Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002211.1

Orthogroup ID

OG0002225

Physical Location & Seq

Genomic Coordinates Forward (+)

34077 .. 37324

Gene Structure 3248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002211.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

atggctcttgtgagtaggtttcaatctctgtcttcctctttgtcttccacccatttcagaaaacccaactgcttaaaccctgaacccatttgctctctacacttcaactccccttcttacacttctcctttcacagagaagcattcaattgagaggtaccagagagaccggtggctatacaataaccaattggagcaacccactgtaatctctctccctcctgattctgatttcacaaggcagaatgacattgctttgcagctaccagaactgagaaagctgcttcaggtgctgcgagagaagagagagagggaaggagggtgtggtggaggcaagtgtgggcctggcaatgtcttcttggtgggcactggccctggggaccctgaactcctgacattgaaggctgtcagagttattcagagtgctgacttattgttgtatgataggttggtgtccaatgatgtgttggattttgttgcctctgatgctagacttgtctatgtgggcaagactgctgggtaccatagcagaacccaggaggagatacatgaattgctactgagttttgctgaagctggagctactgttgtgagattaaaaggaggggatccactggtgtttggaaggggtggagaggagatggattttttgcaacagcaaggaattcaagtgcaagttattcctggtatcactgctgcttctgggatagcagcagagcttgggatcccattaactcatagaggtgttgcaaatagtgtaagatttctgaccgggcactccaggaagggaggaacagatcctctttttgtgacagagaatgcagctgaccctgattcgaccttggtggtatacatgggtttgtcgactctcccttctcttgctcaaaagttggtccatcatggtctgccaccaacaacaccagctgttgcaattgagcgagggaccacacctcaacagcgcatggtctttgcagaactgaaggatcttgccaatgaaattacatcagcagagttagtatcaccaacactcatcgtcattgggaaagtagttgcactttcgccattgtggccacataatttgaatgaagtgacctctcttgttggagccatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

370

Amino Acids

40.16

Weight (kDa)

