Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005167

Physical Location & Seq

Genomic Coordinates Forward (+)

15544780 .. 15552775

Gene Structure 7996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG176700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAAGTTTCTAAATGATGATCAAGTGTCAATGCTTGTGCTCACTGCTCCTGGAGGATGCAGGAAAACCACTTTGGCACAGATGTTCTGTCCAGATGAGGAAGTCAAAGAACTGTATCAGAGCACCGGATCCCAAGTACCTGCGTTCCAGAATGAAGCAAATGCACTCTGTTGGCTGCAAAATTTTTTGACAAAAACAGGACAAAATCCTCTACTTTTGGTCTTGGATGATGTTTGGGATGGCTCTTCAGAATCCCTGCTACTTGATAAGTGTCATGAATTCAAAAATCTAAATTACAAGATTTTGGTAACATCAAGATTTCATTTTCCAAGATTTCGTTCTTCATATGAATTGAGTCCACTAAATGATGAAGATGCAATGTCCCTTTTTCTTGATGCAACCTCGTTGGATGATAGCGAGTTTGTTATCCCGACAGATTTGGTGACAAAGGCGTTTCCAAATCTTGTTGAAATGAATATTGATTACTGCAATGATTTGGTGGAGTTGCCTCCCCAACTGTGTGACCTTATTCAATTGAAGAAACTCAGTGTCAGTAATTCTCATAAGCTCTCTGCCTTACCTGAAGACATTGGAAATCTAGTAAATTTAGAGCTGTTGAGGCTTAGGTCTTGTACAGACTTGTCAGAGTTACCCGGCTCGATTAGGAAGCTCAAGAACTTAATCTTGCTTGACATATCTGATTGCTTTAGCATTAAGGAATTGCCTGAAGACATTGGAGAACTGTGCAGTTTAGAAAGGTTCAACATGAGACAGTGCTCGAGATTGAATGAGTTGCCTTCTTCAGTTTTGGATCTTAAACAGTTGAAGGAAGTGACATGTGATGAAGAGACTGAGATTTTATGGGAACCCTTTTTACCCCTTCTCAAGAACATACACATGAAGGTTGTGAAAGAAGACGTGAACCTGAATTGGCTCCACAAGGCACGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

317

Amino Acids

36.23

Weight (kDa)

