Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005167

Physical Location & Seq

Genomic Coordinates Forward (+)

18140030 .. 18140572

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g24000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTGTGATATCGGCCAAGGTTTGGTCCAAATTTTAGATGCACTGCCAAATCTAGTGGAATTGAACATAGATTATTGCCATGATCTGGTGCAACTTCCTGCCAACCTTTGTGACCTTGTTCACCTTAAGAAGCTTAGCATCACCAACTGTCATAAGCTATCTGCCTTGCCTGCAGACATCGGAAAGCTAGTCAATCTAGAAGTGTTGAGGCTTAGGTCTTGTGCAGAATTGTTAGAGTTGCCACGCTCTATTAGGAACCTTATAGTTTTGAAATTTCTTGACATATCTGATTGCTTTAGCGTAGAGGAGTTGCCCGAGGACATTGGTGCAATGTGCAGCATGGAAAAGATCAATGTGAGCCAGTGTTCAAGACTGAAAGAGCTGCCTGCTTCTGTTATGGATATTCAGCAGTTGAATGAAGTGATATGCGACGAGGAGACAAAAACTTTATGGGAACCCTTCTTACCATTTCTCACAAACATACACATAAAGGTGATCAAAGAAGATATCAACCTAAGTTGGCTCAACAAGCTTCCACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

181

Amino Acids

20.34

Weight (kDa)

4.79

Isoelectric Point (pI)

