Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005167

Physical Location & Seq

Genomic Coordinates Forward (+)

15320629 .. 15321441

Gene Structure 813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017326

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGCACAAGATTCAACTTTCAGATGTTGAGGTTCTAGTTTTGAATTTTCAGTCAGAGAACCATGCTTTACCCAAATTTGTGGCGGACATGAAAAACTTGAGGGTCCTAATAGTCACAAATAATGGTTCCTTGCCAGCTGAATTGAGTAACTTTCAACTGCTGGATTCCTTGCCAAATCTGAAGAGAATCAGACTAGAGCGAATTTCAATTCCTTCCATAACCAAGAATCGCATACAGTTGAAGAGTGTAAAGAAGATCTCTTTATTCATTGATCTGATTGAGCTAATGAAGCTCAGTATCACCCACTGTCATAAGCTATCTGCCTTGCCTGAAGAGATAGGAAAGTTGATTAAATTGGTACTGTTGAGGCTAAAGTCTTGTACGGCTTTGGTAACATTTCCAGCCTCAATTAAGAACCTCGAAAAGTTGCAGTTTCTCGACATACCTGATTGCTTCAGCATCAAGGAGTTGCCTGACGACATTGGTGAAATCAGCACTTCAGAAAAGATCAATATGAGACATTGCTCTAGACTGCAAGATCTACCTCCATCAGTTTCTGATCTCGAGCAACTAAATGAAGTGATATGTGATGAGGACACAAAAGAGTTATGGGAGATTTTTGGGCTCAAAATAGACATAAGGGCCCTCAAAGACGAATTCGACCTAGATTGGCTCTCAAAGTTTCAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

231

Amino Acids

26.34

Weight (kDa)

