Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005167

Physical Location & Seq

Genomic Coordinates Forward (+)

22494484 .. 22496064

Gene Structure 1581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1263200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGCTTCGACAGCTGGCTATCTACAATGCGAAACTAGACCCAATAGAAGATAGAAAAAGACTGATTGTCGTAAGTGGACACAATCAACCCAAGTGGTTGACGGAACAGAAGTCCCAACCCATCAATGCTCGCCTCTTATCTATCTCCTCTGATGGAATGTTCTCAGGAGAATGGCAGAGCGTTCATGTACCACAAGTTGAGGTTCTAGTTTTGAATTTTAAGACAGAGAACAATGCCTTGCCTGAATTTGTGGAGAAAATTGGTAACTTGAAGGTTTTAATAGTCACAAACTATGGTTTCTTACCTACTGGTTTGAATAATTTTGATCTTCTGGGTTCATTATCAAATCTAAAGAGAATCAGGTTAGAGCGCATATCAGTTCCTTCCATTACCAAGAACTTCGTACCATTGAAGAGCCTGAAGAAGATATCTTTATTCATGTGTAACATCGGTCAAGCTTTCTGCAATTGTTCCATCAAAATTTCAGATGCATGGCCTAGTCTAGAGGAAATGAACATCGACTATTGCCATGATCTGGTGTCATTGCCGGCCGAGCTCTGTGATTTTGTTTATCTGAAGAAACTCAGTATCACCAACTGCCATAAGCTATCCGCCTTGCCTGATAAGATTGAAAAGCTTGAGAATTTGGAGGTGTTGAGGCTAAGGTCCTGCACAGACTTGGTAAGCCTTCCGGGCTCGATTGAGAAACTCAATAAGCTGTACTTTCTTGACATATACAATTGTATCAGCATTAAGGAGTTGCCTGAAAACATCGGCGAAATGAGTGGTTTAAGAAAGATAAACATGGGACAGTGCTCGAGATTAGAAGAGTTGCCTCTGTCAGTCTGGGATCTTGATCAGCAGTTAGAGGAAGTGATTTGTGATGCAGGGACAGAATATTTGTGGAAACCCTTCTTAGCTAGTTTCAGAGACAAAATCAAGGTGGCAAAAGAAAAAACCAATTTGAATTGGCTCGAAAAGCCTCAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

331

Amino Acids

37.68

Weight (kDa)

