FvH4_7g00480

Belongs to the precorrin methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002225
Physical Location & Seq
Reverse (-)
1108501 .. 1114774
6274 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g00480.t3

Sequence Viewer

Length: 1131 bp
ATGGCTCTTGTCTCCAGGCTTCAATCTCTGTCTTCTACTCTGTCTTCCACCCATTTCAGAAAACCCAGTTCCTTCAACCCTCAACCCATTTGCTCTCTTCACTTCAACTCCTCCCCTTCTTATACTTCCCCTTTCACAGAGAAGCACTCTATTGAGAGGTACCAGAGAGACCAATGGCTTTACAGTAACCAACTGAACCGAACTCTCCCTCCTCCTCCTGATTCTGATGCTGATTCTGATTTCGCAAGGCAGAACGACATTGCTTTGCAGCTACCGGAGCTCAGAAAGCTGGTTGAGGTGCTGAGAGAGAAGAGAGAAAAGAGAGAGAGGGAAGGAGGGTGCGGTGGAGGCAAGTGTGGGCCTGGCAATGTCTTCTTAGTGGGCACTGGCCCTGGGGACTCTGAACTCCTGACATTGAAGGCTGTCAGAATCATTCAGAGTGCTGATTTATTGTTGTATGATAGATTGGTGTCCAATGATGTCTTGGATTTTGTTGCCTCTGATGCTAGACTTGTCTATGTGGGCAAGACTGCTGGCTACCATAGCAGAACCCAGGAGGAGATACATGAATTGCTACTGAGTTTTGCTGAAGCTGGAGCTACTGTTGTGAGATTAAAAGGAGGGGATCCATTGGTGTTTGGAAGGGGTGGGGAGGAGATGGATTTTTTGCAACAGCAAGGAATTCAAGTGCAAGTTATTCCAGGTATCACTGCTGCTTCTGGCATAGCAGCAGAGCTCGGGATCCCATTAACTCACAGAGGTGTTGCAAATAGTGTCAGATTTCTGACTGGGCACTCCAGGAAGGGAGGAACAGATCCTCTTTTTGTGGCAGAGAATGCAGCTGATCCTGATTCCACCTTAGTGGTATACATGGGTTTGTCGACTCTCCCTTCTCTTGCTCAAAAGTTGGTCCATCATGGTCTGCCACCTACAACACCAGCTGTTGCAGTTGAGCGAGGGACCACACCTCAACAACGCATGGTCTTTGCAGAGCTCAAGGATCTTGCCAATGAAATTACATCAGCAGAGTTGATATCACCAACGCTCATAGTCATTGGGAAAGTAGTTGCACTTTCACCATTGTGGCCACATACTTCGAATGAAGTGTCCTCTCTTGTCGGAGCCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120
Pfam Domains
Protein Families
TP_methylase

Protein Analysis

377

Amino Acids

40.65

Weight (kDa)

6.08

Isoelectric Point (pI)

