Rh6AG221700

Belongs to the precorrin methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002225
Physical Location & Seq
Reverse (-)
39946528 .. 39951093
4566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG221700.1

Sequence Viewer

Length: 708 bp
ATGGCTCTTGTGAGTAGGCTTCAATCTCTGTCTTCCTCTTTGTCTTCCACCCATTTCAGAAAACCCAACTGCTTAAACCCTCAACCCATTTGCTCTCTACACTTCAACTCCCCTTCTTACACTTCTCCTTTCACAGAGAAGCATTCAATTGAGAGGTACCAGAGAGACCGGTGGCTATACAATAACCAATTGGAGCAACCCACTGTAATCTCTCTCCCTCCTGATTCTGATTTCACAAGGCAGAATGACATTGCTTTGCAGCTACCAGAACTGAGAAAGCTGCTTCAGGTGCTGCGAGAGAAGAGAGAGAGGGAAGGAGGGTGTGGTGGAGGCAAGTGTGGGCCTGGCAACGTCTTCTTGGTGGGCACTGGCCCTGGGGACCCTGAACTCCTGACATTGAAGGCTGTCAGAGTTATTCAGAGTGCTGACTTATTGTTATATGATAGGTTGGTGTCCAATGATGTGTTGGATTTTGTTGCCTCTGATGCTAGACTTGTCTATGTGGGCAAGACTGCTGGGTACCATAGCAGAACCCAGGAGGAGATACATGAATTGCTACTGAGTTTTGCTGAAGCCGGAGCTACTGTTGTGAGATTAAAAGGAGGGGATCCACTGGTGTTTGGAAGGGGTGGAGAGGAGATGGATTTTTTGCAACAGCAAGGAATTCAAGTGCAAGTTATTCCTGGTACAATAATGAAGTATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120
Pfam Domains
Protein Families
TP_methylase

Protein Analysis

235

Amino Acids

26.16

Weight (kDa)

