Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005167

Physical Location & Seq

Genomic Coordinates Forward (+)

15720453 .. 15720980

Gene Structure 528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47859

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTGTAGCATCAGTCAAGCTTTCAGCAACTCTTCCTTCCAAATTTCATATGCATTTCCAAATTTAGAGGAACTGAACATTGACAGTGACTTGGTGGAATTGTCTGGTGATCTCAGTGATCTGATTGAGCTAAAGAAGCTCAGTATCACCCACTGTCACAAGCTATCTGCCTTGCCTGAAGTGATAGGAAATTTGATCAAATTGGAAGTCTTGAGGCTAAAGTCATGTTCAGACTTGGTAACATTTCCAGCCTCAATTAAGAACCTCGGAAAGTTGCAGTTTCTCGACATATCTGATTGCTTCAGCATCAAGGAGTTGCCTGAAGACATTGGTGAAATCAGCACTTTAAAAAAGATCAATATGAGACAGTGCTCTAGACTGCAAGATCTACCTGATTCAGTTTATGATCTCGAGCAACTAGAGGAAGTGATATTTGATGAGAAAACAAGAGACTTGTGGGAGCTTTTCCGGCTCAAAATAGAGATTAGGGTCCTCAAAGACGAATTCAACCTGGATTGGCTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

175

Amino Acids

20.13

Weight (kDa)

4.6

Isoelectric Point (pI)