38.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TP_methylase PF00590 124 - 330 1.6e-50 Tetrapyrrole (Corrin/Porphyrin) Methylases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 159
AccB1I GGYRCC 1 cut(s) 159
AccI GTMKAC 2 cut(s) 867, 881
AciI CCGC 1 cut(s) 342
AclWI GGATC 7 cut(s) 620, 633, 736, 749, 809, 839, 1008
AcoI YGGCCR 1 cut(s) 1085
AcsI RAATTY 1 cut(s) 681
AcuI CTGAAG 1 cut(s) 609
AfaI GTAC 1 cut(s) 161
AgsI TTSAA 5 cut(s) 23, 76, 106, 418, 686
AjnI CCWGG 6 cut(s) 14, 361, 391, 552, 700, 797
AleI CACNNNNGTG 3 cut(s) 759, 860, 1081
AloI GAACNNNNNNTCC 2 cut(s) 193, 225
AluBI AGCT 9 cut(s) 271, 280, 289, 593, 599, 736, 842, 941, 994
AluI AGCT 9 cut(s) 271, 280, 289, 593, 599, 736, 842, 941, 994
Alw21I GWGCWC 3 cut(s) 282, 738, 996
Alw26I GTCTC 2 cut(s) 16, 162
AlwI GGATC 7 cut(s) 620, 633, 736, 749, 809, 839, 1008
Ama87I CYCGRG 1 cut(s) 737
AoxI GGCC 3 cut(s) 359, 388, 1085
ApeKI GCWGC 4 cut(s) 268, 713, 728, 839
ApoI RAATTY 1 cut(s) 681
ArsI GACNNNNNNTTYG 2 cut(s) 1091, 1123
Asp718I GGTACC 1 cut(s) 159
AspS9I GGNCC 4 cut(s) 359, 389, 910, 960
AsuHPI GGTGA 2 cut(s) 1029, 1068
AsuII TTCGAA 1 cut(s) 1097
AvaI CYCGRG 1 cut(s) 737
AvaII GGWCC 2 cut(s) 910, 960
BaeGI GKGCMC 2 cut(s) 386, 795
BalI TGGCCA 1 cut(s) 1087
BamHI GGATCC 2 cut(s) 625, 741
BanI GGYRCC 1 cut(s) 159
BanII GRGCYC 3 cut(s) 282, 738, 996
BbsI GAAGAC 3 cut(s) 24, 36, 364
Bbv12I GWGCWC 3 cut(s) 282, 738, 996
BbvI GCAGC 4 cut(s) 280, 700, 740, 851
BccI CCATC 2 cut(s) 652, 921
BciT130I CCWGG 6 cut(s) 16, 363, 393, 554, 702, 799
BcoDI GTCTC 2 cut(s) 16, 162
BfaI CTAG 1 cut(s) 507
BisI GCNGC 4 cut(s) 269, 714, 729, 840
BlsI GCNGC 4 cut(s) 270, 715, 730, 841
Bme1390I CCNGG 6 cut(s) 16, 363, 393, 554, 702, 799
Bme18I GGWCC 2 cut(s) 910, 960
BmeT110I CYCGRG 1 cut(s) 737
BmgT120I GGNCC 4 cut(s) 359, 389, 910, 960
BmiI GGNNCC 5 cut(s) 161, 627, 743, 961, 1123
BmrFI CCNGG 6 cut(s) 16, 363, 393, 554, 702, 799
BmrI ACTGGG 2 cut(s) 60, 798
BmsI GCATC 2 cut(s) 217, 493
BmuI ACTGGG 2 cut(s) 60, 798
BpiI GAAGAC 3 cut(s) 24, 36, 364
BplI GAGNNNNNCTC 2 cut(s) 131, 163
BpmI CTGGAG 2 cut(s) 615, 781
Bpu14I TTCGAA 1 cut(s) 1097
BpuEI CTTGAG 1 cut(s) 980
BsaI GGTCTC 1 cut(s) 162
BsaJI CCNNGG 3 cut(s) 391, 392, 552
BsaWI WCCGGW 1 cut(s) 274
BsaXI ACNNNNNCTCC 6 cut(s) 92, 122, 193, 223, 588, 618
Bse1I ACTGG 3 cut(s) 66, 391, 793
