Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005167

Physical Location & Seq

Genomic Coordinates Reverse (-)

1475551 .. 1476273

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG022500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAAGAAACTGAAGACTCTAATACTCATAAGTTCAGGTATCGGTCCTGCTGAGTTGAATAACTTTCAACTAGTTGATTCGAAACCAAATCTAAAGAGAATCAGACTAGAACGAATTTCATTTCCTTCAATAAGCAGGTATCCTATACATCTGGAAAGTTTGAAAAAGATTTCTCTATTCATGTGTAGCGTTGGCCAAGGTTTTGGTAACGGTTCCATACATATATCAGAGGCGTTTCCAAAACTTGTTGAAATGAATATTGATTACTGCAATGATTTGGTGGAGTTGCCTGCCGATCTCTGTGACCTTATTCAACTGAGGAAACTCAGTGTCACCAATTCTCATAAGCTCTCTGTCTTACCTGAAGACATTGGAAATCTAGTAAATTTAGAGCTACTGAGGCTTAGGTGTTGTACAGACTTGTCAGAGTTACCCGACTCTATTAGGAACCTCAAGAACTTAAACTTGCTTGACATATCTGATTGCTTTAGCATTAAGGAATTGCCTGAAGACATTGGAGAACTGTGCAGTTTGGAAAGGTTCAACATGAGACATTGCTCGAGATTGAATGAGTTGCCTTCTTCAGTTGTGGATCTTAAACAGTTGAAGGAAGTGACATGTGATGAAGAGACAGAAATCTTATGGGAGCCCTTCTTACCGTATCTCAGGAACATACACATAAAGGTTGTGAAAGAAGATATCAACCTGAATTGGCTCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

240

Amino Acids

27.48

Weight (kDa)

5.59

Isoelectric Point (pI)

