Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005167

Physical Location & Seq

Genomic Coordinates Forward (+)

15684436 .. 15684924

Gene Structure 489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47856

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGTCTCCAGAAGATTTCTTTATTCATGGTGTAATATTGGTCAAGCTTTCAGCAATGGGTCAATCCAATTTTCACATGCATGGCCAAATCTAGTGGAAGTGAACATTGACTATTGCAATGATTTGGTGGCATTGCCTGCTGACACCAGTGATTTGATTCATCTAAAGAAGCTCAGCATCACCAACTGTCATAAACTACTTGCCTTGCCTGAAGATATTGGAAAGCTGGCCAAATTAGAATTGTTGAGGCTAAGGTCTTGTACAGGCTTAGCAAAGTTGCCGGGTTCGACTGGGAACCTCAAGATGCTAAAATCTCTTGATATATCTTACTGCTTCAGCATTAAGGAGTTGCCTGAAGACTTTGGTGAATTGATCAGCTTAAGAGAGCTTAACATGAGAGACTGCTCAAGATTGCAAGAGCTGCCTCTATCAGTTTCAAATCTGGAGCATTTCGAAGTGATATGTGATGATGAGACACAAAGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

162

Amino Acids

18.26

Weight (kDa)

5.34

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	49 - 109	8e-08	Leucine-rich repeat region
LRR_14	PF23598	98 - 157	1e-05	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005167)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15150 FvH4_6g50311
malus_domestica	MD02G1164500.v1.1 MD02G1165200.v1.1 MD02G1165700.v1.1 MD15G1263200.v1.1
prunus_persica	Prupe.7G139000_v2.0.a1
pyrus_communis	pycom02g13110 pycom02g13130 pycom15g23970 pycom15g24000
rosa_chinensis	RchiOBHm_Chr2g0104271 RchiOBHm_Chr2g0104291 RchiOBHm_Chr2g0104321 RchiOBHm_Chr2g0104341
rosa_laevigata	RLG00000016962 RLG00000017326
rosa_multiflora	Rmu_co8091214.1_g000001 Rmu_co8203698.1_g000001 Rmu_co8297485.1_g000001 Rmu_co8338119.1_g000001 Rmu_sc0000676.1_g000020 Rmu_sc0002316.1_g000098 Rmu_sc0002414.1_g000006 Rmu_sc0005137.1_g000003
rosa_samantha	Rh2BG177400 Rh2BG178100 Rh2DG176700 Rh2DG177000 Rh7AG022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	83, 228
AcuI	CTGAAG	3 cut(s)	231, 319, 375
AfaI	GTAC	1 cut(s)	262
AflII	CTTAAG	1 cut(s)	379
AgsI	TTSAA	1 cut(s)	438
AluBI	AGCT	7 cut(s)	47, 172, 226, 378, 388, 421, 483
AluI	AGCT	7 cut(s)	47, 172, 226, 378, 388, 421, 483
Alw26I	GTCTC	3 cut(s)	10, 393, 467
AoxI	GGCC	2 cut(s)	83, 228
ApeKI	GCWGC	1 cut(s)	421
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	2 cut(s)	172, 377
AsuII	TTCGAA	1 cut(s)	453
BalI	TGGCCA	2 cut(s)	85, 230
BbsI	GAAGAC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	408
BclI	TGATCA	1 cut(s)	372
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	3 cut(s)	10, 393, 467
BfaI	CTAG	1 cut(s)	92
BfrI	CTTAAG	1 cut(s)	379
BisI	GCNGC	1 cut(s)	422
BlpI	GCTNAGC	2 cut(s)	173, 268
BlsI	GCNGC	1 cut(s)	423
Bme1390I	CCNGG	1 cut(s)	282
BmiI	GGNNCC	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	282
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	2 cut(s)	186, 294
BmuI	ACTGGG	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	363
BpmI	CTGGAG	1 cut(s)	464
Bpu10I	CCTNAGC	1 cut(s)	251
Bpu1102I	GCTNAGC	2 cut(s)	173, 268
Bpu14I	TTCGAA	1 cut(s)	453
BpuEI	CTTGAG	2 cut(s)	284, 391
BpuMI	CCSGG	1 cut(s)	282
BsaI	GGTCTC	1 cut(s)	10
Bse1I	ACTGG	2 cut(s)	147, 295
Bse3DI	GCAATG	3 cut(s)	61, 124, 131
BseMI	GCAATG	3 cut(s)	61, 124, 131
BseMII	CTCAG	1 cut(s)	187
BseNI	ACTGG	2 cut(s)	147, 295
BseXI	GCAGC	1 cut(s)	408
BshFI	GGCC	2 cut(s)	85, 230
BsiSI	CCGG	1 cut(s)	281
BsmAI	GTCTC	3 cut(s)	10, 393, 467
BsnI	GGCC	2 cut(s)	85, 230
Bso31I	GGTCTC	1 cut(s)	10
Bsp119I	TTCGAA	1 cut(s)	453
Bsp1407I	TGTACA	1 cut(s)	260
Bsp143I	GATC	1 cut(s)	372
Bsp1720I	GCTNAGC	2 cut(s)	173, 268
BspANI	GGCC	2 cut(s)	85, 230
BspCNI	CTCAG	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	296
BspT104I	TTCGAA	1 cut(s)	453
BspTI	CTTAAG	1 cut(s)	379
BspTNI	GGTCTC	1 cut(s)	10
BsrDI	GCAATG	3 cut(s)	61, 124, 131
BsrGI	TGTACA	1 cut(s)	260