6.0

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005167)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15150 FvH4_6g50311
malus_domestica	MD02G1164500.v1.1 MD02G1165200.v1.1 MD02G1165700.v1.1 MD15G1263200.v1.1
prunus_persica	Prupe.7G139000_v2.0.a1
pyrus_communis	pycom02g13110 pycom02g13130 pycom15g23970 pycom15g24000
rosa_chinensis	RchiOBHm_Chr2g0104271 RchiOBHm_Chr2g0104291 RchiOBHm_Chr2g0104321 RchiOBHm_Chr2g0104341
rosa_laevigata	RLG00000016962 RLG00000017326
rosa_multiflora	Rmu_co8091214.1_g000001 Rmu_co8203698.1_g000001 Rmu_co8297485.1_g000001 Rmu_co8338119.1_g000001 Rmu_sc0000676.1_g000020 Rmu_sc0002316.1_g000098 Rmu_sc0002414.1_g000006 Rmu_sc0005137.1_g000003
rosa_samantha	Rh2BG177400 Rh2BG178100 Rh2DG176700 Rh2DG177000 Rh7AG022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	83
AcsI	RAATTY	4 cut(s)	43, 74, 201, 656
AcuI	CTGAAG	4 cut(s)	200, 351, 439, 483
AfaI	GTAC	2 cut(s)	360, 382
AgsI	TTSAA	5 cut(s)	14, 43, 155, 207, 241
AluBI	AGCT	4 cut(s)	137, 283, 292, 316
AluI	AGCT	4 cut(s)	137, 283, 292, 316
Alw26I	GTCTC	1 cut(s)	511
AlwNI	CAGNNNCTG	1 cut(s)	557
Ama87I	CYCGRG	1 cut(s)	563
AoxI	GGCC	1 cut(s)	642
ApaI	GGGCCC	1 cut(s)	646
ApoI	RAATTY	4 cut(s)	43, 74, 201, 656
ArsI	GACNNNNNNTTYG	1 cut(s)	671
AspS9I	GGNCC	3 cut(s)	103, 642, 643
AsuHPI	GGTGA	2 cut(s)	292, 497
AvaI	CYCGRG	1 cut(s)	563
AvaII	GGWCC	1 cut(s)	103
BaeGI	GKGCMC	1 cut(s)	646
BanII	GRGCYC	2 cut(s)	627, 646
BccI	CCATC	1 cut(s)	556
BceAI	ACGGC	1 cut(s)	399
BcoDI	GTCTC	1 cut(s)	511
BfaI	CTAG	4 cut(s)	35, 194, 528, 665
BglII	AGATCT	2 cut(s)	255, 538
Bme18I	GGWCC	1 cut(s)	103
BmeT110I	CYCGRG	1 cut(s)	563
BmgT120I	GGNCC	3 cut(s)	103, 642, 643
BmiI	GGNNCC	3 cut(s)	104, 127, 644
BmsI	GCATC	1 cut(s)	468
BpuEI	CTTGAG	1 cut(s)	118
Bse3DI	GCAATG	1 cut(s)	520
BseMI	GCAATG	1 cut(s)	520
BseMII	CTCAG	1 cut(s)	307
BseSI	GKGCMC	1 cut(s)	646
BshFI	GGCC	1 cut(s)	644
BsiHKCI	CYCGRG	1 cut(s)	563
BsmAI	GTCTC	1 cut(s)	511
BsnI	GGCC	1 cut(s)	644
BsoBI	CYCGRG	1 cut(s)	563
Bsp120I	GGGCCC	1 cut(s)	642
Bsp1286I	GDGCHC	2 cut(s)	627, 646
Bsp143I	GATC	5 cut(s)	255, 271, 507, 538, 559
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	644
BspCNI	CTCAG	1 cut(s)	306
BspLI	GGNNCC	3 cut(s)	104, 127, 644
BsrDI	GCAATG	1 cut(s)	520
BssMI	GATC	5 cut(s)	255, 271, 507, 538, 559
Bst4CI	ACNGT	3 cut(s)	237, 308, 363
Bst6I	CTCTTC	3 cut(s)	176, 236, 327
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	293
BstKTI	GATC	5 cut(s)	258, 274, 510, 541, 562
BstMAI	GTCTC	1 cut(s)	511
BstMBI	GATC	5 cut(s)	255, 271, 507, 538, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstSLI	GKGCMC	1 cut(s)	646
BstX2I	RGATCY	2 cut(s)	255, 538
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	2 cut(s)	255, 538
BsuRI	GGCC	1 cut(s)	644
BtsIMutI	CAGTG	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	135
CaiI	CAGNNNCTG	1 cut(s)	557
Cfr13I	GGNCC	3 cut(s)	103, 642, 643
Csp6I	GTAC	2 cut(s)	359, 381
CviAII	CATG	2 cut(s)	62, 88
CviQI	GTAC	2 cut(s)	359, 381
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	5 cut(s)	257, 273, 509, 540, 561
DpnII	GATC	5 cut(s)	255, 271, 507, 538, 559