6.89

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	184 - 272	3.4e-11	Leucine-rich repeat region
LRR_13	PF23286	213 - 286	1.4e-06	Disease resistance protein RPS4B-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005167)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15150 FvH4_6g50311
malus_domestica	MD02G1164500.v1.1 MD02G1165200.v1.1 MD02G1165700.v1.1 MD15G1263200.v1.1
prunus_persica	Prupe.7G139000_v2.0.a1
pyrus_communis	pycom02g13110 pycom02g13130 pycom15g23970 pycom15g24000
rosa_chinensis	RchiOBHm_Chr2g0104271 RchiOBHm_Chr2g0104291 RchiOBHm_Chr2g0104321 RchiOBHm_Chr2g0104341
rosa_laevigata	RLG00000016962 RLG00000017326
rosa_multiflora	Rmu_co8091214.1_g000001 Rmu_co8203698.1_g000001 Rmu_co8297485.1_g000001 Rmu_co8338119.1_g000001 Rmu_sc0000676.1_g000020 Rmu_sc0002316.1_g000098 Rmu_sc0002414.1_g000006 Rmu_sc0005137.1_g000003
rosa_samantha	Rh2BG177400 Rh2BG178100 Rh2DG176700 Rh2DG177000 Rh7AG022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	535
AciI	CCGC	1 cut(s)	612
AclWI	GGATC	1 cut(s)	858
AcoI	YGGCCR	1 cut(s)	549
AcsI	RAATTY	4 cut(s)	214, 245, 480, 643
AcuI	CTGAAG	2 cut(s)	440, 596
AfaI	GTAC	3 cut(s)	189, 405, 722
AfiI	CCNNNNNNNGG	1 cut(s)	535
AgsI	TTSAA	6 cut(s)	214, 271, 316, 412, 632, 967
AhdI	GACNNNNNGTC	1 cut(s)	65
AluBI	AGCT	7 cut(s)	13, 458, 556, 607, 637, 718, 920
AluI	AGCT	7 cut(s)	13, 458, 556, 607, 637, 718, 920
Alw21I	GWGCWC	2 cut(s)	558, 818
Alw26I	GTCTC	1 cut(s)	924
AlwI	GGATC	1 cut(s)	858
Ama87I	CYCGRG	1 cut(s)	817
AoxI	GGCC	2 cut(s)	494, 549
ApoI	RAATTY	4 cut(s)	214, 245, 480, 643
ArsI	GACNNNNNNTTYG	2 cut(s)	883, 915
Asp700I	GAANNNNTTC	1 cut(s)	911
AspLEI	GCGC	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	666
AsuC2I	CCSGG	1 cut(s)	693
AsuHPI	GGTGA	1 cut(s)	583
AvaI	CYCGRG	1 cut(s)	817
AvaII	GGWCC	1 cut(s)	666
BaeI	ACNNNNGTAYC	2 cut(s)	727, 760
BanII	GRGCYC	2 cut(s)	558, 698
Bbv12I	GWGCWC	2 cut(s)	558, 818
BccI	CCATC	3 cut(s)	128, 146, 482
BclI	TGATCA	1 cut(s)	856
BcnI	CCSGG	1 cut(s)	693
BcoDI	GTCTC	1 cut(s)	924
BfaI	CTAG	5 cut(s)	35, 206, 498, 503, 921
BglI	GCCNNNNNGGC	1 cut(s)	693
Bme1390I	CCNGG	1 cut(s)	693
Bme18I	GGWCC	1 cut(s)	666
BmeRI	GACNNNNNGTC	1 cut(s)	65
BmeT110I	CYCGRG	1 cut(s)	817
BmgT120I	GGNCC	1 cut(s)	666
BmrFI	CCNGG	1 cut(s)	693
BmsI	GCATC	2 cut(s)	478, 874
Bpu10I	CCTNAGC	1 cut(s)	662
BpuEI	CTTGAG	1 cut(s)	659
BpuMI	CCSGG	1 cut(s)	693
BsaBI	GATNNNNATC	1 cut(s)	855
Bsc4I	CCNNNNNNNGG	1 cut(s)	535
Bse118I	RCCGGY	1 cut(s)	547
Bse1I	ACTGG	1 cut(s)	313
Bse3DI	GCAATG	1 cut(s)	542
Bse8I	GATNNNNATC	1 cut(s)	855
BseJI	GATNNNNATC	1 cut(s)	855
BseLI	CCNNNNNNNGG	1 cut(s)	535
BseMI	GCAATG	1 cut(s)	542
BseMII	CTCAG	2 cut(s)	177, 598
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	1 cut(s)	136
BseX3I	CGGCCG	1 cut(s)	549
BsgI	GTGCAG	1 cut(s)	655
Bsh1285I	CGRYCG	1 cut(s)	552
BshFI	GGCC	2 cut(s)	496, 551
BsiEI	CGRYCG	1 cut(s)	552
BsiHKAI	GWGCWC	2 cut(s)	558, 818
BsiHKCI	CYCGRG	1 cut(s)	817
