MD02G1165700.v1.1

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0005167
Physical Location & Seq
Forward (+)
14218548 .. 14219267
720 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1165700.v1.1.491

Sequence Viewer

Length: 312 bp
ATGAAGATGCACAATATCACCAACTGTCATAAGCTATCTGCCTTGCCTGAAGAGATCGGAAAGCTGGAGAATTTTGAAGTATTGAGACTAAGGTCTTGTACAGACTTGGTAAGGCTTCCGGTCTCTATTGAGAACCTCACTAAGTTGTGCTGTCTTGACAAGTATAATTTTTTCGGCATTAAGAAATTGACTGAAGGCATTGGTAATATGAGCGGTTTAAGAAAGATCAACATGGGACAACGCTCAAGATTGAAAGAATTTCCTCTGTCAGTGTGGGATCTTCACGAGCAGTTCGAGGAAGTGACTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

104

Amino Acids

11.95

Weight (kDa)

8.4

Isoelectric Point (pI)

68.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 11 - 80 2.4e-11 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 213
AciI CCGC 1 cut(s) 213
AclWI GGATC 1 cut(s) 285
AcsI RAATTY 2 cut(s) 70, 257
AcuI CTGAAG 2 cut(s) 69, 213
AfaI GTAC 1 cut(s) 100
AgsI TTSAA 2 cut(s) 77, 253
AluBI AGCT 2 cut(s) 34, 64
AluI AGCT 2 cut(s) 34, 64
Alw26I GTCTC 2 cut(s) 79, 127
AlwI GGATC 1 cut(s) 285
ApoI RAATTY 2 cut(s) 70, 257
AsuHPI GGTGA 1 cut(s) 10
BauI CACGAG 1 cut(s) 284
BcoDI GTCTC 2 cut(s) 79, 127
BoxI GACNNNNGTC 1 cut(s) 91
BpmI CTGGAG 1 cut(s) 86
BpuEI CTTGAG 1 cut(s) 229
BsaI GGTCTC 1 cut(s) 127
BsaWI WCCGGW 1 cut(s) 118
BsiSI CCGG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 249
BsmAI GTCTC 2 cut(s) 79, 127
BsmFI GGGAC 1 cut(s) 249
Bso31I GGTCTC 1 cut(s) 127
Bsp1407I TGTACA 1 cut(s) 98
Bsp143I GATC 3 cut(s) 54, 225, 277
BspACI CCGC 1 cut(s) 213
BspPI GGATC 1 cut(s) 285
BspTNI GGTCTC 1 cut(s) 127
BsrBI CCGCTC 1 cut(s) 213
BsrGI TGTACA 1 cut(s) 98
BssMI GATC 3 cut(s) 54, 225, 277
BssSI CACGAG 1 cut(s) 284
Bst2BI CACGAG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 45
BstAUI TGTACA 1 cut(s) 98
BstDEI CTNAG 2 cut(s) 89, 141
BstKTI GATC 3 cut(s) 57, 228, 280
BstMAI GTCTC 2 cut(s) 79, 127
BstMBI GATC 3 cut(s) 54, 225, 277
BstPAI GACNNNNGTC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BtsIMutI CAGTG 1 cut(s) 276
Csp6I GTAC 1 cut(s) 99
CviAII CATG 1 cut(s) 232
CviJI RGCY 3 cut(s) 34, 64, 115
CviKI_1 RGCY 3 cut(s) 34, 64, 115
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 2 cut(s) 89, 141
DpnI GATC 3 cut(s) 56, 227, 279
DpnII GATC 3 cut(s) 54, 225, 277
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 127
Eco57I CTGAAG 2 cut(s) 69, 213
FaeI CATG 1 cut(s) 235
FaiI YATR 4 cut(s) 30, 165, 209, 233
FaqI GGGAC 1 cut(s) 249
FatI CATG 1 cut(s) 231
GsuI CTGGAG 1 cut(s) 86
HapII CCGG 1 cut(s) 119
Hin1II CATG 1 cut(s) 235
HpaII CCGG 1 cut(s) 119
HphI GGTGA 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 59
Hpy188III TCNNGA 3 cut(s) 155, 246, 284
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 89, 141
Hsp92II CATG 1 cut(s) 235
Kzo9I GATC 3 cut(s) 54, 225, 277
LpnPI CCDG 3 cut(s) 50, 60, 132
MaeIII GTNAC 1 cut(s) 301
MalI GATC 3 cut(s) 56, 227, 279
MbiI CCGCTC 1 cut(s) 213
MboI GATC 3 cut(s) 54, 225, 277
MboII GAAGA 3 cut(s) 16, 62, 272
MflI RGATCY 1 cut(s) 277
MluCI AATT 4 cut(s) 70, 166, 185, 257
MnlI CCTC 3 cut(s) 146, 273, 289
MseI TTAA 2 cut(s) 180, 218
MspI CCGG 1 cut(s) 119
NdeII GATC 3 cut(s) 54, 225, 277
NlaIII CATG 1 cut(s) 235
NmuCI GTSAC 1 cut(s) 301
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PshAI GACNNNNGTC 1 cut(s) 91
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
SaqAI TTAA 2 cut(s) 180, 218
Sau3AI GATC 3 cut(s) 54, 225, 277
SetI ASST 4 cut(s) 36, 66, 95, 138
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 4 cut(s) 70, 166, 185, 257
SsiI CCGC 1 cut(s) 213
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 1 cut(s) 294
TasI AATT 4 cut(s) 70, 166, 185, 257
TatI WGTACW 1 cut(s) 98
Tru1I TTAA 2 cut(s) 180, 218
Tru9I TTAA 2 cut(s) 180, 218
TscAI CASTG 1 cut(s) 276
TseFI GTSAC 1 cut(s) 301
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 276
XapI RAATTY 2 cut(s) 70, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.