disease resistance
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g15150 FvH4_6g50311 |
| malus_domestica | MD02G1164500.v1.1 MD02G1165200.v1.1 MD02G1165700.v1.1 MD15G1263200.v1.1 |
| prunus_persica | Prupe.7G139000_v2.0.a1 |
| pyrus_communis | pycom02g13110 pycom02g13130 pycom15g23970 pycom15g24000 |
| rosa_chinensis | RchiOBHm_Chr2g0104271 RchiOBHm_Chr2g0104291 RchiOBHm_Chr2g0104321 RchiOBHm_Chr2g0104341 |
| rosa_laevigata | RLG00000016962 RLG00000017326 |
| rosa_multiflora | Rmu_co8091214.1_g000001 Rmu_co8203698.1_g000001 Rmu_co8297485.1_g000001 Rmu_co8338119.1_g000001 Rmu_sc0000676.1_g000020 Rmu_sc0002316.1_g000098 Rmu_sc0002414.1_g000006 Rmu_sc0005137.1_g000003 |
| rosa_samantha | Rh2BG177400 Rh2BG178100 Rh2DG176700 Rh2DG177000 Rh7AG022500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 776 |
| AciI | CCGC | 2 cut(s) | 66, 98 |
| AclWI | GGATC | 1 cut(s) | 528 |
| AcsI | RAATTY | 4 cut(s) | 89, 178, 216, 324 |
| AcuI | CTGAAG | 4 cut(s) | 215, 486, 574, 630 |
| AfaI | GTAC | 1 cut(s) | 517 |
| AgsI | TTSAA | 7 cut(s) | 29, 115, 170, 256, 358, 565, 796 |
| AluBI | AGCT | 3 cut(s) | 60, 302, 588 |
| AluI | AGCT | 3 cut(s) | 60, 302, 588 |
| Alw21I | GWGCWC | 1 cut(s) | 573 |
| Alw26I | GTCTC | 1 cut(s) | 648 |
| AlwI | GGATC | 1 cut(s) | 528 |
| ApeKI | GCWGC | 1 cut(s) | 667 |
| ApoI | RAATTY | 4 cut(s) | 89, 178, 216, 324 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 480, 512 |
| AspS9I | GGNCC | 1 cut(s) | 778 |
| AsuHPI | GGTGA | 4 cut(s) | 55, 407, 427, 632 |
| AvaII | GGWCC | 1 cut(s) | 778 |
| BanII | GRGCYC | 1 cut(s) | 762 |
| BbsI | GAAGAC | 1 cut(s) | 618 |
| Bbv12I | GWGCWC | 1 cut(s) | 573 |
| BbvI | GCAGC | 1 cut(s) | 654 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 59, 93 |
| BclI | TGATCA | 1 cut(s) | 483 |
| BcoDI | GTCTC | 1 cut(s) | 648 |
| BfaI | CTAG | 3 cut(s) | 50, 209, 800 |
| BisI | GCNGC | 1 cut(s) | 668 |
| BlsI | GCNGC | 1 cut(s) | 669 |
| Bme18I | GGWCC | 1 cut(s) | 778 |
| BmgT120I | GGNCC | 1 cut(s) | 778 |
| BmiI | GGNNCC | 2 cut(s) | 142, 779 |
| BmsI | GCATC | 1 cut(s) | 300 |
| BpiI | GAAGAC | 1 cut(s) | 618 |
| BpuEI | CTTGAG | 1 cut(s) | 520 |
| BseMII | CTCAG | 1 cut(s) | 442 |
| BseXI | GCAGC | 1 cut(s) | 654 |
| BsiHKAI | GWGCWC | 1 cut(s) | 573 |
| BsmAI | GTCTC | 1 cut(s) | 648 |
| Bsp1286I | GDGCHC | 2 cut(s) | 573, 762 |
| Bsp143I | GATC | 6 cut(s) | 397, 406, 483, 520, 642, 694 |
| BspACI | CCGC | 2 cut(s) | 66, 98 |
| BspCNI | CTCAG | 1 cut(s) | 441 |
| BspLI | GGNNCC | 2 cut(s) | 142, 779 |
| BspPI | GGATC | 1 cut(s) | 528 |
| BssMI | GATC | 6 cut(s) | 397, 406, 483, 520, 642, 694 |
| Bst4CI | ACNGT | 2 cut(s) | 252, 443 |
| Bst6I | CTCTTC | 3 cut(s) | 191, 251, 462 |
| BstDEI | CTNAG | 1 cut(s) | 428 |
