Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005167

Physical Location & Seq

Genomic Coordinates Forward (+)

15859505 .. 15860227

Gene Structure 723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG178100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAATAAACTGAAGACTCTAGTACTCACAAGTTCAGGTATCGGTCCTGCTGAGTTGAATAACTTTCAACTAGTTGATTCGAAACCAAATCTAAAGAGAATCAGACTAGAACGAATTTCATTTCCTTCAATAAGCAGGTATCCTATACAGTTGAAAAGTTTGAAAAAGATTTCTCTATTCATGTGTAGCGTTGGCCAAGGTTTTGGTAACGGTTCCATACATATATCAGAGGCGTTTCCAAATCTTGTTGAAATGAATATTGATTACTGCAATGATTTGGTGGAGTTGCCTGCCGATCTCTGTGACCTTATTCAACTGAAGAAGCTCAGTGTCACCAATTCTCATAAGCTCTCTGTCTTACCTGAAGACATTGGAAATCTAGTAAATTTAGAGCTGCTGAGGCTTAGGTGTTGTACAGACTTGTCAGAGTTACCCAGCTCGATTAGGAACCTCAAGAACTTAAACTTGCTTGACATATCGAATTGCTTTAGCCTTAAGGAATTGCCTGAAGACATTGGAGAAATGTGCAGTTTAGAGAAGCTCAACATGAGACAGTGCTCGAGATTGAATGAGTTGCCTTCATCAGTTGTGGATCTTGAAAAGTTAATGGAAGTGACATGTGATGAAGAGACAGAAATCTTATGGGAGCCTTTCTTGCCGTATCTCAGTAACATACACATAAAGGTTTTGAAAGAAGATATCAACCTGAATTGGCTCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

240

Amino Acids

27.25

Weight (kDa)

