Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002225

Physical Location & Seq

Genomic Coordinates Reverse (-)

1554127 .. 1555691

Gene Structure 1565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG009900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGGTTTGTCGACTCTCCCTTCTCTTGCTCAAAAGTTGGTCCATCATGGTCTGCCACCAACAACACCAGCTGTTGCAGTTGAGCGAGGGACCACACCTCAACAGCGCATGGTCTTTGCAGAACTGAAGGATCTTGCCAATGAAATTACATTAGCAGAGTTAGTATCACCAACGCTCATCGTCATTGGGAAAGTAGTTGCACTTTCACCATTGTGGCCACATACTTTGAACGAAGTGGCTGCTCTTGTCGGAGCCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

86

Amino Acids

9.05

Weight (kDa)

6.24

Isoelectric Point (pI)

29.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40850 AT5G40850 AT5G40850
fragaria_vesca	FvH4_7g00480 FvH4_7g00480 FvH4_7g00480 FvH4_7g00480 FvH4_7g00480
malus_domestica	MD07G1002800.v1.1
prunus_persica	Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.I005100_v2.0.a1
pyrus_communis	pycom02g26670 pycom07g00280
rosa_chinensis	RchiOBHm_Chr1g0314251 RchiOBHm_Chr4g0408791 RchiOBHm_Chr6g0277781
rosa_laevigata	RLG00000013272 RLG00000030770
rosa_multiflora	Rmu_sc0002211.1_g000012 Rmu_sc0006114.1_g000007 Rmu_sc0008256.1_g000002 Rmu_sc0013258.1_g000003 Rmu_sc0017573.1_g000002 Rmu_sc0038479.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332000 Rroxscaffold_7G00190980
rosa_rugosa	Rorug01G0000600 Rorug06G0110800 Rorug06G0110900
rosa_samantha	Rh1BG002400 Rh1BG268900 Rh1CG009600 Rh1CG009900 Rh4BG149300 Rh6AG221700 Rh6BG225200 Rh6CG227900 Rh6DG218900
rosa_wichuraiana	Rw1G000410 Rw6G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	11
AclWI	GGATC	1 cut(s)	138
AcoI	YGGCCR	1 cut(s)	215
AcuI	CTGAAG	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	229
AleI	CACNNNNGTG	1 cut(s)	211
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
AlwI	GGATC	1 cut(s)	138
AoxI	GGCC	1 cut(s)	215
ApeKI	GCWGC	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	2 cut(s)	40, 90
AsuHPI	GGTGA	2 cut(s)	159, 198
AvaII	GGWCC	2 cut(s)	40, 90
BalI	TGGCCA	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	1 cut(s)	51
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme18I	GGWCC	2 cut(s)	40, 90
BmgT120I	GGNCC	2 cut(s)	40, 90
BmiI	GGNNCC	2 cut(s)	91, 253
BseXI	GCAGC	1 cut(s)	226
BshFI	GGCC	1 cut(s)	217
BslFI	GGGAC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	217
Bsp143I	GATC	1 cut(s)	130
BspANI	GGCC	1 cut(s)	217
BspLI	GGNNCC	2 cut(s)	91, 253
BspPI	GGATC	1 cut(s)	138
BssMI	GATC	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	217
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	2 cut(s)	40, 90
CspCI	CAANNNNNGTGG	2 cut(s)	207, 242
CviAII	CATG	2 cut(s)	47, 109
CviJI	RGCY	4 cut(s)	71, 217, 239, 254
CviKI_1	RGCY	4 cut(s)	71, 217, 239, 254
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	215
Eco47I	GGWCC	2 cut(s)	40, 90
Eco57I	CTGAAG	1 cut(s)	146
FaeI	CATG	2 cut(s)	50, 112
FaiI	YATR	5 cut(s)	48, 110, 222, 257, 259
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	2 cut(s)	46, 108
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	240
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	217
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	50, 112
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	1 cut(s)	13
HphI	GGTGA	2 cut(s)	159, 198
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	251
Hpy8I	GTNNAC	1 cut(s)	12
HpyAV	CCTTC	2 cut(s)	30, 121
HpyCH4V	TGCA	3 cut(s)	77, 119, 200
Hsp92II	CATG	2 cut(s)	50, 112
HspAI	GCGC	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	1 cut(s)	81
Lsp1109I	GCAGC	1 cut(s)	226
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MflI	RGATCY	1 cut(s)	130
MlsI	TGGCCA	1 cut(s)	217
MluCI	AATT	1 cut(s)	144
MluNI	TGGCCA	1 cut(s)	217
MlyI	GAGTC	1 cut(s)	7
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	2 cut(s)	80, 108
Mox20I	TGGCCA	1 cut(s)	217
MscI	TGGCCA	1 cut(s)	217
MslI	CAYNNNNRTG	1 cut(s)	211
Msp20I	TGGCCA	1 cut(s)	217
MspA1I	CMGCKG	1 cut(s)	71
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	50, 112
NlaIV	GGNNCC	2 cut(s)	91, 253
OliI	CACNNNNGTG	1 cut(s)	211
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
PspN4I	GGNNCC	2 cut(s)	91, 253
PspPI	GGNCC	2 cut(s)	40, 90
PsuI	RGATCY	1 cut(s)	130
PvuII	CAGCTG	1 cut(s)	71
RseI	CAYNNNNRTG	1 cut(s)	211
SalI	GTCGAC	1 cut(s)	10
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	2 cut(s)	40, 90
SchI	GAGTC	1 cut(s)	7
SetI	ASST	2 cut(s)	73, 100
SgeI	CNNG	7 cut(s)	38, 59, 80, 98, 121, 146, 257
SinI	GGWCC	2 cut(s)	40, 90
SmiMI	CAYNNNNRTG	1 cut(s)	211
Sse9I	AATT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	11
TasI	AATT	1 cut(s)	144
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	156
VpaK11BI	GGWCC	2 cut(s)	40, 90
XmiI	GTMKAC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.