6.08

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40850 AT5G40850 AT5G40850
fragaria_vesca	FvH4_7g00480 FvH4_7g00480 FvH4_7g00480 FvH4_7g00480 FvH4_7g00480
malus_domestica	MD07G1002800.v1.1
prunus_persica	Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.I005100_v2.0.a1
pyrus_communis	pycom02g26670 pycom07g00280
rosa_chinensis	RchiOBHm_Chr1g0314251 RchiOBHm_Chr4g0408791 RchiOBHm_Chr6g0277781
rosa_laevigata	RLG00000013272 RLG00000030770
rosa_multiflora	Rmu_sc0002211.1_g000012 Rmu_sc0006114.1_g000007 Rmu_sc0008256.1_g000002 Rmu_sc0013258.1_g000003 Rmu_sc0017573.1_g000002 Rmu_sc0038479.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332000 Rroxscaffold_7G00190980
rosa_rugosa	Rorug01G0000600 Rorug06G0110800 Rorug06G0110900
rosa_samantha	Rh1BG002400 Rh1BG268900 Rh1CG009600 Rh1CG009900 Rh4BG149300 Rh6AG221700 Rh6BG225200 Rh6CG227900 Rh6DG218900
rosa_wichuraiana	Rw1G000410 Rw6G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	156, 519
AccB1I	GGYRCC	2 cut(s)	156, 519
AccI	GTMKAC	2 cut(s)	849, 863
AclWI	GGATC	6 cut(s)	602, 615, 718, 731, 791, 990
AcoI	YGGCCR	1 cut(s)	1067
AcsI	RAATTY	1 cut(s)	663
AcuI	CTGAAG	3 cut(s)	269, 591, 998
AfaI	GTAC	2 cut(s)	158, 521
AgeI	ACCGGT	1 cut(s)	168
AgsI	TTSAA	6 cut(s)	23, 106, 147, 400, 668, 1081
AjnI	CCWGG	5 cut(s)	343, 373, 534, 682, 779
AluBI	AGCT	7 cut(s)	262, 280, 575, 581, 718, 824, 923
AluI	AGCT	7 cut(s)	262, 280, 575, 581, 718, 824, 923
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	6 cut(s)	602, 615, 718, 731, 791, 990
AlwNI	CAGNNNCTG	1 cut(s)	292
AoxI	GGCC	3 cut(s)	341, 370, 1067
ApeKI	GCWGC	6 cut(s)	259, 280, 292, 695, 710, 821
ApoI	RAATTY	1 cut(s)	663
AsiGI	ACCGGT	1 cut(s)	168
Asp718I	GGTACC	2 cut(s)	156, 519
AspLEI	GCGC	1 cut(s)	960
AspS9I	GGNCC	5 cut(s)	341, 371, 379, 892, 942
AsuC2I	CCSGG	1 cut(s)	772
AsuHPI	GGTGA	1 cut(s)	1011
AvaII	GGWCC	3 cut(s)	379, 892, 942
BaeGI	GKGCMC	2 cut(s)	368, 777
BalI	TGGCCA	1 cut(s)	1069
BamHI	GGATCC	2 cut(s)	607, 723
BanI	GGYRCC	2 cut(s)	156, 519
BbsI	GAAGAC	3 cut(s)	24, 36, 346
BbvI	GCAGC	6 cut(s)	267, 271, 279, 682, 722, 833
BccI	CCATC	2 cut(s)	634, 903
BciT130I	CCWGG	5 cut(s)	345, 375, 536, 684, 781
BcnI	CCSGG	1 cut(s)	772
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	1 cut(s)	489
BglI	GCCNNNNNGGC	1 cut(s)	1066
BisI	GCNGC	6 cut(s)	260, 281, 293, 696, 711, 822
BlsI	GCNGC	6 cut(s)	261, 282, 294, 697, 712, 823
Bme1390I	CCNGG	6 cut(s)	345, 375, 536, 684, 772, 781
Bme18I	GGWCC	3 cut(s)	379, 892, 942
BmgT120I	GGNCC	5 cut(s)	341, 371, 379, 892, 942