6.52

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TP_methylase PF00590 118 - 229 2.4e-30 Tetrapyrrole (Corrin/Porphyrin) Methylases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 156, 519
AccB1I GGYRCC 2 cut(s) 156, 519
AclWI GGATC 2 cut(s) 602, 615
AcsI RAATTY 1 cut(s) 663
AcuI CTGAAG 2 cut(s) 269, 591
AfaI GTAC 3 cut(s) 158, 521, 688
AgeI ACCGGT 1 cut(s) 168
AgsI TTSAA 5 cut(s) 23, 106, 147, 400, 668
AjnI CCWGG 4 cut(s) 343, 373, 534, 682
AluBI AGCT 3 cut(s) 262, 280, 581
AluI AGCT 3 cut(s) 262, 280, 581
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 2 cut(s) 602, 615
AlwNI CAGNNNCTG 1 cut(s) 292
AoxI GGCC 2 cut(s) 341, 370
ApeKI GCWGC 3 cut(s) 259, 280, 292
ApoI RAATTY 1 cut(s) 663
AsiGI ACCGGT 1 cut(s) 168
Asp718I GGTACC 2 cut(s) 156, 519
AspS9I GGNCC 3 cut(s) 341, 371, 379
AvaII GGWCC 1 cut(s) 379
BaeGI GKGCMC 1 cut(s) 368
BamHI GGATCC 1 cut(s) 607
BanI GGYRCC 2 cut(s) 156, 519
BbsI GAAGAC 3 cut(s) 24, 36, 346
BbvI GCAGC 3 cut(s) 267, 271, 279
BccI CCATC 1 cut(s) 634
BciT130I CCWGG 4 cut(s) 345, 375, 536, 684
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 1 cut(s) 489
BisI GCNGC 3 cut(s) 260, 281, 293
BlsI GCNGC 3 cut(s) 261, 282, 294
Bme1390I CCNGG 4 cut(s) 345, 375, 536, 684
Bme18I GGWCC 1 cut(s) 379
BmgT120I GGNCC 3 cut(s) 341, 371, 379
BmiI GGNNCC 5 cut(s) 158, 380, 381, 521, 609
BmrFI CCNGG 4 cut(s) 345, 375, 536, 684
BmsI GCATC 1 cut(s) 475
BpiI GAAGAC 3 cut(s) 24, 36, 346
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 3 cut(s) 373, 374, 534
BsaWI WCCGGW 1 cut(s) 168
BsaXI ACNNNNNCTCC 4 cut(s) 92, 122, 570, 600
Bse118I RCCGGY 1 cut(s) 168
Bse1I ACTGG 2 cut(s) 373, 618
Bse3DI GCAATG 1 cut(s) 249
BseBI CCWGG 4 cut(s) 345, 375, 536, 684
BseDI CCNNGG 3 cut(s) 373, 374, 534
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 2 cut(s) 263, 551
BseNI ACTGG 2 cut(s) 373, 618
BseRI GAGGAG 2 cut(s) 554, 650
BseSI GKGCMC 1 cut(s) 368
BseXI GCAGC 3 cut(s) 267, 271, 279
BseYI CCCAGC 1 cut(s) 515
BshFI GGCC 2 cut(s) 343, 372
BshNI GGYRCC 2 cut(s) 156, 519
BshTI ACCGGT 1 cut(s) 168
BsiSI CCGG 2 cut(s) 169, 576
BslFI GGGAC 1 cut(s) 392
BsmAI GTCTC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 392
BsmI GAATGC 1 cut(s) 142
BsnI GGCC 2 cut(s) 343, 372
Bso31I GGTCTC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 368
Bsp143I GATC 1 cut(s) 607
BspANI GGCC 2 cut(s) 343, 372
BspCNI CTCAG 2 cut(s) 264, 552
BspLI GGNNCC 5 cut(s) 158, 380, 381, 521, 609
BspPI GGATC 2 cut(s) 602, 615
BspT107I GGYRCC 2 cut(s) 156, 519
BspTNI GGTCTC 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 168
BsrI ACTGG 2 cut(s) 373, 618
BssAI RCCGGY 1 cut(s) 168
BssECI CCNNGG 3 cut(s) 373, 374, 534
BssMI GATC 1 cut(s) 607
Bst2UI CCWGG 4 cut(s) 345, 375, 536, 684
Bst4CI ACNGT 2 cut(s) 205, 586
Bst6I CTCTTC 1 cut(s) 296
BstDEI CTNAG 2 cut(s) 272, 560
BstKTI GATC 1 cut(s) 610
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 1 cut(s) 607
BstMWI GCNNNNNNNGC 2 cut(s) 289, 485
BstNI CCWGG 4 cut(s) 345, 375, 536, 684
BstSCI CCNGG 4 cut(s) 343, 373, 534, 682
BstSLI GKGCMC 1 cut(s) 368
BstV1I GCAGC 3 cut(s) 267, 271, 279
BstV2I GAAGAC 3 cut(s) 24, 36, 346
BstX2I RGATCY 1 cut(s) 607
BstYI RGATCY 1 cut(s) 607
BsuRI GGCC 2 cut(s) 343, 372
BtsIMutI CAGTG 3 cut(s) 201, 366, 611
CaiI CAGNNNCTG 1 cut(s) 292
Cfr10I RCCGGY 1 cut(s) 168
Cfr13I GGNCC 3 cut(s) 341, 371, 379
Csp6I GTAC 3 cut(s) 157, 520, 687