4.71

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	153 - 234	7.9e-10	Leucine-rich repeat region
LRR_14	PF23598	237 - 286	4.7e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005167)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15150 FvH4_6g50311
malus_domestica	MD02G1164500.v1.1 MD02G1165200.v1.1 MD02G1165700.v1.1 MD15G1263200.v1.1
prunus_persica	Prupe.7G139000_v2.0.a1
pyrus_communis	pycom02g13110 pycom02g13130 pycom15g23970 pycom15g24000
rosa_chinensis	RchiOBHm_Chr2g0104271 RchiOBHm_Chr2g0104291 RchiOBHm_Chr2g0104321 RchiOBHm_Chr2g0104341
rosa_laevigata	RLG00000016962 RLG00000017326
rosa_multiflora	Rmu_co8091214.1_g000001 Rmu_co8203698.1_g000001 Rmu_co8297485.1_g000001 Rmu_co8338119.1_g000001 Rmu_sc0000676.1_g000020 Rmu_sc0002316.1_g000098 Rmu_sc0002414.1_g000006 Rmu_sc0005137.1_g000003
rosa_samantha	Rh2BG177400 Rh2BG178100 Rh2DG176700 Rh2DG177000 Rh7AG022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	148
AclWI	GGATC	3 cut(s)	123, 136, 819
AcsI	RAATTY	3 cut(s)	181, 278, 604
AcuI	CTGAAG	4 cut(s)	231, 603, 747, 786
AfaI	GTAC	2 cut(s)	138, 634
AflIII	ACRYGT	1 cut(s)	836
AgsI	TTSAA	7 cut(s)	283, 470, 533, 538, 763, 787, 826
AjiI	CACGTC	1 cut(s)	919
AjnI	CCWGG	1 cut(s)	49
AjuI	GAANNNNNNNTTGG	4 cut(s)	56, 88, 322, 354
AluBI	AGCT	3 cut(s)	568, 613, 670
AluI	AGCT	3 cut(s)	568, 613, 670
Alw21I	GWGCWC	3 cut(s)	42, 125, 779
Alw26I	GTCTC	2 cut(s)	763, 842
AlwI	GGATC	3 cut(s)	123, 136, 819
Ama87I	CYCGRG	1 cut(s)	778
ApeKI	GCWGC	1 cut(s)	175
ApoI	RAATTY	3 cut(s)	181, 278, 604
AsuC2I	CCSGG	1 cut(s)	654
AsuHPI	GGTGA	1 cut(s)	454
AvaI	CYCGRG	1 cut(s)	778
BamHI	GGATCC	1 cut(s)	128
BbsI	GAAGAC	3 cut(s)	591, 735, 921
Bbv12I	GWGCWC	3 cut(s)	42, 125, 779
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	51
BclI	TGATCA	1 cut(s)	19
BcnI	CCSGG	1 cut(s)	654
BcoDI	GTCTC	2 cut(s)	763, 842
BfaI	CTAG	1 cut(s)	599
BfuAI	ACCTGC	1 cut(s)	148
BisI	GCNGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	177
Bme1390I	CCNGG	2 cut(s)	51, 654
BmeT110I	CYCGRG	1 cut(s)	778
BmgBI	CACGTC	1 cut(s)	919
BmiI	GGNNCC	3 cut(s)	130, 867, 935
BmrFI	CCNGG	2 cut(s)	51, 654
BmsI	GCATC	3 cut(s)	47, 364, 385
BpiI	GAAGAC	3 cut(s)	591, 735, 921
BpmI	CTGGAG	1 cut(s)	72
Bpu10I	CCTNAGC	1 cut(s)	623
BpuEI	CTTGAG	2 cut(s)	656, 869
BpuMI	CCSGG	1 cut(s)	654
BsaWI	WCCGGW	1 cut(s)	125
Bse3DI	GCAATG	2 cut(s)	384, 496
BseBI	CCWGG	1 cut(s)	51
BseGI	GGATG	4 cut(s)	62, 232, 244, 415
BseMI	GCAATG	2 cut(s)	384, 496
BseMII	CTCAG	2 cut(s)	559, 843
BseXI	GCAGC	1 cut(s)	162
BsgI	GTGCAG	1 cut(s)	766
BsiHKAI	GWGCWC	3 cut(s)	42, 125, 779
BsiHKCI	CYCGRG	1 cut(s)	778
BsiSI	CCGG	2 cut(s)	126, 654
BslFI	GGGAC	1 cut(s)	367
BsmAI	GTCTC	2 cut(s)	763, 842
BsmFI	GGGAC	1 cut(s)	367
BsoBI	CYCGRG	1 cut(s)	778