BmiI	GGNNCC	8 cut(s)	158, 380, 381, 521, 609, 725, 943, 1105
BmrFI	CCNGG	6 cut(s)	345, 375, 536, 684, 772, 781
BmsI	GCATC	1 cut(s)	475
BpiI	GAAGAC	3 cut(s)	24, 36, 346
BpmI	CTGGAG	2 cut(s)	597, 763
BpuMI	CCSGG	1 cut(s)	772
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	4 cut(s)	373, 374, 534, 840
BsaWI	WCCGGW	1 cut(s)	168
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 122, 570, 600
Bse118I	RCCGGY	1 cut(s)	168
Bse1I	ACTGG	2 cut(s)	373, 618
Bse3DI	GCAATG	2 cut(s)	249, 355
BseBI	CCWGG	5 cut(s)	345, 375, 536, 684, 781
BseDI	CCNNGG	4 cut(s)	373, 374, 534, 840
BseMI	GCAATG	2 cut(s)	249, 355
BseMII	CTCAG	2 cut(s)	263, 551
BseNI	ACTGG	2 cut(s)	373, 618
BseRI	GAGGAG	2 cut(s)	554, 650
BseSI	GKGCMC	2 cut(s)	368, 777
BseXI	GCAGC	6 cut(s)	267, 271, 279, 682, 722, 833
BseYI	CCCAGC	1 cut(s)	515
BshFI	GGCC	3 cut(s)	343, 372, 1069
BshNI	GGYRCC	2 cut(s)	156, 519
BshTI	ACCGGT	1 cut(s)	168
BsiSI	CCGG	2 cut(s)	169, 771
BslFI	GGGAC	2 cut(s)	392, 955
BsmAI	GTCTC	1 cut(s)	159
BsmFI	GGGAC	2 cut(s)	392, 955
BsmI	GAATGC	2 cut(s)	142, 823
BsnI	GGCC	3 cut(s)	343, 372, 1069
Bso31I	GGTCTC	1 cut(s)	159
Bsp1286I	GDGCHC	2 cut(s)	368, 777
Bsp143I	GATC	4 cut(s)	607, 723, 796, 982
BspANI	GGCC	3 cut(s)	343, 372, 1069
BspCNI	CTCAG	2 cut(s)	264, 552
BspLI	GGNNCC	8 cut(s)	158, 380, 381, 521, 609, 725, 943, 1105
BspPI	GGATC	6 cut(s)	602, 615, 718, 731, 791, 990
BspT107I	GGYRCC	2 cut(s)	156, 519
BspTNI	GGTCTC	1 cut(s)	159
BsrDI	GCAATG	2 cut(s)	249, 355
BsrFI	RCCGGY	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	373, 618
BssAI	RCCGGY	1 cut(s)	168
BssECI	CCNNGG	4 cut(s)	373, 374, 534, 840
BssMI	GATC	4 cut(s)	607, 723, 796, 982
BssNAI	GTATAC	1 cut(s)	850
BssT1I	CCWWGG	1 cut(s)	840
Bst1107I	GTATAC	1 cut(s)	850
Bst2UI	CCWGG	5 cut(s)	345, 375, 536, 684, 781
Bst4CI	ACNGT	2 cut(s)	205, 586
Bst6I	CTCTTC	1 cut(s)	296
BstDEI	CTNAG	2 cut(s)	272, 560
BstHHI	GCGC	1 cut(s)	960
BstKTI	GATC	4 cut(s)	610, 726, 799, 985
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	4 cut(s)	607, 723, 796, 982
BstMWI	GCNNNNNNNGC	3 cut(s)	289, 485, 1066
BstNI	CCWGG	5 cut(s)	345, 375, 536, 684, 781
BstSCI	CCNGG	6 cut(s)	343, 373, 534, 682, 770, 779
BstSLI	GKGCMC	2 cut(s)	368, 777
BstV1I	GCAGC	6 cut(s)	267, 271, 279, 682, 722, 833
BstV2I	GAAGAC	3 cut(s)	24, 36, 346
BstX2I	RGATCY	4 cut(s)	607, 723, 796, 982
BstYI	RGATCY	4 cut(s)	607, 723, 796, 982
BstZ17I	GTATAC	1 cut(s)	850
BsuRI	GGCC	3 cut(s)	343, 372, 1069
BtsI	GCAGTG	1 cut(s)	690
BtsIMutI	CAGTG	4 cut(s)	201, 366, 611, 690
CaiI	CAGNNNCTG	1 cut(s)	292
CfoI	GCGC	1 cut(s)	960
Cfr10I	RCCGGY	1 cut(s)	168
