Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000676.1

Orthogroup ID

OG0005167

Physical Location & Seq

Genomic Coordinates Reverse (-)

60706 .. 61440

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000676.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atggttaatctgaaggttctaatagtcacaaatcatggtttcatacctgctgaattgagtaattttcacctactggactctttaccaaatctgaagagaatcagactagagcgtgtttcaattccttctataaccaagcatcccatacagttgaagagtttaaagaagatctctttattcatgtgcagtattggtgaagctttcagcaattgctccttccaaatttcacatgcattgccaaatttagaggaactgaatattgactattgcaatgatttggtgaaattgcctgatgagctctgcaatctggttcgcctaaagaagctgagtatcaccaactgtcataagctatctgccttgcctcaagatattgggaaactggtgaaggtagaagttttgcggctaaggtcttgtacagacttggtgaaactcccatgctcagttaaagaccttaagacgttagattttcttgacatatctgattgcttcagcattgtggagttgcctgaagacattggtgagctgagcagtttaagaaagatcaacatgagacagtgctctaggttgcaagagctccccttatcaattatggatcttcagaaactagaggaagtgatatgcgatgaagagacagcacggctgtgggaacccttctcatccggactttgcaacggagtagtaaaggaagtcaaagaagaattcagcctagattggctccaaaagtttcaatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

244

Amino Acids

27.87

Weight (kDa)