BsiSI	CCGG	2 cut(s)	548, 692
BslFI	GGGAC	3 cut(s)	97, 822, 904
BslI	CCNNNNNNNGG	1 cut(s)	535
BsmAI	GTCTC	1 cut(s)	924
BsmFI	GGGAC	3 cut(s)	97, 822, 904
BsnI	GGCC	2 cut(s)	496, 551
BsoBI	CYCGRG	1 cut(s)	817
Bsp1286I	GDGCHC	3 cut(s)	558, 698, 818
Bsp143I	GATC	4 cut(s)	325, 532, 850, 856
BspACI	CCGC	1 cut(s)	612
BspANI	GGCC	2 cut(s)	496, 551
BspCNI	CTCAG	2 cut(s)	176, 597
BspPI	GGATC	1 cut(s)	858
BspQI	GCTCTTC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	542
BsrFI	RCCGGY	1 cut(s)	547
BsrI	ACTGG	1 cut(s)	313
BssAI	RCCGGY	1 cut(s)	547
BssMI	GATC	4 cut(s)	325, 532, 850, 856
Bst4CI	ACNGT	1 cut(s)	813
Bst6I	CTCTTC	2 cut(s)	407, 822
BstC8I	GCNNGC	3 cut(s)	15, 130, 549
BstDEI	CTNAG	5 cut(s)	163, 584, 662, 916, 984
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	4 cut(s)	328, 535, 853, 859
BstMAI	GTCTC	1 cut(s)	924
BstMBI	GATC	4 cut(s)	325, 532, 850, 856
BstMCI	CGRYCG	1 cut(s)	552
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 553, 693, 979
BstSCI	CCNGG	1 cut(s)	691
BstX2I	RGATCY	1 cut(s)	850
BstYI	RGATCY	1 cut(s)	850
BstZI	CGGCCG	1 cut(s)	549
BsuRI	GGCC	2 cut(s)	496, 551
BtsIMutI	CAGTG	1 cut(s)	818
Cac8I	GCNNGC	3 cut(s)	15, 130, 549
CfoI	GCGC	1 cut(s)	372
Cfr10I	RCCGGY	1 cut(s)	547
Cfr13I	GGNCC	1 cut(s)	666
Csp6I	GTAC	3 cut(s)	188, 404, 721
CspCI	CAANNNNNGTGG	2 cut(s)	74, 109
CviAII	CATG	5 cut(s)	185, 439, 492, 530, 805
CviQI	GTAC	3 cut(s)	188, 404, 721
DdeI	CTNAG	5 cut(s)	163, 584, 662, 916, 984
DpnI	GATC	4 cut(s)	327, 534, 852, 858
DpnII	GATC	4 cut(s)	325, 532, 850, 856
DriI	GACNNNNNGTC	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	549
EagI	CGGCCG	1 cut(s)	549
Eam1104I	CTCTTC	2 cut(s)	407, 822
Eam1105I	GACNNNNNGTC	1 cut(s)	65
EarI	CTCTTC	2 cut(s)	407, 822
EciI	GGCGGA	1 cut(s)	601
Ecl136II	GAGCTC	1 cut(s)	556
EclXI	CGGCCG	1 cut(s)	549
Eco24I	GRGCYC	2 cut(s)	558, 698
Eco32I	GATATC	1 cut(s)	429
Eco47I	GGWCC	1 cut(s)	666
Eco52I	CGGCCG	1 cut(s)	549
Eco53kI	GAGCTC	1 cut(s)	556
Eco57I	CTGAAG	2 cut(s)	440, 596
Eco88I	CYCGRG	1 cut(s)	817
EcoICRI	GAGCTC	1 cut(s)	556
EcoO109I	RGGNCCY	1 cut(s)	666
EcoRV	GATATC	1 cut(s)	429
EcoT22I	ATGCAT	1 cut(s)	493
EcoT38I	GRGCYC	2 cut(s)	558, 698
FaeI	CATG	5 cut(s)	188, 442, 495, 533, 808
FalI	AAGNNNNNCTT	2 cut(s)	707, 739
FaqI	GGGAC	3 cut(s)	97, 822, 904
FatI	CATG	5 cut(s)	184, 438, 491, 529, 804
FbaI	TGATCA	1 cut(s)	856
FriOI	GRGCYC	2 cut(s)	558, 698
FspBI	CTAG	5 cut(s)	35, 206, 498, 503, 921
GlaI	GCGC	1 cut(s)	371
HaeIII	GGCC	2 cut(s)	496, 551
HapII	CCGG	2 cut(s)	548, 692
HhaI	GCGC	1 cut(s)	372
Hin1II	CATG	5 cut(s)	188, 442, 495, 533, 808
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HindIII	AAGCTT	2 cut(s)	456, 635
HinfI	GANTC	1 cut(s)	357
HpaII	CCGG	2 cut(s)	548, 692
HphI	GGTGA	1 cut(s)	583
Hpy166II	GTNNAC	2 cut(s)	77, 99
Hpy188I	TCNGA	4 cut(s)	151, 487, 576, 929
Hpy188III	TCNNGA	5 cut(s)	165, 503, 728, 819, 854
Hpy8I	GTNNAC	2 cut(s)	77, 99
HpyAV	CCTTC	4 cut(s)	265, 393, 698, 922
HpyCH4III	ACNGT	1 cut(s)	813