56.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	20 - 97	2.7e-09	Leucine-rich repeat region
LRR_14	PF23598	83 - 148	1.7e-08	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005167)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15150 FvH4_6g50311
malus_domestica	MD02G1164500.v1.1 MD02G1165200.v1.1 MD02G1165700.v1.1 MD15G1263200.v1.1
prunus_persica	Prupe.7G139000_v2.0.a1
pyrus_communis	pycom02g13110 pycom02g13130 pycom15g23970 pycom15g24000
rosa_chinensis	RchiOBHm_Chr2g0104271 RchiOBHm_Chr2g0104291 RchiOBHm_Chr2g0104321 RchiOBHm_Chr2g0104341
rosa_laevigata	RLG00000016962 RLG00000017326
rosa_multiflora	Rmu_co8091214.1_g000001 Rmu_co8203698.1_g000001 Rmu_co8297485.1_g000001 Rmu_co8338119.1_g000001 Rmu_sc0000676.1_g000020 Rmu_sc0002316.1_g000098 Rmu_sc0002414.1_g000006 Rmu_sc0005137.1_g000003
rosa_samantha	Rh2BG177400 Rh2BG178100 Rh2DG176700 Rh2DG177000 Rh7AG022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	22, 85
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	2 cut(s)	30, 272
AfiI	CCNNNNNNNGG	2 cut(s)	22, 85
AflII	CTTAAG	1 cut(s)	125
AgsI	TTSAA	4 cut(s)	64, 271, 369, 415
AluBI	AGCT	5 cut(s)	133, 157, 187, 382, 532
AluI	AGCT	5 cut(s)	133, 157, 187, 382, 532
Alw26I	GTCTC	1 cut(s)	431
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	13
ApeKI	GCWGC	2 cut(s)	336, 382
ApoI	RAATTY	2 cut(s)	30, 272
AspS9I	GGNCC	1 cut(s)	25
AsuHPI	GGTGA	3 cut(s)	113, 133, 505
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	25
BbvI	GCAGC	2 cut(s)	348, 369
BclI	TGATCA	1 cut(s)	495
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	3 cut(s)	53, 188, 197
BfmI	CTRYAG	1 cut(s)	171
BfrI	CTTAAG	1 cut(s)	125
BisI	GCNGC	2 cut(s)	337, 383
BlpI	GCTNAGC	1 cut(s)	134
BlsI	GCNGC	2 cut(s)	338, 384
Bme18I	GGWCC	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	2 cut(s)	257, 456
BmsI	GCATC	2 cut(s)	28, 147
Bpu10I	CCTNAGC	1 cut(s)	212
Bpu1102I	GCTNAGC	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	16, 315
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 85
Bse1I	ACTGG	1 cut(s)	361
Bse3DI	GCAATG	1 cut(s)	336
BseDI	CCNNGG	2 cut(s)	16, 315
BseLI	CCNNNNNNNGG	2 cut(s)	22, 85
BseMI	GCAATG	1 cut(s)	336
BseNI	ACTGG	1 cut(s)	361
BseRI	GAGGAG	2 cut(s)	320, 449
BseXI	GCAGC	2 cut(s)	348, 369
BsgI	GTGCAG	2 cut(s)	243, 355
BshFI	GGCC	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	314
BslI	CCNNNNNNNGG	2 cut(s)	22, 85
BsmAI	GTCTC	1 cut(s)	431
BsnI	GGCC	1 cut(s)	15
BsoBI	CYCGRG	1 cut(s)	314
Bsp143I	GATC	3 cut(s)	82, 348, 495
Bsp1720I	GCTNAGC	1 cut(s)	134
BspANI	GGCC	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	257, 456
BspMAI	CTGCAG	1 cut(s)	175
BspTI	CTTAAG	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	361
BssECI	CCNNGG	2 cut(s)	16, 315
BssMI	GATC	3 cut(s)	82, 348, 495
BssT1I	CCWWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	149
BstAFI	CTTAAG	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	171, 387
BstDEI	CTNAG	3 cut(s)	134, 212, 515
BstKTI	GATC	3 cut(s)	85, 351, 498
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	3 cut(s)	82, 348, 495
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 529
BstSFI	CTRYAG	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	348, 369
BsuRI	GGCC	1 cut(s)	15
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	2 cut(s)	41, 368
Cac8I	GCNNGC	2 cut(s)	171, 387
Cfr13I	GGNCC	1 cut(s)	25
CspCI	CAANNNNNGTGG	2 cut(s)	36, 71
CviAII	CATG	2 cut(s)	80, 340
CviJI	RGCY	9 cut(s)	15, 133, 157, 187, 211, 360, 382, 523, 532
CviKI_1	RGCY	9 cut(s)	15, 133, 157, 187, 211, 360, 382, 523, 532
DdeI	CTNAG	3 cut(s)	134, 212, 515
DpnI	GATC	3 cut(s)	84, 350, 497
DpnII	GATC	3 cut(s)	82, 348, 495
EaeI	YGGCCR	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	16
Eco32I	GATATC	2 cut(s)	10, 508
Eco47I	GGWCC	1 cut(s)	25
Eco88I	CYCGRG	1 cut(s)	314
EcoRV	GATATC	2 cut(s)	10, 508
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	2 cut(s)	83, 343
FatI	CATG	2 cut(s)	79, 339
FbaI	TGATCA	1 cut(s)	495
Fnu4HI	GCNGC	2 cut(s)	337, 383
Fsp4HI	GCNGC	2 cut(s)	337, 383
FspBI	CTAG	3 cut(s)	53, 188, 197
GluI	GCNGC	2 cut(s)	337, 383
HaeIII	GGCC	1 cut(s)	15
Hin1II	CATG	2 cut(s)	83, 343
HindIII	AAGCTT	2 cut(s)	131, 530
HphI	GGTGA	3 cut(s)	113, 133, 505
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	2 cut(s)	182, 289
Hpy188III	TCNNGA	3 cut(s)	197, 278, 369
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	1 cut(s)	434
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4V	TGCA	6 cut(s)	41, 91, 173, 224, 329, 336
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 529
HpyF3I	CTNAG	3 cut(s)	134, 212, 515
Hsp92II	CATG	2 cut(s)	83, 343
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	3 cut(s)	82, 348, 495
LpnPI	CCDG	5 cut(s)	71, 111, 183, 374, 399
Lsp1109I	GCAGC	2 cut(s)	348, 369
LweI	GCATC	2 cut(s)	28, 147
MaeI	CTAG	3 cut(s)	53, 188, 197
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	3 cut(s)	84, 350, 497
MboI	GATC	3 cut(s)	82, 348, 495
MboII	GAAGA	1 cut(s)	515
MluCI	AATT	4 cut(s)	30, 59, 227, 272
MnlI	CCTC	4 cut(s)	201, 298, 310, 427
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	491
MspCI	CTTAAG	1 cut(s)	125
MwoI	GCNNNNNNNGC	2 cut(s)	170, 529
NdeII	GATC	3 cut(s)	82, 348, 495
NlaIII	CATG	2 cut(s)	83, 343
NlaIV	GGNNCC	2 cut(s)	257, 456
NmuCI	GTSAC	1 cut(s)	110
PflMI	CCANNNNNTGG	2 cut(s)	22, 85
PkrI	GCNGC	2 cut(s)	338, 384
PspN4I	GGNNCC	2 cut(s)	257, 456
PspPI	GGNCC	1 cut(s)	25
PsrI	GAACNNNNNNTAC	2 cut(s)	447, 479
PstI	CTGCAG	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	491
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	2 cut(s)	337, 383
Sau3AI	GATC	3 cut(s)	82, 348, 495
Sau96I	GGNCC	1 cut(s)	25
SfaNI	GCATC	2 cut(s)	28, 147
SfcI	CTRYAG	1 cut(s)	171
SinI	GGWCC	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	4 cut(s)	30, 59, 227, 272
SspMI	CTAG	3 cut(s)	53, 188, 197
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	149
TasI	AATT	4 cut(s)	30, 59, 227, 272
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	2 cut(s)	48, 368
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	2 cut(s)	336, 382
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	432
TspRI	CASTG	2 cut(s)	48, 368
Van91I	CCANNNNNTGG	2 cut(s)	22, 85
Vha464I	CTTAAG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	25
XapI	RAATTY	2 cut(s)	30, 272
XbaI	TCTAGA	1 cut(s)	196
XspI	CTAG	3 cut(s)	53, 188, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.