Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

scaffold_51

Orthogroup ID

OG0002225

Physical Location & Seq

Genomic Coordinates Reverse (-)

5913 .. 7546

Gene Structure 1634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.I005100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAGCCCAAGAACAAAACCCAACGCTTCATCTACACTAGCTGCGCTCTCTTCCACAAACCACCGGCGACGACGACCACTCCTCCTCTCCGGCGACGACGACCACTGCAGTAAGTGTGGGCCTGGAAATGTGTTCTTGGTGGGGATAGGGCTTGGGGACCCTGAGCTCCTGACATTGAAGGCTTATAGAGTTATTCAGAATGCTGATCTATTGTTGTATGATAGGTTGGTGTCCAATGATGTGTTGGAATTGGTTGACTCTGGTGCTAGACTTCTCTATGTGGGCAAGACTGCTGGGTACCATAGCAGAACCCAGAAGGTGATACATGAATTGCTACTGAGTTTTGCTGAAGCTGGAGCTAATGTTGTGAGACTAAAAGGAGGGGATCCACTGGTGTTTGGTAGGGGTGGGGAGGAGATGGATTTTCTGCGACAGCAAGGAATTGAAGTGAATGTTATTCCAGGTACAATGATAGATTTGTCTGGTAAACGCTCTTATTTAGTGGAGACTTTTTATGATAATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

176

Amino Acids

19.13

Weight (kDa)