Bsp1286I	GDGCHC	3 cut(s)	42, 125, 779
Bsp1407I	TGTACA	1 cut(s)	632
Bsp143I	GATC	3 cut(s)	19, 128, 811
BspCNI	CTCAG	2 cut(s)	558, 844
BspHI	TCATGA	1 cut(s)	274
BspLI	GGNNCC	3 cut(s)	130, 867, 935
BspMI	ACCTGC	1 cut(s)	148
BspPI	GGATC	3 cut(s)	123, 136, 819
BspQI	GCTCTTC	1 cut(s)	250
BsrDI	GCAATG	2 cut(s)	384, 496
BsrGI	TGTACA	1 cut(s)	632
BssMI	GATC	3 cut(s)	19, 128, 811
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	5 cut(s)	114, 519, 744, 774, 822
Bst6I	CTCTTC	2 cut(s)	250, 840
BstAUI	TGTACA	1 cut(s)	632
BstDEI	CTNAG	3 cut(s)	545, 623, 852
BstF5I	GGATG	4 cut(s)	62, 232, 244, 415
BstKTI	GATC	3 cut(s)	22, 131, 814
BstMAI	GTCTC	2 cut(s)	763, 842
BstMBI	GATC	3 cut(s)	19, 128, 811
BstMWI	GCNNNNNNNGC	1 cut(s)	619
BstNI	CCWGG	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	840
BstSCI	CCNGG	2 cut(s)	49, 652
BstV1I	GCAGC	1 cut(s)	162
BstV2I	GAAGAC	3 cut(s)	591, 735, 921
BstX2I	RGATCY	2 cut(s)	128, 811
BstYI	RGATCY	2 cut(s)	128, 811
BtrI	CACGTC	1 cut(s)	919
BtsCI	GGATG	4 cut(s)	62, 232, 244, 415
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	3 cut(s)	42, 553, 779
BveI	ACCTGC	1 cut(s)	148
CciI	TCATGA	1 cut(s)	274
Csp6I	GTAC	2 cut(s)	137, 633
CviAII	CATG	4 cut(s)	275, 766, 837, 898
CviJI	RGCY	8 cut(s)	175, 243, 568, 613, 622, 657, 670, 934
CviKI_1	RGCY	8 cut(s)	175, 243, 568, 613, 622, 657, 670, 934
CviQI	GTAC	2 cut(s)	137, 633
DdeI	CTNAG	3 cut(s)	545, 623, 852
DpnI	GATC	3 cut(s)	21, 130, 813
DpnII	GATC	3 cut(s)	19, 128, 811
Eam1104I	CTCTTC	2 cut(s)	250, 840
EarI	CTCTTC	2 cut(s)	250, 840
Eco57I	CTGAAG	4 cut(s)	231, 603, 747, 786
Eco88I	CYCGRG	1 cut(s)	778
EcoRI	GAATTC	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	49
FaeI	CATG	4 cut(s)	278, 769, 840, 901
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	4 cut(s)	274, 765, 836, 897
FauNDI	CATATG	1 cut(s)	346
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	176
FokI	GGATG	4 cut(s)	69, 239, 251, 422
Fsp4HI	GCNGC	1 cut(s)	176
FspBI	CTAG	1 cut(s)	599
GluI	GCNGC	1 cut(s)	176
GsuI	CTGGAG	1 cut(s)	72
HapII	CCGG	2 cut(s)	126, 654
Hin1II	CATG	4 cut(s)	278, 769, 840, 901
HinfI	GANTC	2 cut(s)	251, 355
HpaII	CCGG	2 cut(s)	126, 654
HphI	GGTGA	1 cut(s)	454
Hpy166II	GTNNAC	2 cut(s)	359, 922
Hpy188I	TCNGA	4 cut(s)	120, 250, 646, 700
Hpy188III	TCNNGA	9 cut(s)	92, 148, 275, 315, 392, 430, 673, 780, 886
Hpy8I	GTNNAC	2 cut(s)	359, 922
HpyAV	CCTTC	4 cut(s)	807, 820, 890, 895
HpyCH4III	ACNGT	5 cut(s)	114, 519, 744, 774, 822
HpyCH4IV	ACGT	2 cut(s)	918, 946
HpyCH4V	TGCA	7 cut(s)	60, 164, 178, 377, 398, 489, 747
HpyF10VI	GCNNNNNNNGC	1 cut(s)	619
HpyF3I	CTNAG	3 cut(s)	545, 623, 852
HpySE526I	ACGT	2 cut(s)	918, 946
Hsp92II	CATG	4 cut(s)	278, 769, 840, 901
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	19, 128, 811
