Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005137.1

Orthogroup ID

OG0005167

Physical Location & Seq

Genomic Coordinates Forward (+)

10067 .. 11961

Gene Structure 1895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005137.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atgtcggctgcatttccaaacctagagaaaatggatattcaagagtgcagatttttgggaaacttgttttcagagctttgtgatctgattcagctaaagaaacccggtatcattgaccattctgatgtagaagttttgcctaaagaaattagaaatttggtcaactcagaagtactgaggttaaggtcttgttataaccttttgaagttaccaagctcagttagaaatctcgaaaagttaaaacctcttgacatatttaacggcatcaacttcaaggaattgcctccatcaattggttggattgggttgcagacttggcgtgaaatctctatatgcgatggcttcatgggcggactccgggctcgatttgctgctggattgacgacctttcgggatgggttacctttctacagcggcgtggattgcaggcgttggattggggtgtgtcgtggtgatgctaggtgtggcggcgtggttcagggtgatttgggatgtggtgattggttcgtagcggcgggatcatggcagagcaggcacggcgttgggatctgttcgatggttaggcgtgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

190

Amino Acids

21.21

Weight (kDa)

8.62

Isoelectric Point (pI)

51.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005167)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15150 FvH4_6g50311
malus_domestica	MD02G1164500.v1.1 MD02G1165200.v1.1 MD02G1165700.v1.1 MD15G1263200.v1.1
prunus_persica	Prupe.7G139000_v2.0.a1
pyrus_communis	pycom02g13110 pycom02g13130 pycom15g23970 pycom15g24000
rosa_chinensis	RchiOBHm_Chr2g0104271 RchiOBHm_Chr2g0104291 RchiOBHm_Chr2g0104321 RchiOBHm_Chr2g0104341
rosa_laevigata	RLG00000016962 RLG00000017326
rosa_multiflora	Rmu_co8091214.1_g000001 Rmu_co8203698.1_g000001 Rmu_co8297485.1_g000001 Rmu_co8338119.1_g000001 Rmu_sc0000676.1_g000020 Rmu_sc0002316.1_g000098 Rmu_sc0002414.1_g000006 Rmu_sc0005137.1_g000003
rosa_samantha	Rh2BG177400 Rh2BG178100 Rh2DG176700 Rh2DG177000 Rh7AG022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	195
AccB7I	CCANNNNNTGG	1 cut(s)	293
AciI	CCGC	5 cut(s)	351, 414, 468, 512, 515
AclWI	GGATC	2 cut(s)	526, 554
AcsI	RAATTY	1 cut(s)	154
AfaI	GTAC	1 cut(s)	174
AfiI	CCNNNNNNNGG	1 cut(s)	293
AgsI	TTSAA	3 cut(s)	41, 205, 274
AluBI	AGCT	3 cut(s)	76, 94, 216
AluI	AGCT	3 cut(s)	76, 94, 216
AlwI	GGATC	2 cut(s)	526, 554
ApeKI	GCWGC	2 cut(s)	8, 371
ApoI	RAATTY	1 cut(s)	154
AsuC2I	CCSGG	2 cut(s)	105, 359
AsuHPI	GGTGA	3 cut(s)	464, 494, 509
BanII	GRGCYC	1 cut(s)	364
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	4 cut(s)	295, 332, 389, 550
BceAI	ACGGC	2 cut(s)	277, 553
BcnI	CCSGG	2 cut(s)	105, 359
BfaI	CTAG	2 cut(s)	23, 459
BfmI	CTRYAG	1 cut(s)	409
BisI	GCNGC	5 cut(s)	9, 372, 415, 469, 513
BlsI	GCNGC	5 cut(s)	10, 373, 416, 470, 514
BmcAI	AGTACT	1 cut(s)	174
Bme1390I	CCNGG	2 cut(s)	105, 359
BmrFI	CCNGG	2 cut(s)	105, 359
BmsI	GCATC	2 cut(s)	273, 445
BpuMI	CCSGG	2 cut(s)	105, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
BseGI	GGATG	2 cut(s)	400, 497
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMII	CTCAG	3 cut(s)	167, 180, 231
BseXI	GCAGC	1 cut(s)	358
BsgI	GTGCAG	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	105, 358
BslI	CCNNNNNNNGG	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	3 cut(s)	82, 518, 546
BspACI	CCGC	5 cut(s)	351, 414, 468, 512, 515
BspCNI	CTCAG	3 cut(s)	168, 179, 230
BspPI	GGATC	2 cut(s)	526, 554
BssMI	GATC	3 cut(s)	82, 518, 546
BstC8I	GCNNGC	2 cut(s)	428, 533
BstDEI	CTNAG	3 cut(s)	166, 176, 217
BstEII	GGTNACC	1 cut(s)	399
BstF5I	GGATG	2 cut(s)	400, 497
BstKTI	GATC	3 cut(s)	85, 521, 549
BstMBI	GATC	3 cut(s)	82, 518, 546
BstMWI	GCNNNNNNNGC	6 cut(s)	316, 348, 368, 423, 532, 537
BstPI	GGTNACC	1 cut(s)	399
BstSCI	CCNGG	2 cut(s)	103, 357
BstSFI	CTRYAG	1 cut(s)	409