Cfr13I	GGNCC	5 cut(s)	341, 371, 379, 892, 942
Csp6I	GTAC	2 cut(s)	157, 520
CspAI	ACCGGT	1 cut(s)	168
CspCI	CAANNNNNGTGG	2 cut(s)	1059, 1094
CviAII	CATG	4 cut(s)	548, 853, 899, 961
CviQI	GTAC	2 cut(s)	157, 520
DdeI	CTNAG	2 cut(s)	272, 560
DpnI	GATC	4 cut(s)	609, 725, 798, 984
DpnII	GATC	4 cut(s)	607, 723, 796, 982
EaeI	YGGCCR	1 cut(s)	1067
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	840
Eco31I	GGTCTC	1 cut(s)	159
Eco47I	GGWCC	3 cut(s)	379, 892, 942
Eco57I	CTGAAG	3 cut(s)	269, 591, 998
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRI	GAATTC	1 cut(s)	663
EcoRII	CCWGG	5 cut(s)	343, 373, 534, 682, 779
EcoT14I	CCWWGG	1 cut(s)	840
ErhI	CCWWGG	1 cut(s)	840
FaeI	CATG	4 cut(s)	551, 856, 902, 964
FaqI	GGGAC	2 cut(s)	392, 955
FatI	CATG	4 cut(s)	547, 852, 898, 960
FblI	GTMKAC	2 cut(s)	849, 863
Fnu4HI	GCNGC	6 cut(s)	260, 281, 293, 696, 711, 822
Fsp4HI	GCNGC	6 cut(s)	260, 281, 293, 696, 711, 822
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	1 cut(s)	959
GluI	GCNGC	6 cut(s)	260, 281, 293, 696, 711, 822
GsaI	CCCAGC	1 cut(s)	519
GsuI	CTGGAG	2 cut(s)	597, 763
HaeIII	GGCC	3 cut(s)	343, 372, 1069
HapII	CCGG	2 cut(s)	169, 771
HhaI	GCGC	1 cut(s)	960
Hin1II	CATG	4 cut(s)	551, 856, 902, 964
Hin6I	GCGC	1 cut(s)	958
HinP1I	GCGC	1 cut(s)	958
HincII	GTYRAC	1 cut(s)	864
HindII	GTYRAC	1 cut(s)	864
HinfI	GANTC	3 cut(s)	224, 833, 865
HpaII	CCGG	2 cut(s)	169, 771
HphI	GGTGA	1 cut(s)	1011
Hpy166II	GTNNAC	2 cut(s)	850, 864
Hpy188I	TCNGA	6 cut(s)	59, 229, 410, 420, 484, 768
Hpy188III	TCNNGA	2 cut(s)	221, 391
Hpy8I	GTNNAC	2 cut(s)	850, 864
HpyAV	CCTTC	7 cut(s)	123, 308, 394, 618, 778, 882, 973
HpyCH4III	ACNGT	2 cut(s)	205, 586
HpyCH4V	TGCA	8 cut(s)	259, 652, 673, 749, 821, 929, 971, 1052
HpyF10VI	GCNNNNNNNGC	3 cut(s)	289, 485, 1066
HpyF3I	CTNAG	2 cut(s)	272, 560
Hsp92II	CATG	4 cut(s)	551, 856, 902, 964
HspAI	GCGC	1 cut(s)	958
KflI	GGGWCCC	1 cut(s)	379
KpnI	GGTACC	2 cut(s)	160, 523
Kzo9I	GATC	4 cut(s)	607, 723, 796, 982
LmnI	GCTCC	3 cut(s)	193, 578, 1103
Lsp1109I	GCAGC	6 cut(s)	267, 271, 279, 682, 722, 833
LweI	GCATC	1 cut(s)	475
MaeI	CTAG	1 cut(s)	489
MaeIII	GTNAC	2 cut(s)	808, 1087
MalI	GATC	4 cut(s)	609, 725, 798, 984
MboI	GATC	4 cut(s)	607, 723, 796, 982
MboII	GAAGA	4 cut(s)	24, 36, 313, 346
MfeI	CAATTG	3 cut(s)	147, 188, 930
MflI	RGATCY	4 cut(s)	607, 723, 796, 982
MhlI	GDGCHC	2 cut(s)	368, 777
MlsI	TGGCCA	1 cut(s)	1069
MluCI	AATT	7 cut(s)	147, 188, 551, 663, 930, 996, 1075
MluNI	TGGCCA	1 cut(s)	1069
MlyI	GAGTC	1 cut(s)	859
MmeI	TCCRAC	2 cut(s)	447, 1081
Mox20I	TGGCCA	1 cut(s)	1069