Bse3DI GCAATG 2 cut(s) 258, 373
BseBI CCWGG 6 cut(s) 16, 363, 393, 554, 702, 799
BseDI CCNNGG 3 cut(s) 391, 392, 552
BseMI GCAATG 2 cut(s) 258, 373
BseMII CTCAG 3 cut(s) 293, 295, 569
BseNI ACTGG 3 cut(s) 66, 391, 793
BseRI GAGGAG 5 cut(s) 100, 201, 204, 572, 668
BseSI GKGCMC 2 cut(s) 386, 795
BseXI GCAGC 4 cut(s) 280, 700, 740, 851
BshFI GGCC 3 cut(s) 361, 390, 1087
BshNI GGYRCC 1 cut(s) 159
BsiHKAI GWGCWC 3 cut(s) 282, 738, 996
BsiHKCI CYCGRG 1 cut(s) 737
BsiSI CCGG 1 cut(s) 275
BslFI GGGAC 2 cut(s) 410, 973
BsmAI GTCTC 2 cut(s) 16, 162
BsmFI GGGAC 2 cut(s) 410, 973
BsmI GAATGC 1 cut(s) 841
BsnI GGCC 3 cut(s) 361, 390, 1087
Bso31I GGTCTC 1 cut(s) 162
BsoBI CYCGRG 1 cut(s) 737
Bsp119I TTCGAA 1 cut(s) 1097
Bsp1286I GDGCHC 5 cut(s) 282, 386, 738, 795, 996
Bsp143I GATC 5 cut(s) 625, 741, 814, 844, 1000
BspACI CCGC 1 cut(s) 342
BspANI GGCC 3 cut(s) 361, 390, 1087
BspCNI CTCAG 3 cut(s) 294, 294, 570
BspLI GGNNCC 5 cut(s) 161, 627, 743, 961, 1123
BspPI GGATC 7 cut(s) 620, 633, 736, 749, 809, 839, 1008
BspT104I TTCGAA 1 cut(s) 1097
BspT107I GGYRCC 1 cut(s) 159
BspTNI GGTCTC 1 cut(s) 162
BsrDI GCAATG 2 cut(s) 258, 373
BsrI ACTGG 3 cut(s) 66, 391, 793
BssECI CCNNGG 3 cut(s) 391, 392, 552
BssMI GATC 5 cut(s) 625, 741, 814, 844, 1000
BssNAI GTATAC 1 cut(s) 868
Bst1107I GTATAC 1 cut(s) 868
Bst2UI CCWGG 6 cut(s) 16, 363, 393, 554, 702, 799
Bst4CI ACNGT 2 cut(s) 185, 604
Bst6I CTCTTC 2 cut(s) 102, 305
BstAPI GCANNNNNTGC 1 cut(s) 836
BstBI TTCGAA 1 cut(s) 1097
BstC8I GCNNGC 1 cut(s) 535
BstDEI CTNAG 5 cut(s) 281, 302, 376, 578, 859
BstKTI GATC 5 cut(s) 628, 744, 817, 847, 1003
BstMAI GTCTC 2 cut(s) 16, 162
BstMBI GATC 5 cut(s) 625, 741, 814, 844, 1000
BstMWI GCNNNNNNNGC 6 cut(s) 277, 286, 348, 503, 543, 836
BstNI CCWGG 6 cut(s) 16, 363, 393, 554, 702, 799
BstSCI CCNGG 6 cut(s) 14, 361, 391, 552, 700, 797
BstSLI GKGCMC 2 cut(s) 386, 795
BstV1I GCAGC 4 cut(s) 280, 700, 740, 851
BstV2I GAAGAC 3 cut(s) 24, 36, 364
BstX2I RGATCY 4 cut(s) 625, 741, 814, 1000
BstXI CCANNNNNNTGG 1 cut(s) 862
BstYI RGATCY 4 cut(s) 625, 741, 814, 1000
BstZ17I GTATAC 1 cut(s) 868
BsuRI GGCC 3 cut(s) 361, 390, 1087
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 2 cut(s) 384, 708
Cac8I GCNNGC 1 cut(s) 535
Cfr13I GGNCC 4 cut(s) 359, 389, 910, 960
Csp6I GTAC 1 cut(s) 160
CviAII CATG 4 cut(s) 566, 871, 917, 979