BstV1I	GCAGC	1 cut(s)	358
BstX2I	RGATCY	1 cut(s)	546
BstYI	RGATCY	1 cut(s)	546
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	400, 497
Cac8I	GCNNGC	2 cut(s)	428, 533
Csp6I	GTAC	1 cut(s)	173
CviAII	CATG	2 cut(s)	346, 522
CviJI	RGCY	6 cut(s)	8, 76, 94, 216, 342, 362
CviKI_1	RGCY	6 cut(s)	8, 76, 94, 216, 342, 362
CviQI	GTAC	1 cut(s)	173
DdeI	CTNAG	3 cut(s)	166, 176, 217
DpnI	GATC	3 cut(s)	84, 520, 548
DpnII	GATC	3 cut(s)	82, 518, 546
EciI	GGCGGA	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	364
Eco91I	GGTNACC	1 cut(s)	399
EcoO65I	GGTNACC	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	364
FaeI	CATG	2 cut(s)	349, 525
FaiI	YATR	6 cut(s)	195, 254, 332, 334, 347, 523
FatI	CATG	2 cut(s)	345, 521
FauI	CCCGC	1 cut(s)	508
Fnu4HI	GCNGC	5 cut(s)	9, 372, 415, 469, 513
FokI	GGATG	2 cut(s)	407, 504
FriOI	GRGCYC	1 cut(s)	364
Fsp4HI	GCNGC	5 cut(s)	9, 372, 415, 469, 513
FspBI	CTAG	2 cut(s)	23, 459
GluI	GCNGC	5 cut(s)	9, 372, 415, 469, 513
HapII	CCGG	2 cut(s)	105, 358
Hin1II	CATG	2 cut(s)	349, 525
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	2 cut(s)	88, 354
HpaII	CCGG	2 cut(s)	105, 358
HphI	GGTGA	3 cut(s)	464, 494, 509
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	4 cut(s)	73, 87, 124, 169
Hpy188III	TCNNGA	4 cut(s)	41, 230, 248, 392
Hpy8I	GTNNAC	1 cut(s)	163
HpyCH4V	TGCA	4 cut(s)	11, 48, 310, 426
HpyF10VI	GCNNNNNNNGC	6 cut(s)	316, 348, 368, 423, 532, 537
HpyF3I	CTNAG	3 cut(s)	166, 176, 217
Hsp92II	CATG	2 cut(s)	349, 525
Kzo9I	GATC	3 cut(s)	82, 518, 546
LpnPI	CCDG	6 cut(s)	118, 360, 371, 412, 464, 517
Lsp1109I	GCAGC	1 cut(s)	358
LweI	GCATC	2 cut(s)	273, 445
MaeI	CTAG	2 cut(s)	23, 459
MaeIII	GTNAC	2 cut(s)	207, 399
MalI	GATC	3 cut(s)	84, 520, 548
MboI	GATC	3 cut(s)	82, 518, 546
MfeI	CAATTG	1 cut(s)	291
MflI	RGATCY	1 cut(s)	546
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	4 cut(s)	147, 154, 278, 291
MlyI	GAGTC	1 cut(s)	348
MmeI	TCCRAC	2 cut(s)	278, 413
MnlI	CCTC	3 cut(s)	171, 255, 294
MseI	TTAA	3 cut(s)	182, 239, 258
MslI	CAYNNNNRTG	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	414
MspI	CCGG	2 cut(s)	105, 358
MspR9I	CCNGG	2 cut(s)	105, 359
MunI	CAATTG	1 cut(s)	291
MwoI	GCNNNNNNNGC	6 cut(s)	316, 348, 368, 423, 532, 537
NciI	CCSGG	2 cut(s)	105, 359
NdeII	GATC	3 cut(s)	82, 518, 546
NlaIII	CATG	2 cut(s)	349, 525
PfeI	GAWTC	1 cut(s)	88
PflMI	CCANNNNNTGG	1 cut(s)	293
PkrI	GCNGC	5 cut(s)	10, 373, 416, 470, 514
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
PsiI	TTATAA	1 cut(s)	195
PspEI	GGTNACC	1 cut(s)	399
PsuI	RGATCY	1 cut(s)	546
RsaI	GTAC	1 cut(s)	174
RsaNI	GTAC	1 cut(s)	173
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	3 cut(s)	182, 239, 258
SatI	GCNGC	5 cut(s)	9, 372, 415, 469, 513
Sau3AI	GATC	3 cut(s)	82, 518, 546
ScaI	AGTACT	1 cut(s)	174
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	2 cut(s)	105, 359
SduI	GDGCHC	1 cut(s)	364
SfaNI	GCATC	2 cut(s)	273, 445
SfcI	CTRYAG	1 cut(s)	409
SmiMI	CAYNNNNRTG	1 cut(s)	123
Sse9I	AATT	4 cut(s)	147, 154, 278, 291
SsiI	CCGC	5 cut(s)	351, 414, 468, 512, 515
SspMI	CTAG	2 cut(s)	23, 459
StyD4I	CCNGG	2 cut(s)	103, 357
TaqI	TCGA	3 cut(s)	231, 364, 554
TasI	AATT	4 cut(s)	147, 154, 278, 291
TatI	WGTACW	1 cut(s)	172
TauI	GCSGC	3 cut(s)	417, 471, 515
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	3 cut(s)	182, 239, 258
Tru9I	TTAA	3 cut(s)	182, 239, 258
TseI	GCWGC	2 cut(s)	8, 371
TspDTI	ATGAA	1 cut(s)	334
Van91I	CCANNNNNTGG	1 cut(s)	293
XapI	RAATTY	1 cut(s)	154
XcmI	CCANNNNNNNNNTGG	1 cut(s)	294
XspI	CTAG	2 cut(s)	23, 459
ZrmI	AGTACT	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.