HpyCH4V	TGCA	4 cut(s)	465, 491, 672, 887
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 553, 693, 979
HpyF3I	CTNAG	5 cut(s)	163, 584, 662, 916, 984
Hsp92II	CATG	5 cut(s)	188, 442, 495, 533, 808
HspAI	GCGC	1 cut(s)	370
KroI	GCCGGC	1 cut(s)	547
KroNI	GCCGGC	1 cut(s)	549
Ksp22I	TGATCA	1 cut(s)	856
Kzo9I	GATC	4 cut(s)	325, 532, 850, 856
LguI	GCTCTTC	1 cut(s)	407
LweI	GCATC	2 cut(s)	478, 874
MaeI	CTAG	5 cut(s)	35, 206, 498, 503, 921
MaeIII	GTNAC	3 cut(s)	263, 283, 443
MalI	GATC	4 cut(s)	327, 534, 852, 858
MboI	GATC	4 cut(s)	325, 532, 850, 856
MboII	GAAGA	7 cut(s)	59, 320, 424, 433, 436, 589, 839
MfeI	CAATTG	2 cut(s)	466, 739
MflI	RGATCY	1 cut(s)	850
MhlI	GDGCHC	3 cut(s)	558, 698, 818
MnlI	CCTC	9 cut(s)	143, 157, 193, 499, 643, 651, 846, 862, 993
Mph1103I	ATGCAT	1 cut(s)	493
MroNI	GCCGGC	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	911
MseI	TTAA	4 cut(s)	219, 278, 753, 791
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	2 cut(s)	548, 692
MspR9I	CCNGG	1 cut(s)	693
MunI	CAATTG	2 cut(s)	466, 739
MwoI	GCNNNNNNNGC	4 cut(s)	10, 553, 693, 979
NaeI	GCCGGC	1 cut(s)	549
NciI	CCSGG	1 cut(s)	693
NdeII	GATC	4 cut(s)	325, 532, 850, 856
NgoMIV	GCCGGC	1 cut(s)	547
NlaIII	CATG	5 cut(s)	188, 442, 495, 533, 808
NmeAIII	GCCGAG	1 cut(s)	577
NmuCI	GTSAC	1 cut(s)	283
NsiI	ATGCAT	1 cut(s)	493
PaeR7I	CTCGAG	1 cut(s)	817
PciSI	GCTCTTC	1 cut(s)	407
PdiI	GCCGGC	1 cut(s)	549
PdmI	GAANNNNTTC	1 cut(s)	911
PfeI	GAWTC	1 cut(s)	357
PflMI	CCANNNNNTGG	1 cut(s)	535
PpuMI	RGGWCCY	1 cut(s)	666
Psp124BI	GAGCTC	1 cut(s)	558
Psp5II	RGGWCCY	1 cut(s)	666
PspPI	GGNCC	1 cut(s)	666
PspPPI	RGGWCCY	1 cut(s)	666
PsuI	RGATCY	1 cut(s)	850
PvuII	CAGCTG	1 cut(s)	13
RsaI	GTAC	3 cut(s)	189, 405, 722
RsaNI	GTAC	3 cut(s)	188, 404, 721
SacI	GAGCTC	1 cut(s)	558
SapI	GCTCTTC	1 cut(s)	407
SaqAI	TTAA	4 cut(s)	219, 278, 753, 791
Sau3AI	GATC	4 cut(s)	325, 532, 850, 856
Sau96I	GGNCC	1 cut(s)	666
ScrFI	CCNGG	1 cut(s)	693
SduI	GDGCHC	3 cut(s)	558, 698, 818
SfaNI	GCATC	2 cut(s)	478, 874
Sfr274I	CTCGAG	1 cut(s)	817
SinI	GGWCC	1 cut(s)	666
SlaI	CTCGAG	1 cut(s)	817
SmlI	CTYRAG	2 cut(s)	638, 817
SmoI	CTYRAG	2 cut(s)	638, 817
SsiI	CCGC	1 cut(s)	612
SspI	AATATT	1 cut(s)	899
SspMI	CTAG	5 cut(s)	35, 206, 498, 503, 921
SstI	GAGCTC	1 cut(s)	558
StyD4I	CCNGG	1 cut(s)	691
TaaI	ACNGT	1 cut(s)	813
TaqI	TCGA	5 cut(s)	7, 519, 698, 818, 975
TaqII	GACCGA	1 cut(s)	440
TatI	WGTACW	1 cut(s)	720
TfiI	GAWTC	1 cut(s)	357
Tru1I	TTAA	4 cut(s)	219, 278, 753, 791
Tru9I	TTAA	4 cut(s)	219, 278, 753, 791
TscAI	CASTG	1 cut(s)	818
TseFI	GTSAC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	4 cut(s)	173, 327, 427, 527
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	818
Van91I	CCANNNNNTGG	1 cut(s)	535
VpaK11BI	GGWCC	1 cut(s)	666
XapI	RAATTY	4 cut(s)	214, 245, 480, 643
XbaI	TCTAGA	1 cut(s)	502
XhoI	CTCGAG	1 cut(s)	817
XmnI	GAANNNNTTC	1 cut(s)	911
XspI	CTAG	5 cut(s)	35, 206, 498, 503, 921
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.