Eam1104I	CTCTTC	3 cut(s)	176, 236, 327
EarI	CTCTTC	3 cut(s)	176, 236, 327
EciI	GGCGGA	1 cut(s)	98
Eco24I	GRGCYC	2 cut(s)	627, 646
Eco47I	GGWCC	1 cut(s)	103
Eco57I	CTGAAG	4 cut(s)	200, 351, 439, 483
Eco88I	CYCGRG	1 cut(s)	563
EcoO109I	RGGNCCY	3 cut(s)	103, 642, 643
EcoRI	GAATTC	1 cut(s)	656
EcoT38I	GRGCYC	2 cut(s)	627, 646
FaeI	CATG	2 cut(s)	65, 91
FatI	CATG	2 cut(s)	61, 87
FriOI	GRGCYC	2 cut(s)	627, 646
FspBI	CTAG	4 cut(s)	35, 194, 528, 665
HaeIII	GGCC	1 cut(s)	644
Hin1II	CATG	2 cut(s)	65, 91
HinfI	GANTC	4 cut(s)	10, 164, 186, 226
HphI	GGTGA	2 cut(s)	292, 497
Hpy188I	TCNGA	7 cut(s)	22, 55, 180, 191, 276, 502, 559
Hpy188III	TCNNGA	4 cut(s)	437, 528, 563, 690
HpyAV	CCTTC	1 cut(s)	222
HpyCH4III	ACNGT	3 cut(s)	237, 308, 363
HpyCH4V	TGCA	3 cut(s)	4, 430, 535
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
HpyF3I	CTNAG	1 cut(s)	293
Hsp92II	CATG	2 cut(s)	65, 91
Kzo9I	GATC	5 cut(s)	255, 271, 507, 538, 559
LpnPI	CCDG	6 cut(s)	146, 147, 342, 414, 459, 486
LweI	GCATC	1 cut(s)	468
MaeI	CTAG	4 cut(s)	35, 194, 528, 665
MaeIII	GTNAC	3 cut(s)	112, 146, 391
MalI	GATC	5 cut(s)	257, 273, 509, 540, 561
MboI	GATC	5 cut(s)	255, 271, 507, 538, 559
MboII	GAAGA	4 cut(s)	193, 253, 265, 344
MflI	RGATCY	2 cut(s)	255, 538
MhlI	GDGCHC	2 cut(s)	627, 646
MluCI	AATT	8 cut(s)	43, 74, 140, 201, 207, 353, 408, 656
MnlI	CCTC	8 cut(s)	22, 93, 360, 415, 428, 555, 586, 656
MseI	TTAA	2 cut(s)	351, 411
MspA1I	CMGCKG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	289
NdeII	GATC	5 cut(s)	255, 271, 507, 538, 559
NlaIII	CATG	2 cut(s)	65, 91
NlaIV	GGNNCC	3 cut(s)	104, 127, 644
NmuCI	GTSAC	1 cut(s)	112
PaeR7I	CTCGAG	1 cut(s)	563
PfeI	GAWTC	4 cut(s)	10, 164, 186, 226
PpuMI	RGGWCCY	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	103
PspN4I	GGNNCC	3 cut(s)	104, 127, 644
PspOMI	GGGCCC	1 cut(s)	642
PspPI	GGNCC	3 cut(s)	103, 642, 643
PspPPI	RGGWCCY	1 cut(s)	103
PstNI	CAGNNNCTG	1 cut(s)	557
PsuI	RGATCY	2 cut(s)	255, 538
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	2 cut(s)	360, 382
RsaNI	GTAC	2 cut(s)	359, 381
SaqAI	TTAA	2 cut(s)	351, 411
Sau3AI	GATC	5 cut(s)	255, 271, 507, 538, 559
Sau96I	GGNCC	3 cut(s)	103, 642, 643
SduI	GDGCHC	2 cut(s)	627, 646
SetI	ASST	9 cut(s)	33, 139, 285, 294, 318, 420, 448, 547, 666
SfaNI	GCATC	1 cut(s)	468
Sfr274I	CTCGAG	1 cut(s)	563
SinI	GGWCC	1 cut(s)	103
SlaI	CTCGAG	1 cut(s)	563
SmlI	CTYRAG	2 cut(s)	97, 563
SmoI	CTYRAG	2 cut(s)	97, 563
Sse9I	AATT	8 cut(s)	43, 74, 140, 201, 207, 353, 408, 656
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	4 cut(s)	35, 194, 528, 665
TaaI	ACNGT	3 cut(s)	237, 308, 363
TaqI	TCGA	4 cut(s)	420, 438, 564, 660
TasI	AATT	8 cut(s)	43, 74, 140, 201, 207, 353, 408, 656
TfiI	GAWTC	4 cut(s)	10, 164, 186, 226
Tru1I	TTAA	2 cut(s)	351, 411
Tru9I	TTAA	2 cut(s)	351, 411
TscAI	CASTG	1 cut(s)	311
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	4 cut(s)	104, 256, 302, 591
TspRI	CASTG	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	4 cut(s)	43, 74, 201, 656
XbaI	TCTAGA	1 cut(s)	527
XhoI	CTCGAG	1 cut(s)	563
XspI	CTAG	4 cut(s)	35, 194, 528, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.