46.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	80 - 161	5.1e-10	Leucine-rich repeat region
LRR_14	PF23598	164 - 213	8.2e-08	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005167)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15150 FvH4_6g50311
malus_domestica	MD02G1164500.v1.1 MD02G1165200.v1.1 MD02G1165700.v1.1 MD15G1263200.v1.1
prunus_persica	Prupe.7G139000_v2.0.a1
pyrus_communis	pycom02g13110 pycom02g13130 pycom15g23970 pycom15g24000
rosa_chinensis	RchiOBHm_Chr2g0104271 RchiOBHm_Chr2g0104291 RchiOBHm_Chr2g0104321 RchiOBHm_Chr2g0104341
rosa_laevigata	RLG00000016962 RLG00000017326
rosa_multiflora	Rmu_co8091214.1_g000001 Rmu_co8203698.1_g000001 Rmu_co8297485.1_g000001 Rmu_co8338119.1_g000001 Rmu_sc0000676.1_g000020 Rmu_sc0002316.1_g000098 Rmu_sc0002414.1_g000006 Rmu_sc0005137.1_g000003
rosa_samantha	Rh2BG177400 Rh2BG178100 Rh2DG176700 Rh2DG177000 Rh7AG022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	126
AclWI	GGATC	1 cut(s)	600
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	2 cut(s)	114, 385
AcuI	CTGAAG	4 cut(s)	32, 384, 528, 567
AfaI	GTAC	1 cut(s)	415
AflIII	ACRYGT	1 cut(s)	617
AgsI	TTSAA	9 cut(s)	58, 68, 129, 163, 251, 314, 544, 568, 607
AhlI	ACTAGT	1 cut(s)	70
AluBI	AGCT	2 cut(s)	349, 394
AluI	AGCT	2 cut(s)	349, 394
Alw26I	GTCTC	2 cut(s)	544, 623
AlwI	GGATC	1 cut(s)	600
Ama87I	CYCGRG	1 cut(s)	559
AoxI	GGCC	1 cut(s)	193
ApoI	RAATTY	2 cut(s)	114, 385
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	325
AsuII	TTCGAA	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	559
AvaII	GGWCC	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	195
BanII	GRGCYC	1 cut(s)	651
BbsI	GAAGAC	3 cut(s)	20, 372, 516
BciVI	GTATCC	1 cut(s)	150
BcoDI	GTCTC	2 cut(s)	544, 623
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	4 cut(s)	71, 107, 380, 721
BfuAI	ACCTGC	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	44
BmeT110I	CYCGRG	1 cut(s)	559
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	4 cut(s)	214, 449, 648, 716
BpiI	GAAGAC	3 cut(s)	20, 372, 516
Bpu10I	CCTNAGC	1 cut(s)	404
Bpu14I	TTCGAA	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	196
Bse3DI	GCAATG	2 cut(s)	277, 553
BseDI	CCNNGG	1 cut(s)	196
BseMI	GCAATG	2 cut(s)	277, 553
BseMII	CTCAG	5 cut(s)	42, 308, 340, 389, 679
BsgI	GTGCAG	1 cut(s)	547
BshFI	GGCC	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	559
BsmAI	GTCTC	2 cut(s)	544, 623
BsnI	GGCC	1 cut(s)	195
BsoBI	CYCGRG	1 cut(s)	559
Bsp119I	TTCGAA	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	651
Bsp1407I	TGTACA	1 cut(s)	413
Bsp143I	GATC	2 cut(s)	295, 592
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	5 cut(s)	43, 309, 339, 390, 678
BspLI	GGNNCC	4 cut(s)	214, 449, 648, 716
BspMI	ACCTGC	1 cut(s)	126
BspPI	GGATC	1 cut(s)	600
BspT104I	TTCGAA	1 cut(s)	80
BsrDI	GCAATG	2 cut(s)	277, 553
BsrGI	TGTACA	1 cut(s)	413
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	2 cut(s)	295, 592
BssT1I	CCWWGG	1 cut(s)	196
Bst4CI	ACNGT	4 cut(s)	212, 525, 603, 660
Bst6I	CTCTTC	1 cut(s)	621
BstAUI	TGTACA	1 cut(s)	413
BstBI	TTCGAA	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	6 cut(s)	51, 317, 326, 398, 404, 665
BstKTI	GATC	2 cut(s)	298, 595
BstMAI	GTCTC	2 cut(s)	544, 623
BstMBI	GATC	2 cut(s)	295, 592
BstMWI	GCNNNNNNNGC	1 cut(s)	400
BstNSI	RCATGY	1 cut(s)	621
BstV2I	GAAGAC	3 cut(s)	20, 372, 516
BstX2I	RGATCY	1 cut(s)	592
BstXI	CCANNNNNNTGG	1 cut(s)	203
BstYI	RGATCY	1 cut(s)	592
BsuI	GTATCC	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	334
BveI	ACCTGC	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	3 cut(s)	181, 547, 618