LguI	GCTCTTC	1 cut(s)	250
LmnI	GCTCC	2 cut(s)	52, 939
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	3 cut(s)	47, 364, 385
MaeI	CTAG	1 cut(s)	599
MaeII	ACGT	2 cut(s)	918, 946
MaeIII	GTNAC	6 cut(s)	307, 442, 521, 648, 832, 947
MalI	GATC	3 cut(s)	21, 130, 813
MboI	GATC	3 cut(s)	19, 128, 811
MboII	GAAGA	9 cut(s)	237, 333, 383, 550, 596, 740, 792, 857, 926
MfeI	CAATTG	1 cut(s)	533
MflI	RGATCY	2 cut(s)	128, 811
MhlI	GDGCHC	3 cut(s)	42, 125, 779
MluCI	AATT	9 cut(s)	181, 278, 292, 350, 533, 556, 604, 719, 928
MlyI	GAGTC	1 cut(s)	364
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	6 cut(s)	47, 91, 219, 412, 519, 612
MseI	TTAA	3 cut(s)	680, 714, 816
MslI	CAYNNNNRTG	1 cut(s)	896
MspI	CCGG	2 cut(s)	126, 654
MspR9I	CCNGG	2 cut(s)	51, 654
MunI	CAATTG	1 cut(s)	533
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	619
NciI	CCSGG	1 cut(s)	654
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	3 cut(s)	19, 128, 811
NlaIII	CATG	4 cut(s)	278, 769, 840, 901
NlaIV	GGNNCC	3 cut(s)	130, 867, 935
NmuCI	GTSAC	3 cut(s)	442, 521, 832
NspI	RCATGY	1 cut(s)	840
PaeR7I	CTCGAG	1 cut(s)	778
PagI	TCATGA	1 cut(s)	274
PciI	ACATGT	1 cut(s)	836
PciSI	GCTCTTC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	177
PleI	GAGTC	1 cut(s)	363
PpsI	GAGTC	1 cut(s)	363
PscI	ACATGT	1 cut(s)	836
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	3 cut(s)	130, 867, 935
PsrI	GAACNNNNNNTAC	2 cut(s)	858, 890
PsuI	RGATCY	2 cut(s)	128, 811
RsaI	GTAC	2 cut(s)	138, 634
RsaNI	GTAC	2 cut(s)	137, 633
RseI	CAYNNNNRTG	1 cut(s)	896
SapI	GCTCTTC	1 cut(s)	250
SaqAI	TTAA	3 cut(s)	680, 714, 816
SatI	GCNGC	1 cut(s)	176
Sau3AI	GATC	3 cut(s)	19, 128, 811
SchI	GAGTC	1 cut(s)	364
ScrFI	CCNGG	2 cut(s)	51, 654
SduI	GDGCHC	3 cut(s)	42, 125, 779
SfaNI	GCATC	3 cut(s)	47, 364, 385
Sfr274I	CTCGAG	1 cut(s)	778
SlaI	CTCGAG	1 cut(s)	778
SmiMI	CAYNNNNRTG	1 cut(s)	896
SmlI	CTYRAG	3 cut(s)	671, 778, 884
SmoI	CTYRAG	3 cut(s)	671, 778, 884
Sse9I	AATT	9 cut(s)	181, 278, 292, 350, 533, 556, 604, 719, 928
SspI	AATATT	1 cut(s)	478
SspMI	CTAG	1 cut(s)	599
StyD4I	CCNGG	2 cut(s)	49, 652
TaaI	ACNGT	5 cut(s)	114, 519, 744, 774, 822
TaiI	ACGT	2 cut(s)	921, 949
TaqI	TCGA	2 cut(s)	659, 779
TasI	AATT	9 cut(s)	181, 278, 292, 350, 533, 556, 604, 719, 928
TatI	WGTACW	1 cut(s)	632
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	3 cut(s)	680, 714, 816
Tru9I	TTAA	3 cut(s)	680, 714, 816
TscAI	CASTG	3 cut(s)	49, 553, 779
TseFI	GTSAC	3 cut(s)	442, 521, 832
TseI	GCWGC	1 cut(s)	175
Tsp45I	GTSAC	3 cut(s)	442, 521, 832
TspRI	CASTG	3 cut(s)	49, 553, 779
XapI	RAATTY	3 cut(s)	181, 278, 604
XceI	RCATGY	1 cut(s)	840
XhoI	CTCGAG	1 cut(s)	778
XspI	CTAG	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.