47.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	36 - 99	2.5e-07	Leucine-rich repeat region
LRR_13	PF23286	66 - 139	1.7e-06	Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14	PF23598	85 - 150	2.3e-08	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005167)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15150 FvH4_6g50311
malus_domestica	MD02G1164500.v1.1 MD02G1165200.v1.1 MD02G1165700.v1.1 MD15G1263200.v1.1
prunus_persica	Prupe.7G139000_v2.0.a1
pyrus_communis	pycom02g13110 pycom02g13130 pycom15g23970 pycom15g24000
rosa_chinensis	RchiOBHm_Chr2g0104271 RchiOBHm_Chr2g0104291 RchiOBHm_Chr2g0104321 RchiOBHm_Chr2g0104341
rosa_laevigata	RLG00000016962 RLG00000017326
rosa_multiflora	Rmu_co8091214.1_g000001 Rmu_co8203698.1_g000001 Rmu_co8297485.1_g000001 Rmu_co8338119.1_g000001 Rmu_sc0000676.1_g000020 Rmu_sc0002316.1_g000098 Rmu_sc0002414.1_g000006 Rmu_sc0005137.1_g000003
rosa_samantha	Rh2BG177400 Rh2BG178100 Rh2DG176700 Rh2DG177000 Rh7AG022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	4 cut(s)	42, 61, 190, 503
AcuI	CTGAAG	3 cut(s)	198, 286, 342
AgsI	TTSAA	1 cut(s)	508
AjnI	CCWGG	1 cut(s)	510
AluBI	AGCT	5 cut(s)	20, 130, 139, 163, 463
AluI	AGCT	5 cut(s)	20, 130, 139, 163, 463
Alw21I	GWGCWC	1 cut(s)	374
Alw26I	GTCTC	2 cut(s)	358, 444
Ama87I	CYCGRG	1 cut(s)	410
ApoI	RAATTY	4 cut(s)	42, 61, 190, 503
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
AspS9I	GGNCC	1 cut(s)	490
AsuHPI	GGTGA	3 cut(s)	119, 139, 344
AvaI	CYCGRG	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	490
BbsI	GAAGAC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	374
BciT130I	CCWGG	1 cut(s)	512
BclI	TGATCA	1 cut(s)	195
BcoDI	GTCTC	2 cut(s)	358, 444
BfaI	CTAG	2 cut(s)	375, 419
BglII	AGATCT	1 cut(s)	385
Bme1390I	CCNGG	1 cut(s)	512
Bme18I	GGWCC	1 cut(s)	490
BmeT110I	CYCGRG	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	490
BmiI	GGNNCC	1 cut(s)	491
BmrFI	CCNGG	1 cut(s)	512
BmsI	GCATC	2 cut(s)	18, 315
BpiI	GAAGAC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	1 cut(s)	265
BseMII	CTCAG	2 cut(s)	127, 154
BsiHKAI	GWGCWC	1 cut(s)	374
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	1 cut(s)	469
BsmAI	GTCTC	2 cut(s)	358, 444
BsoBI	CYCGRG	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	374
Bsp143I	GATC	6 cut(s)	109, 118, 195, 354, 385, 406
BspCNI	CTCAG	2 cut(s)	126, 153
BspLI	GGNNCC	1 cut(s)	491
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	6 cut(s)	109, 118, 195, 354, 385, 406
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	3 cut(s)	86, 155, 369
Bst6I	CTCTTC	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	113, 140
BstKTI	GATC	6 cut(s)	112, 121, 198, 357, 388, 409
BstMAI	GTCTC	2 cut(s)	358, 444
BstMBI	GATC	6 cut(s)	109, 118, 195, 354, 385, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 469
BstNI	CCWGG	1 cut(s)	512
BstSCI	CCNGG	1 cut(s)	510
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BtsIMutI	CAGTG	4 cut(s)	91, 121, 151, 374
Cfr13I	GGNCC	1 cut(s)	490
CviAII	CATG	1 cut(s)	225
CviJI	RGCY	9 cut(s)	20, 130, 139, 163, 217, 251, 463, 472, 520
CviKI_1	RGCY	9 cut(s)	20, 130, 139, 163, 217, 251, 463, 472, 520
DdeI	CTNAG	2 cut(s)	113, 140
DpnI	GATC	6 cut(s)	111, 120, 197, 356, 387, 408
DpnII	GATC	6 cut(s)	109, 118, 195, 354, 385, 406
DraI	TTTAAA	1 cut(s)	348
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	490
Eco57I	CTGAAG	3 cut(s)	198, 286, 342
Eco88I	CYCGRG	1 cut(s)	410
EcoO109I	RGGNCCY	1 cut(s)	490
EcoRI	GAATTC	1 cut(s)	503
EcoRII	CCWGG	1 cut(s)	510
EcoT22I	ATGCAT	1 cut(s)	55
FaeI	CATG	1 cut(s)	228
FaiI	YATR	6 cut(s)	49, 51, 226, 290, 362, 405
FatI	CATG	1 cut(s)	224
FauNDI	CATATG	1 cut(s)	49
FbaI	TGATCA	1 cut(s)	195
FspBI	CTAG	2 cut(s)	375, 419
HapII	CCGG	1 cut(s)	469
Hin1II	CATG	1 cut(s)	228
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	1 cut(s)	395
HpaII	CCGG	1 cut(s)	469
HphI	GGTGA	3 cut(s)	119, 139, 344
Hpy188I	TCNGA	4 cut(s)	123, 232, 269, 295
Hpy188III	TCNNGA	4 cut(s)	211, 284, 375, 410
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	3 cut(s)	86, 155, 369
HpyCH4V	TGCA	3 cut(s)	53, 277, 382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 469
HpyF3I	CTNAG	2 cut(s)	113, 140
Hsp92II	CATG	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	195
Kzo9I	GATC	6 cut(s)	109, 118, 195, 354, 385, 406
LmnI	GCTCC	1 cut(s)	460
LpnPI	CCDG	8 cut(s)	90, 189, 261, 333, 405, 482, 497, 524
LweI	GCATC	2 cut(s)	18, 315
MaeI	CTAG	2 cut(s)	375, 419
MaeIII	GTNAC	3 cut(s)	86, 155, 238
MalI	GATC	6 cut(s)	111, 120, 197, 356, 387, 408
MboI	GATC	6 cut(s)	109, 118, 195, 354, 385, 406
MboII	GAAGA	2 cut(s)	24, 335
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	374
MluCI	AATT	7 cut(s)	42, 61, 98, 190, 200, 255, 503
MnlI	CCTC	6 cut(s)	61, 207, 262, 275, 415, 503
Mph1103I	ATGCAT	1 cut(s)	55
MseI	TTAA	2 cut(s)	258, 347
MspI	CCGG	1 cut(s)	469
MspR9I	CCNGG	1 cut(s)	512
MvaI	CCWGG	1 cut(s)	512
MwoI	GCNNNNNNNGC	2 cut(s)	136, 469
NdeI	CATATG	1 cut(s)	49
NdeII	GATC	6 cut(s)	109, 118, 195, 354, 385, 406
NlaIII	CATG	1 cut(s)	228
NlaIV	GGNNCC	1 cut(s)	491
NmuCI	GTSAC	2 cut(s)	86, 155
NsiI	ATGCAT	1 cut(s)	55
PaeR7I	CTCGAG	1 cut(s)	410
PfeI	GAWTC	1 cut(s)	395
PpuMI	RGGWCCY	1 cut(s)	490
Psp5II	RGGWCCY	1 cut(s)	490
Psp6I	CCWGG	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	1 cut(s)	491
PspPI	GGNCC	1 cut(s)	490
PspPPI	RGGWCCY	1 cut(s)	490
PsuI	RGATCY	1 cut(s)	385
SaqAI	TTAA	2 cut(s)	258, 347
Sau3AI	GATC	6 cut(s)	109, 118, 195, 354, 385, 406
Sau96I	GGNCC	1 cut(s)	490
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	1 cut(s)	374
SetI	ASST	8 cut(s)	22, 132, 141, 165, 267, 394, 465, 513
SfaNI	GCATC	2 cut(s)	18, 315
Sfr274I	CTCGAG	1 cut(s)	410
SinI	GGWCC	1 cut(s)	490
SlaI	CTCGAG	1 cut(s)	410
SmlI	CTYRAG	2 cut(s)	211, 410
SmoI	CTYRAG	2 cut(s)	211, 410
Sse9I	AATT	7 cut(s)	42, 61, 98, 190, 200, 255, 503
SspMI	CTAG	2 cut(s)	375, 419
StyD4I	CCNGG	1 cut(s)	510
TaaI	ACNGT	3 cut(s)	86, 155, 369
TaqI	TCGA	2 cut(s)	285, 411
TasI	AATT	7 cut(s)	42, 61, 98, 190, 200, 255, 503
TfiI	GAWTC	1 cut(s)	395
Tru1I	TTAA	2 cut(s)	258, 347
Tru9I	TTAA	2 cut(s)	258, 347
TscAI	CASTG	4 cut(s)	91, 121, 158, 374
TseFI	GTSAC	2 cut(s)	86, 155
Tsp45I	GTSAC	2 cut(s)	86, 155
TspDTI	ATGAA	1 cut(s)	36
TspRI	CASTG	4 cut(s)	91, 121, 158, 374
VpaK11BI	GGWCC	1 cut(s)	490
XapI	RAATTY	4 cut(s)	42, 61, 190, 503
XbaI	TCTAGA	1 cut(s)	374
XhoI	CTCGAG	1 cut(s)	410
XspI	CTAG	2 cut(s)	375, 419
Zsp2I	ATGCAT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.