Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8203698.1

Orthogroup ID

OG0005167

Physical Location & Seq

Genomic Coordinates Forward (+)

94 .. 648

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8203698.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgtgtagaattggccaaggttttggtaatggttctatccatatatcagaggcgtttccaaatcttgttgaaatgaatattgattactgcaatgatttggtggagttgcctcctcaattgtgtgaccttgttcaattgaagaaactcagtgtcaccaattctcataaactctctgccttacctgaagacattggaaatctagtaaatttagagctgttgaggctcaggtgttgtacagacttgtcagagttacctggctcggttaggaacctcaagaagttaaacttgcttgacatatctgattgctttagcattaaggaattgcctgaagacattggagagttgtgcaatttagaaaggctcaacatgagacagtgcacgagattgaatgagttgccttcttcagttttggatcttgaacagttgaaggaagtgacatgtgatgaagagactgaaattttatgggaaccatttttaccctttctcaagaacatacacatgaaggttgtgaaagaagatatcaacctgaattggctccacaaggcacattgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

184

Amino Acids

21.01

Weight (kDa)

4.88

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005167)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15150 FvH4_6g50311
malus_domestica	MD02G1164500.v1.1 MD02G1165200.v1.1 MD02G1165700.v1.1 MD15G1263200.v1.1
prunus_persica	Prupe.7G139000_v2.0.a1
pyrus_communis	pycom02g13110 pycom02g13130 pycom15g23970 pycom15g24000
rosa_chinensis	RchiOBHm_Chr2g0104271 RchiOBHm_Chr2g0104291 RchiOBHm_Chr2g0104321 RchiOBHm_Chr2g0104341
rosa_laevigata	RLG00000016962 RLG00000017326
rosa_multiflora	Rmu_co8091214.1_g000001 Rmu_co8203698.1_g000001 Rmu_co8297485.1_g000001 Rmu_co8338119.1_g000001 Rmu_sc0000676.1_g000020 Rmu_sc0002316.1_g000098 Rmu_sc0002414.1_g000006 Rmu_sc0005137.1_g000003
rosa_samantha	Rh2BG177400 Rh2BG178100 Rh2DG176700 Rh2DG177000 Rh7AG022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	420
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	2 cut(s)	205, 456
AcuI	CTGAAG	3 cut(s)	204, 348, 387
AfaI	GTAC	1 cut(s)	235
AflIII	ACRYGT	1 cut(s)	437
AgsI	TTSAA	6 cut(s)	71, 134, 139, 388, 419, 427
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw21I	GWGCWC	1 cut(s)	380
Alw26I	GTCTC	2 cut(s)	364, 443
Alw44I	GTGCAC	1 cut(s)	376
AlwI	GGATC	1 cut(s)	420
AoxI	GGCC	1 cut(s)	13
ApaLI	GTGCAC	1 cut(s)	376
ApoI	RAATTY	2 cut(s)	205, 456
AsuHPI	GGTGA	1 cut(s)	145
BaeGI	GKGCMC	1 cut(s)	380
BalI	TGGCCA	1 cut(s)	15
BauI	CACGAG	1 cut(s)	379
BbsI	GAAGAC	2 cut(s)	192, 336
Bbv12I	GWGCWC	1 cut(s)	380
BciT130I	CCWGG	1 cut(s)	255
BcoDI	GTCTC	2 cut(s)	364, 443
BfaI	CTAG	1 cut(s)	200
Bme1390I	CCNGG	1 cut(s)	255
BmiI	GGNNCC	3 cut(s)	269, 468, 536
BmrFI	CCNGG	1 cut(s)	255
BpiI	GAAGAC	2 cut(s)	192, 336
Bpu10I	CCTNAGC	1 cut(s)	224
BpuEI	CTTGAG	2 cut(s)	257, 470
BsaJI	CCNNGG	1 cut(s)	16
Bse3DI	GCAATG	2 cut(s)	97, 547
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	16
BseMI	GCAATG	2 cut(s)	97, 547
BseMII	CTCAG	2 cut(s)	160, 238
BseRI	GAGGAG	1 cut(s)	102
BseSI	GKGCMC	1 cut(s)	380
BshFI	GGCC	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	380
BsmAI	GTCTC	2 cut(s)	364, 443
BsnI	GGCC	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp1407I	TGTACA	1 cut(s)	233
Bsp143I	GATC	1 cut(s)	412
BspANI	GGCC	1 cut(s)	15
BspCNI	CTCAG	2 cut(s)	159, 237
BspLI	GGNNCC	3 cut(s)	269, 468, 536
BspPI	GGATC	1 cut(s)	420
BsrDI	GCAATG	2 cut(s)	97, 547
BsrGI	TGTACA	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	1 cut(s)	412
BssSI	CACGAG	1 cut(s)	379
BssT1I	CCWWGG	1 cut(s)	16
Bst2BI	CACGAG	1 cut(s)	379
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	2 cut(s)	375, 423
Bst6I	CTCTTC	1 cut(s)	441
BstAUI	TGTACA	1 cut(s)	233
BstDEI	CTNAG	2 cut(s)	146, 224
BstKTI	GATC	1 cut(s)	415
BstMAI	GTCTC	2 cut(s)	364, 443