5.23

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	79 - 162	3e-10	Leucine-rich repeat region
LRR_14	PF23598	164 - 212	4.8e-08	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005167)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15150 FvH4_6g50311
malus_domestica	MD02G1164500.v1.1 MD02G1165200.v1.1 MD02G1165700.v1.1 MD15G1263200.v1.1
prunus_persica	Prupe.7G139000_v2.0.a1
pyrus_communis	pycom02g13110 pycom02g13130 pycom15g23970 pycom15g24000
rosa_chinensis	RchiOBHm_Chr2g0104271 RchiOBHm_Chr2g0104291 RchiOBHm_Chr2g0104321 RchiOBHm_Chr2g0104341
rosa_laevigata	RLG00000016962 RLG00000017326
rosa_multiflora	Rmu_co8091214.1_g000001 Rmu_co8203698.1_g000001 Rmu_co8297485.1_g000001 Rmu_co8338119.1_g000001 Rmu_sc0000676.1_g000020 Rmu_sc0002316.1_g000098 Rmu_sc0002414.1_g000006 Rmu_sc0005137.1_g000003
rosa_samantha	Rh2BG177400 Rh2BG178100 Rh2DG176700 Rh2DG177000 Rh7AG022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	126
AclWI	GGATC	1 cut(s)	600
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	2 cut(s)	114, 385
AcuI	CTGAAG	4 cut(s)	32, 338, 384, 528
AfaI	GTAC	2 cut(s)	24, 415
AflII	CTTAAG	1 cut(s)	494
AflIII	ACRYGT	1 cut(s)	617
AhlI	ACTAGT	1 cut(s)	70
AluBI	AGCT	5 cut(s)	325, 349, 394, 438, 541
AluI	AGCT	5 cut(s)	325, 349, 394, 438, 541
Alw21I	GWGCWC	1 cut(s)	560
Alw26I	GTCTC	2 cut(s)	544, 623
AlwI	GGATC	1 cut(s)	600
Ama87I	CYCGRG	1 cut(s)	559
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	394
ApoI	RAATTY	2 cut(s)	114, 385
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	325
AsuII	TTCGAA	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	559
AvaII	GGWCC	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	195
BbsI	GAAGAC	3 cut(s)	20, 372, 516
Bbv12I	GWGCWC	1 cut(s)	560
BbvCI	CCTCAGC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	381
BceAI	ACGGC	1 cut(s)	643
BciVI	GTATCC	1 cut(s)	150
BcoDI	GTCTC	2 cut(s)	544, 623
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	5 cut(s)	20, 71, 107, 380, 721
BfrI	CTTAAG	1 cut(s)	494
BfuAI	ACCTGC	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	150
BisI	GCNGC	1 cut(s)	395
BlsI	GCNGC	1 cut(s)	396
BmcAI	AGTACT	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	44
BmeT110I	CYCGRG	1 cut(s)	559
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	4 cut(s)	214, 449, 648, 716
BpiI	GAAGAC	3 cut(s)	20, 372, 516
Bpu10I	CCTNAGC	2 cut(s)	398, 404
Bpu14I	TTCGAA	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	196
Bse3DI	GCAATG	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	196
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	4 cut(s)	42, 340, 389, 679
BseXI	GCAGC	1 cut(s)	381
BseYI	CCCAGC	1 cut(s)	434
BsgI	GTGCAG	1 cut(s)	547
BshFI	GGCC	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	560
BsiHKCI	CYCGRG	1 cut(s)	559
BsmAI	GTCTC	2 cut(s)	544, 623
BsnI	GGCC	1 cut(s)	195
BsoBI	CYCGRG	1 cut(s)	559
Bsp119I	TTCGAA	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp1407I	TGTACA	1 cut(s)	413
Bsp143I	GATC	2 cut(s)	295, 592
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	4 cut(s)	43, 339, 390, 678
BspLI	GGNNCC	4 cut(s)	214, 449, 648, 716
BspMI	ACCTGC	1 cut(s)	126
BspPI	GGATC	1 cut(s)	600
BspT104I	TTCGAA	1 cut(s)	80
BspTI	CTTAAG	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	277
BsrGI	TGTACA	1 cut(s)	413
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	2 cut(s)	295, 592
BssT1I	CCWWGG	1 cut(s)	196
Bst4CI	ACNGT	3 cut(s)	150, 212, 555
Bst6I	CTCTTC	1 cut(s)	621
BstAFI	CTTAAG	1 cut(s)	494
BstAUI	TGTACA	1 cut(s)	413
BstBI	TTCGAA	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	5 cut(s)	51, 326, 398, 404, 665
BstKTI	GATC	2 cut(s)	298, 595
BstMAI	GTCTC	2 cut(s)	544, 623
BstMBI	GATC	2 cut(s)	295, 592
BstMWI	GCNNNNNNNGC	2 cut(s)	400, 655
BstNSI	RCATGY	1 cut(s)	621
BstV1I	GCAGC	1 cut(s)	381
BstV2I	GAAGAC	3 cut(s)	20, 372, 516
BstX2I	RGATCY	1 cut(s)	592
BstXI	CCANNNNNNTGG	1 cut(s)	203
BstYI	RGATCY	1 cut(s)	592
