Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8338119.1

Orthogroup ID

OG0005167

Physical Location & Seq

Genomic Coordinates Reverse (-)

178 .. 669

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8338119.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgtcggatgcatttccgaatttggaggaattaaacattcagttctgttttaaggttaaagctaaagaatttcttgcggagtgctgcaatctgattcatttaaagaagattagtatcgtcagccgttttgggttacgtcacttgcccgaagaaatcggaaatttggtcaacttagaagtactgaggctgtcttgtaaatatctttcaaagcttcccagttccatcagcaacctcaaaaagttaaacttccttgacatatgtggatgcgcccgcattgcgttgcctaaaaacattggtgaattgagcagtttaagaaaggtggacatgaggggttgcgacgaagtgaaagagctgcctccatcagtttcggatcttcatcagttagaggaagtgatatgcaaccgtgaacgcaaaggcaggttatggaaaccctttcgacccaccctcacaaacctgagcgtggtggtgattcctcgaacccgaccaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

163

Amino Acids

18.6

Weight (kDa)

9.2

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005167)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15150 FvH4_6g50311
malus_domestica	MD02G1164500.v1.1 MD02G1165200.v1.1 MD02G1165700.v1.1 MD15G1263200.v1.1
prunus_persica	Prupe.7G139000_v2.0.a1
pyrus_communis	pycom02g13110 pycom02g13130 pycom15g23970 pycom15g24000
rosa_chinensis	RchiOBHm_Chr2g0104271 RchiOBHm_Chr2g0104291 RchiOBHm_Chr2g0104321 RchiOBHm_Chr2g0104341
rosa_laevigata	RLG00000016962 RLG00000017326
rosa_multiflora	Rmu_co8091214.1_g000001 Rmu_co8203698.1_g000001 Rmu_co8297485.1_g000001 Rmu_co8338119.1_g000001 Rmu_sc0000676.1_g000020 Rmu_sc0002316.1_g000098 Rmu_sc0002414.1_g000006 Rmu_sc0005137.1_g000003
rosa_samantha	Rh2BG177400 Rh2BG178100 Rh2DG176700 Rh2DG177000 Rh7AG022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	408
AciI	CCGC	2 cut(s)	77, 271
AclWI	GGATC	1 cut(s)	378
AcsI	RAATTY	3 cut(s)	19, 68, 160
AfaI	GTAC	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	460
AgsI	TTSAA	1 cut(s)	207
AluBI	AGCT	3 cut(s)	62, 211, 352
AluI	AGCT	3 cut(s)	62, 211, 352
AlwI	GGATC	1 cut(s)	378
ApeKI	GCWGC	2 cut(s)	84, 352
ApoI	RAATTY	3 cut(s)	19, 68, 160
AspLEI	GCGC	1 cut(s)	269
AsuHPI	GGTGA	2 cut(s)	308, 478
BbvI	GCAGC	2 cut(s)	71, 339
BccI	CCATC	2 cut(s)	230, 367
BceAI	ACGGC	1 cut(s)	108
BfuAI	ACCTGC	1 cut(s)	408
BisI	GCNGC	2 cut(s)	85, 353
BlsI	GCNGC	2 cut(s)	86, 354
BmcAI	AGTACT	1 cut(s)	180
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	1 cut(s)	254
BmuI	ACTGGG	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	455
BsaBI	GATNNNNATC	2 cut(s)	113, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	460
Bse1I	ACTGG	1 cut(s)	216
Bse3DI	GCAATG	1 cut(s)	273
Bse8I	GATNNNNATC	2 cut(s)	113, 375
BseGI	GGATG	2 cut(s)	13, 269
BseJI	GATNNNNATC	2 cut(s)	113, 375
BseLI	CCNNNNNNNGG	1 cut(s)	460
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	2 cut(s)	173, 446
BseNI	ACTGG	1 cut(s)	216
BseXI	GCAGC	2 cut(s)	71, 339
BslI	CCNNNNNNNGG	1 cut(s)	460
Bsp143I	GATC	1 cut(s)	370
BspACI	CCGC	2 cut(s)	77, 271
BspCNI	CTCAG	2 cut(s)	174, 447
BspMI	ACCTGC	1 cut(s)	408
BspPI	GGATC	1 cut(s)	378
BsrDI	GCAATG	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	216
BssMI	GATC	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	3 cut(s)	172, 182, 455
BstF5I	GGATG	2 cut(s)	13, 269