6.9

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40850 AT5G40850 AT5G40850
fragaria_vesca	FvH4_7g00480 FvH4_7g00480 FvH4_7g00480 FvH4_7g00480 FvH4_7g00480
malus_domestica	MD07G1002800.v1.1
prunus_persica	Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.I005100_v2.0.a1
pyrus_communis	pycom02g26670 pycom07g00280
rosa_chinensis	RchiOBHm_Chr1g0314251 RchiOBHm_Chr4g0408791 RchiOBHm_Chr6g0277781
rosa_laevigata	RLG00000013272 RLG00000030770
rosa_multiflora	Rmu_sc0002211.1_g000012 Rmu_sc0006114.1_g000007 Rmu_sc0008256.1_g000002 Rmu_sc0013258.1_g000003 Rmu_sc0017573.1_g000002 Rmu_sc0038479.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332000 Rroxscaffold_7G00190980
rosa_rugosa	Rorug01G0000600 Rorug06G0110800 Rorug06G0110900
rosa_samantha	Rh1BG002400 Rh1BG268900 Rh1CG009600 Rh1CG009900 Rh4BG149300 Rh6AG221700 Rh6BG225200 Rh6CG227900 Rh6DG218900
rosa_wichuraiana	Rw1G000410 Rw6G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	297
AccB1I	GGYRCC	1 cut(s)	297
AclWI	GGATC	2 cut(s)	380, 393
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	2 cut(s)	299, 466
AgsI	TTSAA	2 cut(s)	178, 446
AjnI	CCWGG	2 cut(s)	121, 460
AluBI	AGCT	4 cut(s)	41, 166, 353, 359
AluI	AGCT	4 cut(s)	41, 166, 353, 359
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	2 cut(s)	364, 500
AlwI	GGATC	2 cut(s)	380, 393
AoxI	GGCC	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	41
Asp718I	GGTACC	1 cut(s)	297
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	2 cut(s)	119, 157
AsuHPI	GGTGA	1 cut(s)	331
AvaII	GGWCC	1 cut(s)	157
BamHI	GGATCC	1 cut(s)	385
BanI	GGYRCC	1 cut(s)	297
BanII	GRGCYC	2 cut(s)	8, 168
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	1 cut(s)	412
BciT130I	CCWGG	2 cut(s)	123, 462
BcoDI	GTCTC	2 cut(s)	364, 500
BfaI	CTAG	2 cut(s)	38, 267
BfmI	CTRYAG	1 cut(s)	106
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	2 cut(s)	123, 462
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	2 cut(s)	119, 157
BmiI	GGNNCC	4 cut(s)	158, 159, 299, 387
BmrFI	CCNGG	2 cut(s)	123, 462
BpmI	CTGGAG	1 cut(s)	375
Bpu10I	CCTNAGC	1 cut(s)	162
BsaXI	ACNNNNNCTCC	6 cut(s)	63, 66, 93, 96, 348, 378
Bse118I	RCCGGY	1 cut(s)	63
Bse1I	ACTGG	1 cut(s)	396
BseBI	CCWGG	2 cut(s)	123, 462
BseMII	CTCAG	2 cut(s)	153, 329
BseNI	ACTGG	1 cut(s)	396
BseRI	GAGGAG	3 cut(s)	71, 74, 428
BseXI	GCAGC	1 cut(s)	28
BseYI	CCCAGC	1 cut(s)	293
BshFI	GGCC	1 cut(s)	121
BshNI	GGYRCC	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	2 cut(s)	64, 90
BslFI	GGGAC	1 cut(s)	170
BsmAI	GTCTC	2 cut(s)	364, 500
BsmFI	GGGAC	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	121
Bsp1286I	GDGCHC	2 cut(s)	8, 168
Bsp143I	GATC	2 cut(s)	205, 385
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	2 cut(s)	154, 330
BspLI	GGNNCC	4 cut(s)	158, 159, 299, 387
BspMAI	CTGCAG	1 cut(s)	110
BspPI	GGATC	2 cut(s)	380, 393
BspT107I	GGYRCC	1 cut(s)	297
BsrFI	RCCGGY	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	396
BssAI	RCCGGY	1 cut(s)	63
BssMI	GATC	2 cut(s)	205, 385
Bst2UI	CCWGG	2 cut(s)	123, 462
Bst6I	CTCTTC	1 cut(s)	55
BstDEI	CTNAG	2 cut(s)	162, 338
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	2 cut(s)	208, 388
BstMAI	GTCTC	2 cut(s)	364, 500
BstMBI	GATC	2 cut(s)	205, 385
BstNI	CCWGG	2 cut(s)	123, 462
BstSCI	CCNGG	2 cut(s)	121, 460
BstSFI	CTRYAG	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	28
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	121
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	2 cut(s)	103, 389
CfoI	GCGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	63
Cfr13I	GGNCC	2 cut(s)	119, 157
Csp6I	GTAC	2 cut(s)	298, 465
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	8 cut(s)	6, 41, 121, 151, 166, 182, 353, 359
CviKI_1	RGCY	8 cut(s)	6, 41, 121, 151, 166, 182, 353, 359
CviQI	GTAC	2 cut(s)	298, 465
DdeI	CTNAG	2 cut(s)	162, 338
DpnI	GATC	2 cut(s)	207, 387
DpnII	GATC	2 cut(s)	205, 385
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
Ecl136II	GAGCTC	1 cut(s)	166
Eco24I	GRGCYC	2 cut(s)	8, 168
Eco47I	GGWCC	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	369
EcoICRI	GAGCTC	1 cut(s)	166
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRII	CCWGG	2 cut(s)	121, 460
EcoT38I	GRGCYC	2 cut(s)	8, 168
FaeI	CATG	1 cut(s)	329
FaiI	YATR	8 cut(s)	186, 219, 279, 303, 327, 516, 524, 526
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	1 cut(s)	325
Fnu4HI	GCNGC	1 cut(s)	42
FriOI	GRGCYC	2 cut(s)	8, 168
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	2 cut(s)	38, 267
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	42
GsaI	CCCAGC	1 cut(s)	297
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	2 cut(s)	64, 90
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	1 cut(s)	329
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	2 cut(s)	64, 90
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	2 cut(s)	256, 488
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	1 cut(s)	169
Hpy8I	GTNNAC	2 cut(s)	256, 488
Hpy99I	CGWCG	4 cut(s)	72, 75, 98, 101
HpyAV	CCTTC	2 cut(s)	172, 310
HpyCH4V	TGCA	1 cut(s)	108
HpyF3I	CTNAG	2 cut(s)	162, 338
Hsp92II	CATG	1 cut(s)	329
HspAI	GCGC	1 cut(s)	44
KflI	GGGWCCC	1 cut(s)	157
KpnI	GGTACC	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	205, 385
LmnI	GCTCC	2 cut(s)	171, 356
Lsp1109I	GCAGC	1 cut(s)	28
MaeI	CTAG	2 cut(s)	38, 267
MalI	GATC	2 cut(s)	207, 387
MboI	GATC	2 cut(s)	205, 385
MboII	GAAGA	1 cut(s)	42
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	2 cut(s)	8, 168
MluCI	AATT	3 cut(s)	248, 329, 441
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	4 cut(s)	92, 95, 374, 406
MspI	CCGG	2 cut(s)	64, 90
MspR9I	CCNGG	2 cut(s)	123, 462
Mva1269I	GAATGC	1 cut(s)	205
MvaI	CCWGG	2 cut(s)	123, 462
NdeII	GATC	2 cut(s)	205, 385
NlaIII	CATG	1 cut(s)	329
NlaIV	GGNNCC	4 cut(s)	158, 159, 299, 387
PctI	GAATGC	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
PpuMI	RGGWCCY	1 cut(s)	157
Psp124BI	GAGCTC	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	157
Psp6I	CCWGG	2 cut(s)	121, 460
PspFI	CCCAGC	1 cut(s)	293
PspGI	CCWGG	2 cut(s)	121, 460
PspN4I	GGNNCC	4 cut(s)	158, 159, 299, 387
PspPI	GGNCC	2 cut(s)	119, 157
PspPPI	RGGWCCY	1 cut(s)	157
PstI	CTGCAG	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	385
RsaI	GTAC	2 cut(s)	299, 466
RsaNI	GTAC	2 cut(s)	298, 465
SacI	GAGCTC	1 cut(s)	168
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	2 cut(s)	205, 385
Sau96I	GGNCC	2 cut(s)	119, 157
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	2 cut(s)	123, 462
SduI	GDGCHC	2 cut(s)	8, 168
SetI	ASST	7 cut(s)	43, 168, 227, 321, 355, 361, 466
SfcI	CTRYAG	1 cut(s)	106
SgrAI	CRCCGGYG	1 cut(s)	63
SinI	GGWCC	1 cut(s)	157
Sse9I	AATT	3 cut(s)	248, 329, 441
SspMI	CTAG	2 cut(s)	38, 267
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	121, 460
TasI	AATT	3 cut(s)	248, 329, 441
TscAI	CASTG	2 cut(s)	110, 396
TseI	GCWGC	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	18, 342
TspRI	CASTG	2 cut(s)	110, 396
VpaK11BI	GGWCC	1 cut(s)	157
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XspI	CTAG	2 cut(s)	38, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.