BstMBI	GATC	1 cut(s)	412
BstMWI	GCNNNNNNNGC	1 cut(s)	220
BstNI	CCWGG	1 cut(s)	255
BstNSI	RCATGY	1 cut(s)	441
BstSCI	CCNGG	1 cut(s)	253
BstSLI	GKGCMC	1 cut(s)	380
BstV2I	GAAGAC	2 cut(s)	192, 336
BstX2I	RGATCY	1 cut(s)	412
BstXI	CCANNNNNNTGG	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	412
BsuRI	GGCC	1 cut(s)	15
BtsIMutI	CAGTG	2 cut(s)	154, 380
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	3 cut(s)	367, 438, 499
CviJI	RGCY	6 cut(s)	15, 214, 223, 258, 361, 535
CviKI_1	RGCY	6 cut(s)	15, 214, 223, 258, 361, 535
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	2 cut(s)	146, 224
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
EaeI	YGGCCR	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	520
Eco57I	CTGAAG	3 cut(s)	204, 348, 387
EcoRII	CCWGG	1 cut(s)	253
EcoRV	GATATC	1 cut(s)	520
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	3 cut(s)	370, 441, 502
FaiI	YATR	9 cut(s)	42, 44, 165, 296, 368, 439, 463, 494, 500
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FatI	CATG	3 cut(s)	366, 437, 498
FspBI	CTAG	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	15
Hin1II	CATG	3 cut(s)	370, 441, 502
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	378
Hpy188I	TCNGA	3 cut(s)	49, 247, 301
Hpy188III	TCNNGA	3 cut(s)	274, 416, 487
Hpy8I	GTNNAC	1 cut(s)	378
HpyAV	CCTTC	3 cut(s)	408, 421, 496
HpyCH4III	ACNGT	2 cut(s)	375, 423
HpyCH4V	TGCA	3 cut(s)	90, 348, 378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
HpyF3I	CTNAG	2 cut(s)	146, 224
Hsp92II	CATG	3 cut(s)	370, 441, 502
Kzo9I	GATC	1 cut(s)	412
LmnI	GCTCC	1 cut(s)	540
LpnPI	CCDG	6 cut(s)	195, 211, 240, 267, 339, 539
MaeI	CTAG	1 cut(s)	200
MaeIII	GTNAC	4 cut(s)	122, 151, 249, 433
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MboII	GAAGA	6 cut(s)	151, 197, 341, 393, 458, 527
MfeI	CAATTG	2 cut(s)	116, 134
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	380
MlsI	TGGCCA	1 cut(s)	15
MluCI	AATT	9 cut(s)	9, 116, 134, 157, 205, 320, 349, 456, 529
MluNI	TGGCCA	1 cut(s)	15
MnlI	CCTC	5 cut(s)	43, 120, 123, 213, 281
Mox20I	TGGCCA	1 cut(s)	15
MscI	TGGCCA	1 cut(s)	15
MseI	TTAA	2 cut(s)	281, 315
MslI	CAYNNNNRTG	1 cut(s)	497
Msp20I	TGGCCA	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	255
MunI	CAATTG	2 cut(s)	116, 134
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	220
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	3 cut(s)	370, 441, 502
NlaIV	GGNNCC	3 cut(s)	269, 468, 536
NmuCI	GTSAC	3 cut(s)	122, 151, 433
NspI	RCATGY	1 cut(s)	441
PciI	ACATGT	1 cut(s)	437
PscI	ACATGT	1 cut(s)	437
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	3 cut(s)	269, 468, 536
PsrI	GAACNNNNNNTAC	2 cut(s)	459, 491
PsuI	RGATCY	1 cut(s)	412
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
RseI	CAYNNNNRTG	1 cut(s)	497
SaqAI	TTAA	2 cut(s)	281, 315
Sau3AI	GATC	1 cut(s)	412
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	380
SetI	ASST	9 cut(s)	22, 129, 184, 216, 230, 256, 273, 507, 528
SmiMI	CAYNNNNRTG	1 cut(s)	497
SmlI	CTYRAG	2 cut(s)	272, 485
SmoI	CTYRAG	2 cut(s)	272, 485
Sse9I	AATT	9 cut(s)	9, 116, 134, 157, 205, 320, 349, 456, 529
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	375, 423
TasI	AATT	9 cut(s)	9, 116, 134, 157, 205, 320, 349, 456, 529
TatI	WGTACW	1 cut(s)	233
Tru1I	TTAA	2 cut(s)	281, 315
Tru9I	TTAA	2 cut(s)	281, 315
TscAI	CASTG	2 cut(s)	154, 380
TseFI	GTSAC	3 cut(s)	122, 151, 433
Tsp45I	GTSAC	3 cut(s)	122, 151, 433
TspDTI	ATGAA	3 cut(s)	89, 459, 515
TspRI	CASTG	2 cut(s)	154, 380
VneI	GTGCAC	1 cut(s)	376
XapI	RAATTY	2 cut(s)	205, 456
XceI	RCATGY	1 cut(s)	441
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.