6.0

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005167)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15150 FvH4_6g50311
malus_domestica	MD02G1164500.v1.1 MD02G1165200.v1.1 MD02G1165700.v1.1 MD15G1263200.v1.1
prunus_persica	Prupe.7G139000_v2.0.a1
pyrus_communis	pycom02g13110 pycom02g13130 pycom15g23970 pycom15g24000
rosa_chinensis	RchiOBHm_Chr2g0104271 RchiOBHm_Chr2g0104291 RchiOBHm_Chr2g0104321 RchiOBHm_Chr2g0104341
rosa_laevigata	RLG00000016962 RLG00000017326
rosa_multiflora	Rmu_co8091214.1_g000001 Rmu_co8203698.1_g000001 Rmu_co8297485.1_g000001 Rmu_co8338119.1_g000001 Rmu_sc0000676.1_g000020 Rmu_sc0002316.1_g000098 Rmu_sc0002414.1_g000006 Rmu_sc0005137.1_g000003
rosa_samantha	Rh2BG177400 Rh2BG178100 Rh2DG176700 Rh2DG177000 Rh7AG022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	55
AccIII	TCCGGA	1 cut(s)	659
AciI	CCGC	1 cut(s)	400
AclWI	GGATC	1 cut(s)	600
AcsI	RAATTY	3 cut(s)	222, 241, 698
AcuI	CTGAAG	5 cut(s)	32, 113, 472, 528, 581
AfaI	GTAC	1 cut(s)	415
AflII	CTTAAG	1 cut(s)	452
AgsI	TTSAA	3 cut(s)	120, 154, 728
AleI	CACNNNNGTG	1 cut(s)	640
AluBI	AGCT	6 cut(s)	200, 298, 325, 349, 523, 574
AluI	AGCT	6 cut(s)	200, 298, 325, 349, 523, 574
Alw21I	GWGCWC	3 cut(s)	300, 560, 576
Alw26I	GTCTC	2 cut(s)	544, 623
AlwI	GGATC	1 cut(s)	600
Aor13HI	TCCGGA	1 cut(s)	659
ApoI	RAATTY	3 cut(s)	222, 241, 698
AsuHPI	GGTGA	7 cut(s)	59, 206, 292, 325, 394, 436, 530
BanII	GRGCYC	2 cut(s)	300, 576
BbsI	GAAGAC	1 cut(s)	516
Bbv12I	GWGCWC	3 cut(s)	300, 560, 576
BceAI	ACGGC	1 cut(s)	653
BcoDI	GTCTC	2 cut(s)	544, 623
BfaI	CTAG	4 cut(s)	107, 561, 605, 707
BfrI	CTTAAG	1 cut(s)	452
BfuAI	ACCTGC	1 cut(s)	55
BglII	AGATCT	1 cut(s)	168
BisI	GCNGC	1 cut(s)	401
BlpI	GCTNAGC	1 cut(s)	524
BlsI	GCNGC	1 cut(s)	402
BmiI	GGNNCC	2 cut(s)	648, 716
BmsI	GCATC	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	404
Bpu1102I	GCTNAGC	1 cut(s)	524
BpuEI	CTTGAG	1 cut(s)	348
BsaWI	WCCGGW	1 cut(s)	659
Bse1I	ACTGG	2 cut(s)	78, 384
Bse3DI	GCAATG	2 cut(s)	233, 277
BseAI	TCCGGA	1 cut(s)	659
BseGI	GGATG	2 cut(s)	139, 656
BseMI	GCAATG	2 cut(s)	233, 277
BseMII	CTCAG	3 cut(s)	317, 453, 515
BseNI	ACTGG	2 cut(s)	78, 384
BsgI	GTGCAG	1 cut(s)	205
BsiHKAI	GWGCWC	3 cut(s)	300, 560, 576
BsiSI	CCGG	1 cut(s)	660
BsmAI	GTCTC	2 cut(s)	544, 623
Bsp1286I	GDGCHC	3 cut(s)	300, 560, 576
Bsp13I	TCCGGA	1 cut(s)	659
Bsp1407I	TGTACA	1 cut(s)	413
Bsp143I	GATC	3 cut(s)	168, 540, 592
Bsp1720I	GCTNAGC	1 cut(s)	524
BspACI	CCGC	1 cut(s)	400
BspCNI	CTCAG	3 cut(s)	318, 452, 516
BspEI	TCCGGA	1 cut(s)	659
BspLI	GGNNCC	2 cut(s)	648, 716
BspMI	ACCTGC	1 cut(s)	55
BspPI	GGATC	1 cut(s)	600
BspTI	CTTAAG	1 cut(s)	452
BsrDI	GCAATG	2 cut(s)	233, 277
BsrGI	TGTACA	1 cut(s)	413
BsrI	ACTGG	2 cut(s)	78, 384
BssMI	GATC	3 cut(s)	168, 540, 592
Bst4CI	ACNGT	3 cut(s)	150, 341, 555
Bst6I	CTCTTC	3 cut(s)	89, 149, 621
BstAFI	CTTAAG	1 cut(s)	452
BstAUI	TGTACA	1 cut(s)	413
BstDEI	CTNAG	4 cut(s)	326, 404, 439, 524
BstF5I	GGATG	2 cut(s)	139, 656
BstKTI	GATC	3 cut(s)	171, 543, 595
BstMAI	GTCTC	2 cut(s)	544, 623
BstMBI	GATC	3 cut(s)	168, 540, 592
BstMWI	GCNNNNNNNGC	1 cut(s)	295
BstNSI	RCATGY	1 cut(s)	233
BstV2I	GAAGAC	1 cut(s)	516
BstX2I	RGATCY	2 cut(s)	168, 592
BstYI	RGATCY	2 cut(s)	168, 592
BtgZI	GCGATG	1 cut(s)	636
BtsCI	GGATG	2 cut(s)	139, 656
BtsIMutI	CAGTG	1 cut(s)	560
BveI	ACCTGC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	5 cut(s)	35, 181, 230, 435, 547
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	4 cut(s)	326, 404, 439, 524
DpnI	GATC	3 cut(s)	170, 542, 594
DpnII	GATC	3 cut(s)	168, 540, 592
DraI	TTTAAA	1 cut(s)	162
Eam1104I	CTCTTC	3 cut(s)	89, 149, 621
EarI	CTCTTC	3 cut(s)	89, 149, 621
Ecl136II	GAGCTC	2 cut(s)	298, 574
