RchiOBHm_Chr2g0104271

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005167
Physical Location & Seq
Forward (+)
15665440 .. 15665814
375 bp
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UTR
Exon/CDS
Intron
PRQ47854

Sequence Viewer

Length: 375 bp
ATGTGTAGCATCAGTCAAGCTTTCAGCAACTCTTCCTTCCAAATTTCATTTGCATTTCCAAATGTAGAGGAATTGAACATTGACTATTGCAGTGACTTGGTGGAATTATGTGGTGATCTCAGTGATCTGATTGAGCTAAAGAATCTCAGTATCACCCACTGTCACAAGCTATCTGCCTTGCCTGAAGAGATAGGAAATTTGATCAAATTGGAAGTCTTGAGGCTAAAGTCATGTTCAGACTTGGTAACATTTCCAACCTCAATTAAGAACCTCGGAAAGTTGCAGTTTCTCGACATATCAGATTGCTTCAGCATCAAGGAGTTGCCTGAAGACATTGGTGAAATCAGCACTTTAAAAAAGATCAATATGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

124

Amino Acids

13.87

Weight (kDa)

4.7

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 18 - 122 2.6e-12 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 42, 196
AcuI CTGAAG 3 cut(s) 204, 292, 348
AgsI TTSAA 1 cut(s) 76
AluBI AGCT 3 cut(s) 20, 136, 169
AluI AGCT 3 cut(s) 20, 136, 169
ApoI RAATTY 2 cut(s) 42, 196
ArsI GACNNNNNNTTYG 2 cut(s) 198, 230
AsuHPI GGTGA 3 cut(s) 125, 145, 350
BbsI GAAGAC 1 cut(s) 336
BclI TGATCA 1 cut(s) 201
BmsI GCATC 2 cut(s) 18, 321
BpiI GAAGAC 1 cut(s) 336
BpuEI CTTGAG 1 cut(s) 238
BsaJI CCNNGG 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 271
BseMII CTCAG 2 cut(s) 133, 160
Bsp143I GATC 4 cut(s) 115, 124, 201, 360
BspCNI CTCAG 2 cut(s) 132, 159
BssECI CCNNGG 1 cut(s) 271
BssMI GATC 4 cut(s) 115, 124, 201, 360
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 2 cut(s) 37, 180
BstDEI CTNAG 2 cut(s) 119, 146
BstKTI GATC 4 cut(s) 118, 127, 204, 363
BstMBI GATC 4 cut(s) 115, 124, 201, 360
BstV2I GAAGAC 1 cut(s) 336
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 3 cut(s) 97, 127, 157
CviAII CATG 1 cut(s) 231
CviJI RGCY 4 cut(s) 20, 136, 169, 223
CviKI_1 RGCY 4 cut(s) 20, 136, 169, 223
DdeI CTNAG 2 cut(s) 119, 146
DpnI GATC 4 cut(s) 117, 126, 203, 362
DpnII GATC 4 cut(s) 115, 124, 201, 360
DraI TTTAAA 1 cut(s) 354
Eam1104I CTCTTC 2 cut(s) 37, 180
EarI CTCTTC 2 cut(s) 37, 180
Eco57I CTGAAG 3 cut(s) 204, 292, 348
FaeI CATG 1 cut(s) 234
FaiI YATR 4 cut(s) 109, 232, 296, 368
FatI CATG 1 cut(s) 230
FbaI TGATCA 1 cut(s) 201
Hin1II CATG 1 cut(s) 234
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 1 cut(s) 142
HphI GGTGA 3 cut(s) 125, 145, 350
Hpy188I TCNGA 4 cut(s) 129, 238, 275, 301
Hpy188III TCNNGA 2 cut(s) 217, 290
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4V TGCA 3 cut(s) 53, 90, 283
HpyF3I CTNAG 2 cut(s) 119, 146
Hsp92II CATG 1 cut(s) 234
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 4 cut(s) 115, 124, 201, 360
LpnPI CCDG 2 cut(s) 195, 339
LweI GCATC 2 cut(s) 18, 321
MaeIII GTNAC 3 cut(s) 92, 161, 244
MalI GATC 4 cut(s) 117, 126, 203, 362
MboI GATC 4 cut(s) 115, 124, 201, 360
MboII GAAGA 3 cut(s) 24, 197, 341
MluCI AATT 6 cut(s) 42, 71, 104, 196, 206, 261
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 4 cut(s) 61, 213, 268, 281
MseI TTAA 2 cut(s) 264, 353
NdeII GATC 4 cut(s) 115, 124, 201, 360
NlaIII CATG 1 cut(s) 234
NmuCI GTSAC 2 cut(s) 92, 161
PfeI GAWTC 1 cut(s) 142
SaqAI TTAA 2 cut(s) 264, 353
Sau3AI GATC 4 cut(s) 115, 124, 201, 360
SetI ASST 5 cut(s) 22, 138, 171, 260, 273
SfaNI GCATC 2 cut(s) 18, 321
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
Sse9I AATT 6 cut(s) 42, 71, 104, 196, 206, 261
TaaI ACNGT 1 cut(s) 161
TaqI TCGA 1 cut(s) 291
TasI AATT 6 cut(s) 42, 71, 104, 196, 206, 261
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 2 cut(s) 264, 353
Tru9I TTAA 2 cut(s) 264, 353
TscAI CASTG 3 cut(s) 97, 127, 164
TseFI GTSAC 2 cut(s) 92, 161
Tsp45I GTSAC 2 cut(s) 92, 161
TspDTI ATGAA 1 cut(s) 36
TspRI CASTG 3 cut(s) 97, 127, 164
XapI RAATTY 2 cut(s) 42, 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.