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	1 cut(s)	373
BstMBI	GATC	1 cut(s)	370
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	71, 339
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BtsCI	GGATG	2 cut(s)	13, 269
BveI	ACCTGC	1 cut(s)	408
Cac8I	GCNNGC	1 cut(s)	271
CfoI	GCGC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	179
CviAII	CATG	1 cut(s)	325
CviJI	RGCY	5 cut(s)	62, 123, 187, 211, 352
CviKI_1	RGCY	5 cut(s)	62, 123, 187, 211, 352
CviQI	GTAC	1 cut(s)	179
DdeI	CTNAG	3 cut(s)	172, 182, 455
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
DraI	TTTAAA	1 cut(s)	102
EcoT22I	ATGCAT	1 cut(s)	13
FaeI	CATG	1 cut(s)	328
FaiI	YATR	5 cut(s)	257, 259, 326, 397, 424
FalI	AAGNNNNNCTT	4 cut(s)	57, 89, 230, 262
FatI	CATG	1 cut(s)	324
FauI	CCCGC	1 cut(s)	278
FauNDI	CATATG	1 cut(s)	257
Fnu4HI	GCNGC	2 cut(s)	85, 353
FokI	GGATG	2 cut(s)	20, 276
Fsp4HI	GCNGC	2 cut(s)	85, 353
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	2 cut(s)	85, 353
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	1 cut(s)	328
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	2 cut(s)	94, 469
HphI	GGTGA	2 cut(s)	308, 478
Hpy166II	GTNNAC	3 cut(s)	169, 322, 407
Hpy188I	TCNGA	5 cut(s)	7, 18, 93, 158, 370
Hpy8I	GTNNAC	3 cut(s)	169, 322, 407
Hpy99I	CGWCG	1 cut(s)	341
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	3 cut(s)	11, 87, 399
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	3 cut(s)	172, 182, 455
HpySE526I	ACGT	1 cut(s)	136
Hsp92II	CATG	1 cut(s)	328
HspAI	GCGC	1 cut(s)	267
Kzo9I	GATC	1 cut(s)	370
LpnPI	CCDG	3 cut(s)	229, 403, 467
Lsp1109I	GCAGC	2 cut(s)	71, 339
LweI	GCATC	1 cut(s)	254
MaeII	ACGT	1 cut(s)	136
MaeIII	GTNAC	2 cut(s)	132, 137
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MboII	GAAGA	3 cut(s)	118, 161, 365
MflI	RGATCY	1 cut(s)	370
MluCI	AATT	6 cut(s)	19, 29, 68, 160, 299, 487
MnlI	CCTC	8 cut(s)	19, 177, 242, 321, 366, 379, 455, 483
Mph1103I	ATGCAT	1 cut(s)	13
MseI	TTAA	6 cut(s)	32, 51, 57, 101, 242, 311
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeI	CATATG	1 cut(s)	257
NdeII	GATC	1 cut(s)	370
NlaIII	CATG	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	137
NsiI	ATGCAT	1 cut(s)	13
PfeI	GAWTC	2 cut(s)	94, 469
PkrI	GCNGC	2 cut(s)	86, 354
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
SaqAI	TTAA	6 cut(s)	32, 51, 57, 101, 242, 311
SatI	GCNGC	2 cut(s)	85, 353
Sau3AI	GATC	1 cut(s)	370
ScaI	AGTACT	1 cut(s)	180
SetI	ASST	9 cut(s)	57, 64, 139, 213, 234, 321, 354, 422, 456
SfaNI	GCATC	1 cut(s)	254
Sse9I	AATT	6 cut(s)	19, 29, 68, 160, 299, 487
SsiI	CCGC	2 cut(s)	77, 271
TaaI	ACNGT	1 cut(s)	404
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	2 cut(s)	436, 475
TasI	AATT	6 cut(s)	19, 29, 68, 160, 299, 487
TatI	WGTACW	1 cut(s)	178
TfiI	GAWTC	2 cut(s)	94, 469
Tru1I	TTAA	6 cut(s)	32, 51, 57, 101, 242, 311
Tru9I	TTAA	6 cut(s)	32, 51, 57, 101, 242, 311
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	2 cut(s)	84, 352
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	2 cut(s)	86, 365
XapI	RAATTY	3 cut(s)	19, 68, 160
ZrmI	AGTACT	1 cut(s)	180
Zsp2I	ATGCAT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.