MscI	TGGCCA	1 cut(s)	1069
MseI	TTAA	3 cut(s)	74, 596, 731
MslI	CAYNNNNRTG	1 cut(s)	741
Msp20I	TGGCCA	1 cut(s)	1069
MspA1I	CMGCKG	2 cut(s)	824, 923
MspI	CCGG	2 cut(s)	169, 771
MspR9I	CCNGG	6 cut(s)	345, 375, 536, 684, 772, 781
MunI	CAATTG	3 cut(s)	147, 188, 930
Mva1269I	GAATGC	2 cut(s)	142, 823
MvaI	CCWGG	5 cut(s)	345, 375, 536, 684, 781
MwoI	GCNNNNNNNGC	3 cut(s)	289, 485, 1066
NciI	CCSGG	1 cut(s)	772
NdeII	GATC	4 cut(s)	607, 723, 796, 982
NlaIII	CATG	4 cut(s)	551, 856, 902, 964
NlaIV	GGNNCC	8 cut(s)	158, 380, 381, 521, 609, 725, 943, 1105
NmuCI	GTSAC	2 cut(s)	808, 1087
PasI	CCCWGGG	1 cut(s)	374
PctI	GAATGC	2 cut(s)	142, 823
PfeI	GAWTC	2 cut(s)	224, 833
PfoI	TCCNGGA	1 cut(s)	779
PinAI	ACCGGT	1 cut(s)	168
PkrI	GCNGC	6 cut(s)	261, 282, 294, 697, 712, 823
PleI	GAGTC	1 cut(s)	859
PpsI	GAGTC	1 cut(s)	859
PpuMI	RGGWCCY	1 cut(s)	379
Psp5II	RGGWCCY	1 cut(s)	379
Psp6I	CCWGG	5 cut(s)	343, 373, 534, 682, 779
PspFI	CCCAGC	1 cut(s)	515
PspGI	CCWGG	5 cut(s)	343, 373, 534, 682, 779
PspN4I	GGNNCC	8 cut(s)	158, 380, 381, 521, 609, 725, 943, 1105
PspPI	GGNCC	5 cut(s)	341, 371, 379, 892, 942
PspPPI	RGGWCCY	1 cut(s)	379
PstNI	CAGNNNCTG	1 cut(s)	292
PsuI	RGATCY	4 cut(s)	607, 723, 796, 982
PvuII	CAGCTG	2 cut(s)	824, 923
RsaI	GTAC	2 cut(s)	158, 521
RsaNI	GTAC	2 cut(s)	157, 520
RseI	CAYNNNNRTG	1 cut(s)	741
SalI	GTCGAC	1 cut(s)	862
SaqAI	TTAA	3 cut(s)	74, 596, 731
SatI	GCNGC	6 cut(s)	260, 281, 293, 696, 711, 822
Sau3AI	GATC	4 cut(s)	607, 723, 796, 982
Sau96I	GGNCC	5 cut(s)	341, 371, 379, 892, 942
SchI	GAGTC	1 cut(s)	859
ScrFI	CCNGG	6 cut(s)	345, 375, 536, 684, 772, 781
SduI	GDGCHC	2 cut(s)	368, 777
SfaNI	GCATC	1 cut(s)	475
SinI	GGWCC	3 cut(s)	379, 892, 942
SmiMI	CAYNNNNRTG	1 cut(s)	741
Sse9I	AATT	7 cut(s)	147, 188, 551, 663, 930, 996, 1075
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	6 cut(s)	343, 373, 534, 682, 770, 779
StyI	CCWWGG	1 cut(s)	840
TaaI	ACNGT	2 cut(s)	205, 586
TaqI	TCGA	2 cut(s)	836, 863
TasI	AATT	7 cut(s)	147, 188, 551, 663, 930, 996, 1075
TfiI	GAWTC	2 cut(s)	224, 833
Tru1I	TTAA	3 cut(s)	74, 596, 731
Tru9I	TTAA	3 cut(s)	74, 596, 731
TscAI	CASTG	4 cut(s)	208, 373, 618, 697
TseFI	GTSAC	2 cut(s)	808, 1087
TseI	GCWGC	6 cut(s)	259, 280, 292, 695, 710, 821
Tsp45I	GTSAC	2 cut(s)	808, 1087
TspDTI	ATGAA	3 cut(s)	564, 1008, 1098
TspRI	CASTG	4 cut(s)	208, 373, 618, 697
VpaK11BI	GGWCC	3 cut(s)	379, 892, 942
XapI	RAATTY	1 cut(s)	663
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XmiI	GTMKAC	2 cut(s)	849, 863
XspI	CTAG	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.