BsuI	GTATCC	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	195
BtsIMutI	CAGTG	2 cut(s)	334, 560
BveI	ACCTGC	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	23, 414
CviAII	CATG	3 cut(s)	181, 547, 618
CviQI	GTAC	2 cut(s)	23, 414
DdeI	CTNAG	5 cut(s)	51, 326, 398, 404, 665
DpnI	GATC	2 cut(s)	297, 594
DpnII	GATC	2 cut(s)	295, 592
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
Eco130I	CCWWGG	1 cut(s)	196
Eco32I	GATATC	1 cut(s)	700
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	4 cut(s)	32, 338, 384, 528
Eco88I	CYCGRG	1 cut(s)	559
EcoRV	GATATC	1 cut(s)	700
EcoT14I	CCWWGG	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	196
FaeI	CATG	3 cut(s)	184, 550, 621
FatI	CATG	3 cut(s)	180, 546, 617
Fnu4HI	GCNGC	1 cut(s)	395
Fsp4HI	GCNGC	1 cut(s)	395
FspBI	CTAG	5 cut(s)	20, 71, 107, 380, 721
GluI	GCNGC	1 cut(s)	395
GsaI	CCCAGC	1 cut(s)	438
HaeIII	GGCC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	184, 550, 621
HinfI	GANTC	3 cut(s)	16, 77, 99
HphI	GGTGA	1 cut(s)	325
Hpy188I	TCNGA	3 cut(s)	104, 229, 427
Hpy188III	TCNNGA	3 cut(s)	454, 561, 596
HpyAV	CCTTC	2 cut(s)	135, 588
HpyCH4III	ACNGT	3 cut(s)	150, 212, 555
HpyCH4V	TGCA	2 cut(s)	270, 528
HpyF10VI	GCNNNNNNNGC	2 cut(s)	400, 655
HpyF3I	CTNAG	5 cut(s)	51, 326, 398, 404, 665
Hsp92II	CATG	3 cut(s)	184, 550, 621
Kzo9I	GATC	2 cut(s)	295, 592
LmnI	GCTCC	2 cut(s)	646, 720
LpnPI	CCDG	8 cut(s)	21, 60, 121, 303, 375, 448, 519, 719
Lsp1109I	GCAGC	1 cut(s)	381
MaeI	CTAG	5 cut(s)	20, 71, 107, 380, 721
MaeIII	GTNAC	6 cut(s)	206, 302, 331, 429, 613, 668
MalI	GATC	2 cut(s)	297, 594
MboI	GATC	2 cut(s)	295, 592
MboII	GAAGA	6 cut(s)	25, 331, 377, 521, 638, 707
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	1 cut(s)	560
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	6 cut(s)	114, 337, 385, 481, 500, 709
MluNI	TGGCCA	1 cut(s)	195
MlyI	GAGTC	1 cut(s)	10
MnlI	CCTC	3 cut(s)	223, 393, 461
Mox20I	TGGCCA	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	3 cut(s)	461, 495, 605
Msp20I	TGGCCA	1 cut(s)	195
MspCI	CTTAAG	1 cut(s)	494
MwoI	GCNNNNNNNGC	2 cut(s)	400, 655
NdeII	GATC	2 cut(s)	295, 592
NlaIII	CATG	3 cut(s)	184, 550, 621
NlaIV	GGNNCC	4 cut(s)	214, 449, 648, 716
NmuCI	GTSAC	3 cut(s)	302, 331, 613
NspI	RCATGY	1 cut(s)	621
NspV	TTCGAA	1 cut(s)	80
PaeR7I	CTCGAG	1 cut(s)	559
PciI	ACATGT	1 cut(s)	617
PfeI	GAWTC	2 cut(s)	77, 99
PkrI	GCNGC	1 cut(s)	396
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
PscI	ACATGT	1 cut(s)	617
PspFI	CCCAGC	1 cut(s)	434
PspN4I	GGNNCC	4 cut(s)	214, 449, 648, 716
PspPI	GGNCC	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	592
RsaI	GTAC	2 cut(s)	24, 415
RsaNI	GTAC	2 cut(s)	23, 414
SaqAI	TTAA	3 cut(s)	461, 495, 605
SatI	GCNGC	1 cut(s)	395
Sau3AI	GATC	2 cut(s)	295, 592
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	1 cut(s)	24
SchI	GAGTC	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	560
Sfr274I	CTCGAG	1 cut(s)	559
SfuI	TTCGAA	1 cut(s)	80
SinI	GGWCC	1 cut(s)	44
SlaI	CTCGAG	1 cut(s)	559
SmlI	CTYRAG	3 cut(s)	452, 494, 559
SmoI	CTYRAG	3 cut(s)	452, 494, 559
SpeI	ACTAGT	1 cut(s)	70
Sse9I	AATT	6 cut(s)	114, 337, 385, 481, 500, 709
SspI	AATATT	1 cut(s)	259
SspMI	CTAG	5 cut(s)	20, 71, 107, 380, 721
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	3 cut(s)	150, 212, 555
TaqI	TCGA	4 cut(s)	80, 440, 479, 560
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	6 cut(s)	114, 337, 385, 481, 500, 709
TatI	WGTACW	2 cut(s)	22, 413
TfiI	GAWTC	2 cut(s)	77, 99
Tru1I	TTAA	3 cut(s)	461, 495, 605
Tru9I	TTAA	3 cut(s)	461, 495, 605
TscAI	CASTG	2 cut(s)	334, 560
TseFI	GTSAC	3 cut(s)	302, 331, 613
TseI	GCWGC	1 cut(s)	394
Tsp45I	GTSAC	3 cut(s)	302, 331, 613
TspDTI	ATGAA	6 cut(s)	17, 108, 169, 269, 570, 639
TspRI	CASTG	2 cut(s)	334, 560
Vha464I	CTTAAG	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	2 cut(s)	114, 385
XceI	RCATGY	1 cut(s)	621
XhoI	CTCGAG	1 cut(s)	559
XspI	CTAG	5 cut(s)	20, 71, 107, 380, 721
ZrmI	AGTACT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.