CspAI ACCGGT 1 cut(s) 168
CviAII CATG 1 cut(s) 548
CviQI GTAC 3 cut(s) 157, 520, 687
DdeI CTNAG 2 cut(s) 272, 560
DpnI GATC 1 cut(s) 609
DpnII GATC 1 cut(s) 607
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Eco31I GGTCTC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 379
Eco57I CTGAAG 2 cut(s) 269, 591
EcoO109I RGGNCCY 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 663
EcoRII CCWGG 4 cut(s) 343, 373, 534, 682
FaeI CATG 1 cut(s) 551
FaiI YATR 6 cut(s) 178, 439, 441, 501, 525, 549
FaqI GGGAC 1 cut(s) 392
FatI CATG 1 cut(s) 547
Fnu4HI GCNGC 3 cut(s) 260, 281, 293
Fsp4HI GCNGC 3 cut(s) 260, 281, 293
FspBI CTAG 1 cut(s) 489
GluI GCNGC 3 cut(s) 260, 281, 293
GsaI CCCAGC 1 cut(s) 519
HaeIII GGCC 2 cut(s) 343, 372
HapII CCGG 2 cut(s) 169, 576
Hin1II CATG 1 cut(s) 551
HinfI GANTC 1 cut(s) 224
HpaII CCGG 2 cut(s) 169, 576
Hpy188I TCNGA 5 cut(s) 59, 229, 410, 420, 484
Hpy188III TCNNGA 2 cut(s) 221, 391
HpyAV CCTTC 4 cut(s) 123, 308, 394, 618
HpyCH4III ACNGT 2 cut(s) 205, 586
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 3 cut(s) 259, 652, 673
HpyF10VI GCNNNNNNNGC 2 cut(s) 289, 485
HpyF3I CTNAG 2 cut(s) 272, 560
HpySE526I ACGT 1 cut(s) 351
Hsp92II CATG 1 cut(s) 551
KflI GGGWCCC 1 cut(s) 379
KpnI GGTACC 2 cut(s) 160, 523
Kzo9I GATC 1 cut(s) 607
LmnI GCTCC 2 cut(s) 193, 578
Lsp1109I GCAGC 3 cut(s) 267, 271, 279
LweI GCATC 1 cut(s) 475
MaeI CTAG 1 cut(s) 489
MaeII ACGT 1 cut(s) 351
MalI GATC 1 cut(s) 609
MboI GATC 1 cut(s) 607
MboII GAAGA 4 cut(s) 24, 36, 313, 346
MfeI CAATTG 2 cut(s) 147, 188
MflI RGATCY 1 cut(s) 607
MhlI GDGCHC 1 cut(s) 368
MluCI AATT 4 cut(s) 147, 188, 551, 663
MmeI TCCRAC 1 cut(s) 447
MseI TTAA 2 cut(s) 74, 596
MspI CCGG 2 cut(s) 169, 576
MspR9I CCNGG 4 cut(s) 345, 375, 536, 684
MunI CAATTG 2 cut(s) 147, 188
Mva1269I GAATGC 1 cut(s) 142
MvaI CCWGG 4 cut(s) 345, 375, 536, 684
MwoI GCNNNNNNNGC 2 cut(s) 289, 485
NdeII GATC 1 cut(s) 607
NlaIII CATG 1 cut(s) 551
NlaIV GGNNCC 5 cut(s) 158, 380, 381, 521, 609
PasI CCCWGGG 1 cut(s) 374
PctI GAATGC 1 cut(s) 142
PfeI GAWTC 1 cut(s) 224
PinAI ACCGGT 1 cut(s) 168
PkrI GCNGC 3 cut(s) 261, 282, 294
PpuMI RGGWCCY 1 cut(s) 379
Psp5II RGGWCCY 1 cut(s) 379
Psp6I CCWGG 4 cut(s) 343, 373, 534, 682
PspFI CCCAGC 1 cut(s) 515
PspGI CCWGG 4 cut(s) 343, 373, 534, 682
PspN4I GGNNCC 5 cut(s) 158, 380, 381, 521, 609
PspPI GGNCC 3 cut(s) 341, 371, 379
PspPPI RGGWCCY 1 cut(s) 379
PstNI CAGNNNCTG 1 cut(s) 292
PsuI RGATCY 1 cut(s) 607
RsaI GTAC 3 cut(s) 158, 521, 688
RsaNI GTAC 3 cut(s) 157, 520, 687
SaqAI TTAA 2 cut(s) 74, 596
SatI GCNGC 3 cut(s) 260, 281, 293
Sau3AI GATC 1 cut(s) 607
Sau96I GGNCC 3 cut(s) 341, 371, 379
ScrFI CCNGG 4 cut(s) 345, 375, 536, 684
SduI GDGCHC 1 cut(s) 368
SetI ASST 7 cut(s) 158, 264, 282, 291, 354, 449, 583
SfaNI GCATC 1 cut(s) 475
SinI GGWCC 1 cut(s) 379
Sse9I AATT 4 cut(s) 147, 188, 551, 663
SspMI CTAG 1 cut(s) 489
StyD4I CCNGG 4 cut(s) 343, 373, 534, 682
TaaI ACNGT 2 cut(s) 205, 586
TaiI ACGT 1 cut(s) 354
TasI AATT 4 cut(s) 147, 188, 551, 663
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 2 cut(s) 74, 596
Tru9I TTAA 2 cut(s) 74, 596
TscAI CASTG 3 cut(s) 208, 373, 618
TseI GCWGC 3 cut(s) 259, 280, 292
TspDTI ATGAA 1 cut(s) 564
TspRI CASTG 3 cut(s) 208, 373, 618
VpaK11BI GGWCC 1 cut(s) 379
XapI RAATTY 1 cut(s) 663
XcmI CCANNNNNNNNNTGG 1 cut(s) 463
XspI CTAG 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.