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 5 cut(s) 281, 302, 376, 578, 859
DpnI GATC 5 cut(s) 627, 743, 816, 846, 1002
DpnII GATC 5 cut(s) 625, 741, 814, 844, 1000
EaeI YGGCCR 1 cut(s) 1085
Eam1104I CTCTTC 2 cut(s) 102, 305
EarI CTCTTC 2 cut(s) 102, 305
Ecl136II GAGCTC 3 cut(s) 280, 736, 994
Eco24I GRGCYC 3 cut(s) 282, 738, 996
Eco31I GGTCTC 1 cut(s) 162
Eco32I GATATC 1 cut(s) 1035
Eco47I GGWCC 2 cut(s) 910, 960
Eco53kI GAGCTC 3 cut(s) 280, 736, 994
Eco57I CTGAAG 1 cut(s) 609
Eco88I CYCGRG 1 cut(s) 737
EcoICRI GAGCTC 3 cut(s) 280, 736, 994
EcoRI GAATTC 1 cut(s) 681
EcoRII CCWGG 6 cut(s) 14, 361, 391, 552, 700, 797
EcoRV GATATC 1 cut(s) 1035
EcoT38I GRGCYC 3 cut(s) 282, 738, 996
FaeI CATG 4 cut(s) 569, 874, 920, 982
FaqI GGGAC 2 cut(s) 410, 973
FatI CATG 4 cut(s) 565, 870, 916, 978
FblI GTMKAC 2 cut(s) 867, 881
Fnu4HI GCNGC 4 cut(s) 269, 714, 729, 840
FriOI GRGCYC 3 cut(s) 282, 738, 996
Fsp4HI GCNGC 4 cut(s) 269, 714, 729, 840
FspBI CTAG 1 cut(s) 507
GluI GCNGC 4 cut(s) 269, 714, 729, 840
GsuI CTGGAG 2 cut(s) 615, 781
HaeIII GGCC 3 cut(s) 361, 390, 1087
HapII CCGG 1 cut(s) 275
Hin1II CATG 4 cut(s) 569, 874, 920, 982
HincII GTYRAC 1 cut(s) 882
HindII GTYRAC 1 cut(s) 882
HinfI GANTC 6 cut(s) 221, 233, 398, 429, 851, 883
HpaII CCGG 1 cut(s) 275
HphI GGTGA 2 cut(s) 1029, 1068
Hpy166II GTNNAC 2 cut(s) 868, 882
Hpy188III TCNNGA 4 cut(s) 218, 409, 739, 848
Hpy8I GTNNAC 2 cut(s) 868, 882
HpyAV CCTTC 7 cut(s) 82, 126, 326, 412, 636, 796, 900
HpyCH4III ACNGT 2 cut(s) 185, 604
HpyCH4V TGCA 8 cut(s) 268, 670, 691, 767, 839, 947, 989, 1070
HpyF10VI GCNNNNNNNGC 6 cut(s) 277, 286, 348, 503, 543, 836
HpyF3I CTNAG 5 cut(s) 281, 302, 376, 578, 859
Hsp92II CATG 4 cut(s) 569, 874, 920, 982
KpnI GGTACC 1 cut(s) 163
Kzo9I GATC 5 cut(s) 625, 741, 814, 844, 1000
LmnI GCTCC 3 cut(s) 277, 596, 1121
Lsp1109I GCAGC 4 cut(s) 280, 700, 740, 851
LweI GCATC 2 cut(s) 217, 493
MaeI CTAG 1 cut(s) 507
MaeIII GTNAC 1 cut(s) 185
MalI GATC 5 cut(s) 627, 743, 816, 846, 1002
MboI GATC 5 cut(s) 625, 741, 814, 844, 1000
MboII GAAGA 5 cut(s) 24, 36, 89, 322, 364
MflI RGATCY 4 cut(s) 625, 741, 814, 1000
MhlI GDGCHC 5 cut(s) 282, 386, 738, 795, 996
MlsI TGGCCA 1 cut(s) 1087
MluCI AATT 3 cut(s) 569, 681, 1014
MluNI TGGCCA 1 cut(s) 1087
MlyI GAGTC 2 cut(s) 392, 877
MmeI TCCRAC 1 cut(s) 1099
Mox20I TGGCCA 1 cut(s) 1087
MscI TGGCCA 1 cut(s) 1087