BsrI	ACTGG	2 cut(s)	147, 295
BssMI	GATC	1 cut(s)	372
Bst4CI	ACNGT	1 cut(s)	188
BstAFI	CTTAAG	1 cut(s)	379
BstAPI	GCANNNNNTGC	2 cut(s)	137, 421
BstAUI	TGTACA	1 cut(s)	260
BstBI	TTCGAA	1 cut(s)	453
BstC8I	GCNNGC	2 cut(s)	138, 228
BstDEI	CTNAG	3 cut(s)	173, 251, 268
BstKTI	GATC	1 cut(s)	375
BstMAI	GTCTC	3 cut(s)	10, 393, 467
BstMBI	GATC	1 cut(s)	372
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 421
BstNSI	RCATGY	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	408
BstV2I	GAAGAC	1 cut(s)	363
BsuRI	GGCC	2 cut(s)	85, 230
BtsIMutI	CAGTG	1 cut(s)	154
Cac8I	GCNNGC	2 cut(s)	138, 228
Csp6I	GTAC	1 cut(s)	261
CspCI	CAANNNNNGTGG	2 cut(s)	75, 110
CviAII	CATG	4 cut(s)	27, 77, 81, 394
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	3 cut(s)	173, 251, 268
DpnI	GATC	1 cut(s)	374
DpnII	GATC	1 cut(s)	372
EaeI	YGGCCR	2 cut(s)	83, 228
Eco31I	GGTCTC	1 cut(s)	10
Eco57I	CTGAAG	3 cut(s)	231, 319, 375
EcoT22I	ATGCAT	1 cut(s)	82
FaeI	CATG	4 cut(s)	30, 80, 84, 397
FaiI	YATR	8 cut(s)	28, 78, 82, 192, 323, 395, 463, 487
FatI	CATG	4 cut(s)	26, 76, 80, 393
FbaI	TGATCA	1 cut(s)	372
Fnu4HI	GCNGC	1 cut(s)	422
Fsp4HI	GCNGC	1 cut(s)	422
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	1 cut(s)	422
GsuI	CTGGAG	1 cut(s)	464
HaeIII	GGCC	2 cut(s)	85, 230
HapII	CCGG	1 cut(s)	281
Hin1II	CATG	4 cut(s)	30, 80, 84, 397
HindIII	AAGCTT	2 cut(s)	45, 481
HinfI	GANTC	1 cut(s)	157
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	2 cut(s)	172, 377
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188III	TCNNGA	5 cut(s)	9, 301, 317, 408, 443
Hpy8I	GTNNAC	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4V	TGCA	3 cut(s)	80, 117, 415
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 421
HpyF3I	CTNAG	3 cut(s)	173, 251, 268
Hsp92II	CATG	4 cut(s)	30, 80, 84, 397
Ksp22I	TGATCA	1 cut(s)	372
Kzo9I	GATC	1 cut(s)	372
LmnI	GCTCC	1 cut(s)	445
Lsp1109I	GCAGC	1 cut(s)	408
LweI	GCATC	2 cut(s)	186, 294
MaeI	CTAG	1 cut(s)	92
MalI	GATC	1 cut(s)	374
MboI	GATC	1 cut(s)	372
MboII	GAAGA	3 cut(s)	24, 224, 368
MlsI	TGGCCA	2 cut(s)	85, 230
MluCI	AATT	4 cut(s)	68, 233, 239, 368
MluNI	TGGCCA	2 cut(s)	85, 230
MnlI	CCTC	3 cut(s)	240, 308, 435
Mox20I	TGGCCA	2 cut(s)	85, 230
Mph1103I	ATGCAT	1 cut(s)	82
MscI	TGGCCA	2 cut(s)	85, 230
MseI	TTAA	3 cut(s)	342, 380, 390
MslI	CAYNNNNRTG	1 cut(s)	79
Msp20I	TGGCCA	2 cut(s)	85, 230
MspCI	CTTAAG	1 cut(s)	379
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	2 cut(s)	137, 421
NciI	CCSGG	1 cut(s)	282
NdeII	GATC	1 cut(s)	372
NlaIII	CATG	4 cut(s)	30, 80, 84, 397
NlaIV	GGNNCC	1 cut(s)	296
NsiI	ATGCAT	1 cut(s)	82
NspI	RCATGY	1 cut(s)	80
NspV	TTCGAA	1 cut(s)	453
PfeI	GAWTC	1 cut(s)	157
PkrI	GCNGC	1 cut(s)	423
PspN4I	GGNNCC	1 cut(s)	296
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
RseI	CAYNNNNRTG	1 cut(s)	79
SaqAI	TTAA	3 cut(s)	342, 380, 390
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	1 cut(s)	372
ScrFI	CCNGG	1 cut(s)	282
SetI	ASST	9 cut(s)	49, 174, 228, 257, 300, 380, 390, 423, 485
SfaNI	GCATC	2 cut(s)	186, 294
SfuI	TTCGAA	1 cut(s)	453
SmiMI	CAYNNNNRTG	1 cut(s)	79
SmlI	CTYRAG	3 cut(s)	299, 379, 406
SmoI	CTYRAG	3 cut(s)	299, 379, 406
Sse9I	AATT	4 cut(s)	68, 233, 239, 368
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	280
TaaI	ACNGT	1 cut(s)	188
TaqI	TCGA	2 cut(s)	287, 453
TasI	AATT	4 cut(s)	68, 233, 239, 368
TatI	WGTACW	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	3 cut(s)	342, 380, 390
Tru9I	TTAA	3 cut(s)	342, 380, 390
TscAI	CASTG	1 cut(s)	154
TseI	GCWGC	1 cut(s)	421
TspDTI	ATGAA	2 cut(s)	15, 149
TspRI	CASTG	1 cut(s)	154
Vha464I	CTTAAG	1 cut(s)	379
XceI	RCATGY	1 cut(s)	80
XspI	CTAG	1 cut(s)	92
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.