Eco24I	GRGCYC	2 cut(s)	300, 576
Eco53kI	GAGCTC	2 cut(s)	298, 574
Eco57I	CTGAAG	5 cut(s)	32, 113, 472, 528, 581
EcoICRI	GAGCTC	2 cut(s)	298, 574
EcoRI	GAATTC	1 cut(s)	698
EcoT22I	ATGCAT	1 cut(s)	235
EcoT38I	GRGCYC	2 cut(s)	300, 576
FaeI	CATG	5 cut(s)	38, 184, 233, 438, 550
FatI	CATG	5 cut(s)	34, 180, 229, 434, 546
Fnu4HI	GCNGC	1 cut(s)	401
FokI	GGATG	2 cut(s)	126, 643
FriOI	GRGCYC	2 cut(s)	300, 576
Fsp4HI	GCNGC	1 cut(s)	401
FspBI	CTAG	4 cut(s)	107, 561, 605, 707
GluI	GCNGC	1 cut(s)	401
HapII	CCGG	1 cut(s)	660
Hin1II	CATG	5 cut(s)	38, 184, 233, 438, 550
HindIII	AAGCTT	1 cut(s)	198
HinfI	GANTC	2 cut(s)	77, 99
HpaII	CCGG	1 cut(s)	660
HphI	GGTGA	7 cut(s)	59, 206, 292, 325, 394, 436, 530
Hpy188I	TCNGA	5 cut(s)	12, 93, 104, 481, 600
Hpy188III	TCNNGA	3 cut(s)	365, 470, 660
HpyAV	CCTTC	5 cut(s)	7, 135, 226, 379, 661
HpyCH4III	ACNGT	3 cut(s)	150, 341, 555
HpyCH4IV	ACGT	1 cut(s)	458
HpyCH4V	TGCA	6 cut(s)	186, 233, 270, 303, 568, 669
HpyF10VI	GCNNNNNNNGC	1 cut(s)	295
HpyF3I	CTNAG	4 cut(s)	326, 404, 439, 524
HpySE526I	ACGT	1 cut(s)	458
Hsp92II	CATG	5 cut(s)	38, 184, 233, 438, 550
Kpn2I	TCCGGA	1 cut(s)	659
Kzo9I	GATC	3 cut(s)	168, 540, 592
LmnI	GCTCC	3 cut(s)	218, 579, 720
LpnPI	CCDG	7 cut(s)	59, 60, 293, 303, 365, 519, 673
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	4 cut(s)	107, 561, 605, 707
MaeII	ACGT	1 cut(s)	458
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	3 cut(s)	170, 542, 594
MboI	GATC	3 cut(s)	168, 540, 592
MboII	GAAGA	7 cut(s)	106, 166, 178, 521, 587, 638, 707
MfeI	CAATTG	1 cut(s)	208
MflI	RGATCY	2 cut(s)	168, 592
MhlI	GDGCHC	3 cut(s)	300, 560, 576
MluCI	AATT	9 cut(s)	53, 61, 120, 208, 222, 241, 284, 585, 698
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	3 cut(s)	241, 372, 601
Mph1103I	ATGCAT	1 cut(s)	235
MroI	TCCGGA	1 cut(s)	659
MseI	TTAA	5 cut(s)	6, 161, 444, 453, 533
MslI	CAYNNNNRTG	1 cut(s)	640
MspCI	CTTAAG	1 cut(s)	452
MspI	CCGG	1 cut(s)	660
MunI	CAATTG	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	295
NdeII	GATC	3 cut(s)	168, 540, 592
NlaIII	CATG	5 cut(s)	38, 184, 233, 438, 550
NlaIV	GGNNCC	2 cut(s)	648, 716
NmuCI	GTSAC	1 cut(s)	25
NsiI	ATGCAT	1 cut(s)	235
NspI	RCATGY	1 cut(s)	233
OliI	CACNNNNGTG	1 cut(s)	640
PfeI	GAWTC	1 cut(s)	99
PkrI	GCNGC	1 cut(s)	402
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
Psp124BI	GAGCTC	2 cut(s)	300, 576
PspN4I	GGNNCC	2 cut(s)	648, 716
PsuI	RGATCY	2 cut(s)	168, 592
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
RseI	CAYNNNNRTG	1 cut(s)	640
SacI	GAGCTC	2 cut(s)	300, 576
SaqAI	TTAA	5 cut(s)	6, 161, 444, 453, 533
SatI	GCNGC	1 cut(s)	401
Sau3AI	GATC	3 cut(s)	168, 540, 592
SchI	GAGTC	1 cut(s)	71
SduI	GDGCHC	3 cut(s)	300, 560, 576
SfaNI	GCATC	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	640
SmlI	CTYRAG	2 cut(s)	363, 452
SmoI	CTYRAG	2 cut(s)	363, 452
Sse9I	AATT	9 cut(s)	53, 61, 120, 208, 222, 241, 284, 585, 698
SsiI	CCGC	1 cut(s)	400
SspI	AATATT	2 cut(s)	259, 731
SspMI	CTAG	4 cut(s)	107, 561, 605, 707
SstI	GAGCTC	2 cut(s)	300, 576
TaaI	ACNGT	3 cut(s)	150, 341, 555
TaiI	ACGT	1 cut(s)	461
TasI	AATT	9 cut(s)	53, 61, 120, 208, 222, 241, 284, 585, 698
TatI	WGTACW	1 cut(s)	413
TauI	GCSGC	1 cut(s)	403
TfiI	GAWTC	1 cut(s)	99
Tru1I	TTAA	5 cut(s)	6, 161, 444, 453, 533
Tru9I	TTAA	5 cut(s)	6, 161, 444, 453, 533
TscAI	CASTG	1 cut(s)	560
TseFI	GTSAC	1 cut(s)	25
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	3 cut(s)	31, 169, 639
TspGWI	ACGGA	1 cut(s)	687
TspRI	CASTG	1 cut(s)	560
Vha464I	CTTAAG	1 cut(s)	452
XapI	RAATTY	3 cut(s)	222, 241, 698
XceI	RCATGY	1 cut(s)	233
XspI	CTAG	4 cut(s)	107, 561, 605, 707
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.