| BstKTI | GATC | 6 cut(s) | 400, 409, 486, 523, 645, 697 |
| BstMAI | GTCTC | 1 cut(s) | 648 |
| BstMBI | GATC | 6 cut(s) | 397, 406, 483, 520, 642, 694 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 814 |
| BstV1I | GCAGC | 1 cut(s) | 654 |
| BstV2I | GAAGAC | 1 cut(s) | 618 |
| BstX2I | RGATCY | 1 cut(s) | 520 |
| BstYI | RGATCY | 1 cut(s) | 520 |
| BtsI | GCAGTG | 1 cut(s) | 379 |
| BtsIMutI | CAGTG | 2 cut(s) | 379, 402 |
| Cfr13I | GGNCC | 1 cut(s) | 778 |
| Csp6I | GTAC | 1 cut(s) | 516 |
| CviAII | CATG | 3 cut(s) | 137, 238, 283 |
| CviQI | GTAC | 1 cut(s) | 516 |
| DdeI | CTNAG | 1 cut(s) | 428 |
| DpnI | GATC | 6 cut(s) | 399, 408, 485, 522, 644, 696 |
| DpnII | GATC | 6 cut(s) | 397, 406, 483, 520, 642, 694 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 776 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 776 |
| Eam1104I | CTCTTC | 3 cut(s) | 191, 251, 462 |
| EarI | CTCTTC | 3 cut(s) | 191, 251, 462 |
| Eco24I | GRGCYC | 1 cut(s) | 762 |
| Eco32I | GATATC | 1 cut(s) | 273 |
| Eco47I | GGWCC | 1 cut(s) | 778 |
| Eco57I | CTGAAG | 4 cut(s) | 215, 486, 574, 630 |
| EcoO109I | RGGNCCY | 1 cut(s) | 778 |
| EcoRI | GAATTC | 1 cut(s) | 178 |
| EcoRV | GATATC | 1 cut(s) | 273 |
| EcoT22I | ATGCAT | 1 cut(s) | 337 |
| EcoT38I | GRGCYC | 1 cut(s) | 762 |
| FaeI | CATG | 3 cut(s) | 140, 241, 286 |
| FatI | CATG | 3 cut(s) | 136, 237, 282 |
| FauNDI | CATATG | 1 cut(s) | 331 |
| FbaI | TGATCA | 1 cut(s) | 483 |
| Fnu4HI | GCNGC | 1 cut(s) | 668 |
| FriOI | GRGCYC | 1 cut(s) | 762 |
| Fsp4HI | GCNGC | 1 cut(s) | 668 |
| FspBI | CTAG | 3 cut(s) | 50, 209, 800 |
| GluI | GCNGC | 1 cut(s) | 668 |
| Hin1II | CATG | 3 cut(s) | 140, 241, 286 |
| HindIII | AAGCTT | 2 cut(s) | 58, 300 |
| HinfI | GANTC | 4 cut(s) | 25, 201, 241, 259 |
| HphI | GGTGA | 4 cut(s) | 55, 407, 427, 632 |
| Hpy188I | TCNGA | 5 cut(s) | 177, 195, 206, 411, 583 |
| Hpy188III | TCNNGA | 2 cut(s) | 499, 598 |
| Hpy99I | CGWCG | 1 cut(s) | 773 |
| HpyAV | CCTTC | 5 cut(s) | 109, 237, 328, 559, 690 |
| HpyCH4III | ACNGT | 2 cut(s) | 252, 443 |
| HpyCH4IV | ACGT | 1 cut(s) | 771 |
| HpyCH4V | TGCA | 4 cut(s) | 19, 335, 372, 670 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 814 |
| HpyF3I | CTNAG | 1 cut(s) | 428 |
| HpySE526I | ACGT | 1 cut(s) | 771 |
| Hsp92II | CATG | 3 cut(s) | 140, 241, 286 |
| Ksp22I | TGATCA | 1 cut(s) | 483 |
| Kzo9I | GATC | 6 cut(s) | 397, 406, 483, 520, 642, 694 |
| LpnPI | CCDG | 7 cut(s) | 99, 162, 378, 477, 509, 549, 621 |
| Lsp1109I | GCAGC | 1 cut(s) | 654 |
| LweI | GCATC | 1 cut(s) | 300 |
| MaeI | CTAG | 3 cut(s) | 50, 209, 800 |
| MaeII | ACGT | 1 cut(s) | 771 |
| MaeIII | GTNAC | 4 cut(s) | 127, 161, 374, 526 |
| MalI | GATC | 6 cut(s) | 399, 408, 485, 522, 644, 696 |