MseI TTAA 2 cut(s) 614, 749
MslI CAYNNNNRTG 3 cut(s) 759, 860, 1081
Msp20I TGGCCA 1 cut(s) 1087
MspA1I CMGCKG 2 cut(s) 842, 941
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 6 cut(s) 16, 363, 393, 554, 702, 799
Mva1269I GAATGC 1 cut(s) 841
MvaI CCWGG 6 cut(s) 16, 363, 393, 554, 702, 799
MwoI GCNNNNNNNGC 6 cut(s) 277, 286, 348, 503, 543, 836
NdeII GATC 5 cut(s) 625, 741, 814, 844, 1000
NlaIII CATG 4 cut(s) 569, 874, 920, 982
NlaIV GGNNCC 5 cut(s) 161, 627, 743, 961, 1123
NspV TTCGAA 1 cut(s) 1097
OliI CACNNNNGTG 3 cut(s) 759, 860, 1081
PasI CCCWGGG 1 cut(s) 392
PctI GAATGC 1 cut(s) 841
PfeI GAWTC 4 cut(s) 221, 233, 429, 851
PfoI TCCNGGA 1 cut(s) 797
PkrI GCNGC 4 cut(s) 270, 715, 730, 841
PleI GAGTC 2 cut(s) 392, 877
PpsI GAGTC 2 cut(s) 392, 877
Psp124BI GAGCTC 3 cut(s) 282, 738, 996
Psp6I CCWGG 6 cut(s) 14, 361, 391, 552, 700, 797
PspGI CCWGG 6 cut(s) 14, 361, 391, 552, 700, 797
PspN4I GGNNCC 5 cut(s) 161, 627, 743, 961, 1123
PspPI GGNCC 4 cut(s) 359, 389, 910, 960
PsuI RGATCY 4 cut(s) 625, 741, 814, 1000
PvuII CAGCTG 2 cut(s) 842, 941
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 3 cut(s) 759, 860, 1081
SacI GAGCTC 3 cut(s) 282, 738, 996
SalI GTCGAC 1 cut(s) 880
SaqAI TTAA 2 cut(s) 614, 749
SatI GCNGC 4 cut(s) 269, 714, 729, 840
Sau3AI GATC 5 cut(s) 625, 741, 814, 844, 1000
Sau96I GGNCC 4 cut(s) 359, 389, 910, 960
SchI GAGTC 2 cut(s) 392, 877
ScrFI CCNGG 6 cut(s) 16, 363, 393, 554, 702, 799
SduI GDGCHC 5 cut(s) 282, 386, 738, 795, 996
SfaNI GCATC 2 cut(s) 217, 493
SfuI TTCGAA 1 cut(s) 1097
SinI GGWCC 2 cut(s) 910, 960
SmiMI CAYNNNNRTG 3 cut(s) 759, 860, 1081
SmlI CTYRAG 1 cut(s) 995
SmoI CTYRAG 1 cut(s) 995
Sse9I AATT 3 cut(s) 569, 681, 1014
SsiI CCGC 1 cut(s) 342
SspMI CTAG 1 cut(s) 507
SstI GAGCTC 3 cut(s) 282, 738, 996
StyD4I CCNGG 6 cut(s) 14, 361, 391, 552, 700, 797
TaaI ACNGT 2 cut(s) 185, 604
TaqI TCGA 2 cut(s) 881, 1097
TasI AATT 3 cut(s) 569, 681, 1014
TfiI GAWTC 4 cut(s) 221, 233, 429, 851
Tru1I TTAA 2 cut(s) 614, 749
Tru9I TTAA 2 cut(s) 614, 749
TscAI CASTG 2 cut(s) 391, 715
TseI GCWGC 4 cut(s) 268, 713, 728, 839
TspDTI ATGAA 3 cut(s) 582, 1026, 1116
TspRI CASTG 2 cut(s) 391, 715
VpaK11BI GGWCC 2 cut(s) 910, 960
XapI RAATTY 1 cut(s) 681
XcmI CCANNNNNNNNNTGG 1 cut(s) 481
XmiI GTMKAC 2 cut(s) 867, 881
XspI CTAG 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.