CviJI	RGCY	6 cut(s)	195, 349, 394, 403, 649, 715
CviKI_1	RGCY	6 cut(s)	195, 349, 394, 403, 649, 715
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	6 cut(s)	51, 317, 326, 398, 404, 665
DpnI	GATC	2 cut(s)	297, 594
DpnII	GATC	2 cut(s)	295, 592
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
Eco130I	CCWWGG	1 cut(s)	196
Eco24I	GRGCYC	1 cut(s)	651
Eco32I	GATATC	1 cut(s)	700
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	4 cut(s)	32, 384, 528, 567
Eco88I	CYCGRG	1 cut(s)	559
EcoRV	GATATC	1 cut(s)	700
EcoT14I	CCWWGG	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	651
ErhI	CCWWGG	1 cut(s)	196
FaeI	CATG	3 cut(s)	184, 550, 621
FatI	CATG	3 cut(s)	180, 546, 617
FriOI	GRGCYC	1 cut(s)	651
FspBI	CTAG	4 cut(s)	71, 107, 380, 721
HaeIII	GGCC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	184, 550, 621
HinfI	GANTC	4 cut(s)	16, 77, 99, 437
HphI	GGTGA	1 cut(s)	325
Hpy188I	TCNGA	4 cut(s)	104, 229, 427, 481
Hpy188III	TCNNGA	4 cut(s)	152, 454, 561, 667
HpyAV	CCTTC	4 cut(s)	135, 588, 601, 661
HpyCH4III	ACNGT	4 cut(s)	212, 525, 603, 660
HpyCH4V	TGCA	2 cut(s)	270, 528
HpyF10VI	GCNNNNNNNGC	1 cut(s)	400
HpyF3I	CTNAG	6 cut(s)	51, 317, 326, 398, 404, 665
Hsp92II	CATG	3 cut(s)	184, 550, 621
Kzo9I	GATC	2 cut(s)	295, 592
LmnI	GCTCC	2 cut(s)	646, 720
LpnPI	CCDG	9 cut(s)	21, 60, 121, 137, 303, 375, 519, 652, 719
MaeI	CTAG	4 cut(s)	71, 107, 380, 721
MaeIII	GTNAC	5 cut(s)	206, 302, 331, 429, 613
MalI	GATC	2 cut(s)	297, 594
MboI	GATC	2 cut(s)	295, 592
MboII	GAAGA	7 cut(s)	16, 25, 377, 521, 573, 638, 707
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	1 cut(s)	651
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	5 cut(s)	114, 337, 385, 500, 709
MluNI	TGGCCA	1 cut(s)	195
MlyI	GAGTC	2 cut(s)	10, 431
MnlI	CCTC	4 cut(s)	223, 312, 393, 461
Mox20I	TGGCCA	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	3 cut(s)	461, 495, 597
Msp20I	TGGCCA	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	400
NdeII	GATC	2 cut(s)	295, 592
NlaIII	CATG	3 cut(s)	184, 550, 621
NlaIV	GGNNCC	4 cut(s)	214, 449, 648, 716
NmuCI	GTSAC	3 cut(s)	302, 331, 613
NspI	RCATGY	1 cut(s)	621
NspV	TTCGAA	1 cut(s)	80
PaeR7I	CTCGAG	1 cut(s)	559
PciI	ACATGT	1 cut(s)	617
PfeI	GAWTC	2 cut(s)	77, 99
PleI	GAGTC	2 cut(s)	10, 431
PpsI	GAGTC	2 cut(s)	10, 431
PscI	ACATGT	1 cut(s)	617
PspN4I	GGNNCC	4 cut(s)	214, 449, 648, 716
PspPI	GGNCC	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	592
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
SaqAI	TTAA	3 cut(s)	461, 495, 597
Sau3AI	GATC	2 cut(s)	295, 592
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	2 cut(s)	10, 431
SduI	GDGCHC	1 cut(s)	651
Sfr274I	CTCGAG	1 cut(s)	559
SfuI	TTCGAA	1 cut(s)	80
SinI	GGWCC	1 cut(s)	44
SlaI	CTCGAG	1 cut(s)	559
SmlI	CTYRAG	2 cut(s)	452, 559
SmoI	CTYRAG	2 cut(s)	452, 559
SpeI	ACTAGT	1 cut(s)	70
Sse9I	AATT	5 cut(s)	114, 337, 385, 500, 709
SspI	AATATT	1 cut(s)	259
SspMI	CTAG	4 cut(s)	71, 107, 380, 721
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	4 cut(s)	212, 525, 603, 660
TaqI	TCGA	2 cut(s)	80, 560
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	5 cut(s)	114, 337, 385, 500, 709
TatI	WGTACW	1 cut(s)	413
TfiI	GAWTC	2 cut(s)	77, 99
Tru1I	TTAA	3 cut(s)	461, 495, 597
Tru9I	TTAA	3 cut(s)	461, 495, 597
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	3 cut(s)	302, 331, 613
Tsp45I	GTSAC	3 cut(s)	302, 331, 613
TspDTI	ATGAA	5 cut(s)	17, 108, 169, 269, 639
TspRI	CASTG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	2 cut(s)	114, 385
XceI	RCATGY	1 cut(s)	621
XhoI	CTCGAG	1 cut(s)	559
XspI	CTAG	4 cut(s)	71, 107, 380, 721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.