| MboI | GATC | 6 cut(s) | 397, 406, 483, 520, 642, 694 |
| MboII | GAAGA | 7 cut(s) | 208, 268, 271, 280, 479, 623, 740 |
| MflI | RGATCY | 1 cut(s) | 520 |
| MhlI | GDGCHC | 2 cut(s) | 573, 762 |
| MluCI | AATT | 9 cut(s) | 89, 155, 178, 216, 324, 353, 386, 488, 543 |
| MlyI | GAGTC | 1 cut(s) | 268 |
| MnlI | CCTC | 7 cut(s) | 37, 325, 343, 495, 550, 563, 791 |
| Mph1103I | ATGCAT | 1 cut(s) | 337 |
| MseI | TTAA | 3 cut(s) | 56, 419, 546 |
| MslI | CAYNNNNRTG | 1 cut(s) | 236 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 814 |
| NdeI | CATATG | 1 cut(s) | 331 |
| NdeII | GATC | 6 cut(s) | 397, 406, 483, 520, 642, 694 |
| NlaIII | CATG | 3 cut(s) | 140, 241, 286 |
| NlaIV | GGNNCC | 2 cut(s) | 142, 779 |
| NmuCI | GTSAC | 2 cut(s) | 127, 374 |
| NsiI | ATGCAT | 1 cut(s) | 337 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 768 |
| PfeI | GAWTC | 3 cut(s) | 25, 201, 241 |
| PkrI | GCNGC | 1 cut(s) | 669 |
| PleI | GAGTC | 1 cut(s) | 267 |
| PpsI | GAGTC | 1 cut(s) | 267 |
| PpuMI | RGGWCCY | 1 cut(s) | 778 |
| Psp5II | RGGWCCY | 1 cut(s) | 778 |
| PspN4I | GGNNCC | 2 cut(s) | 142, 779 |
| PspPI | GGNCC | 1 cut(s) | 778 |
| PspPPI | RGGWCCY | 1 cut(s) | 778 |
| PsuI | RGATCY | 1 cut(s) | 520 |
| RsaI | GTAC | 1 cut(s) | 517 |
| RsaNI | GTAC | 1 cut(s) | 516 |
| RseI | CAYNNNNRTG | 1 cut(s) | 236 |
| SaqAI | TTAA | 3 cut(s) | 56, 419, 546 |
| SatI | GCNGC | 1 cut(s) | 668 |
| Sau3AI | GATC | 6 cut(s) | 397, 406, 483, 520, 642, 694 |
| Sau96I | GGNCC | 1 cut(s) | 778 |
| SchI | GAGTC | 1 cut(s) | 268 |
| SduI | GDGCHC | 2 cut(s) | 573, 762 |
| SfaNI | GCATC | 1 cut(s) | 300 |
| SinI | GGWCC | 1 cut(s) | 778 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 236 |
| SmlI | CTYRAG | 1 cut(s) | 499 |
| SmoI | CTYRAG | 1 cut(s) | 499 |
| Sse9I | AATT | 9 cut(s) | 89, 155, 178, 216, 324, 353, 386, 488, 543 |
| SsiI | CCGC | 2 cut(s) | 66, 98 |
| SspMI | CTAG | 3 cut(s) | 50, 209, 800 |
| TaaI | ACNGT | 2 cut(s) | 252, 443 |
| TaiI | ACGT | 1 cut(s) | 774 |
| TaqI | TCGA | 4 cut(s) | 555, 573, 762, 768 |
| TasI | AATT | 9 cut(s) | 89, 155, 178, 216, 324, 353, 386, 488, 543 |
| TfiI | GAWTC | 3 cut(s) | 25, 201, 241 |
| Tru1I | TTAA | 3 cut(s) | 56, 419, 546 |
| Tru9I | TTAA | 3 cut(s) | 56, 419, 546 |
| TscAI | CASTG | 2 cut(s) | 379, 409 |
| TseFI | GTSAC | 2 cut(s) | 127, 374 |
| TseI | GCWGC | 1 cut(s) | 667 |
| Tsp45I | GTSAC | 2 cut(s) | 127, 374 |
| TspDTI | ATGAA | 7 cut(s) | 210, 254, 271, 318, 672, 726, 741 |
| TspGWI | ACGGA | 2 cut(s) | 26, 533 |
| TspRI | CASTG | 2 cut(s) | 379, 409 |
| VpaK11BI | GGWCC | 1 cut(s) | 778 |
| XapI | RAATTY | 4 cut(s) | 89, 178, 216, 324 |
| XspI | CTAG | 3 cut(s) | 50, 209, 800 |
| Zsp2I | ATGCAT | 1 cut(s) | 337 |