut(s)	227, 331
DdeI	CTNAG	3 cut(s)	77, 98, 371
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	74
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRII	CCWGG	3 cut(s)	154, 184, 345
FaeI	CATG	2 cut(s)	275, 362
FaiI	YATR	5 cut(s)	252, 273, 312, 336, 360
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	2 cut(s)	271, 358
Fnu4HI	GCNGC	2 cut(s)	65, 86
Fsp4HI	GCNGC	2 cut(s)	65, 86
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	2 cut(s)	65, 86
GsaI	CCCAGC	1 cut(s)	330
HaeIII	GGCC	2 cut(s)	154, 183
Hin1II	CATG	2 cut(s)	275, 362
HinfI	GANTC	1 cut(s)	29
Hpy188I	TCNGA	4 cut(s)	19, 34, 221, 295
HpyAV	CCTTC	2 cut(s)	113, 205
HpyCH4V	TGCA	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	4 cut(s)	73, 82, 94, 296
HpyF3I	CTNAG	3 cut(s)	77, 98, 371
Hsp92II	CATG	2 cut(s)	275, 362
KflI	GGGWCCC	1 cut(s)	190
KpnI	GGTACC	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	34
Lsp1109I	GCAGC	2 cut(s)	72, 76
LweI	GCATC	2 cut(s)	13, 286
MaeI	CTAG	1 cut(s)	300
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	2 cut(s)	118, 157
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	8 cut(s)	108, 116, 128, 131, 134, 212, 301, 343
MspR9I	CCNGG	3 cut(s)	156, 186, 347
MvaI	CCWGG	3 cut(s)	156, 186, 347
MwoI	GCNNNNNNNGC	4 cut(s)	73, 82, 94, 296
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	2 cut(s)	275, 362
NlaIV	GGNNCC	3 cut(s)	191, 192, 332
PasI	CCCWGGG	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	66, 87
PpuMI	RGGWCCY	1 cut(s)	190
Psp5II	RGGWCCY	1 cut(s)	190
Psp6I	CCWGG	3 cut(s)	154, 184, 345
PspFI	CCCAGC	1 cut(s)	326
PspGI	CCWGG	3 cut(s)	154, 184, 345
PspN4I	GGNNCC	3 cut(s)	191, 192, 332
PspPI	GGNCC	3 cut(s)	152, 182, 190
PspPPI	RGGWCCY	1 cut(s)	190
RsaI	GTAC	2 cut(s)	228, 332
RsaNI	GTAC	2 cut(s)	227, 331
SatI	GCNGC	2 cut(s)	65, 86
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	3 cut(s)	152, 182, 190
ScrFI	CCNGG	3 cut(s)	156, 186, 347
SetI	ASST	5 cut(s)	69, 78, 87, 96, 260
SfaNI	GCATC	2 cut(s)	13, 286
SinI	GGWCC	1 cut(s)	190
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	3 cut(s)	154, 184, 345
TatI	WGTACW	1 cut(s)	226
TfiI	GAWTC	1 cut(s)	29
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	2 cut(s)	64, 85
TspDTI	ATGAA	1 cut(s)	375
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	190
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.