Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8091214.1

Orthogroup ID

OG0005167

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 448

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8091214.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgtgtaccattgggaaagcttttagtgacggttccatccagatttcgtacgcatttccaagtctagaggaaattagcattgactattgcaatgacttggtggaaatgcctgccgacgtctgtgatcttagtcatctacggaagctcagtatcaccaactcacataagcttcttgccttgcctgaagaaattggaaaactggaaaagttggaactgctgagactaaggtcatgtacagacttggcacagttgccaggctcgagcaggaacctaaagaagttgatctttcttgacatttcttattgctttagcatcaaggtgttacctggagatattggtgaaatgagcagcttaagaaagctcaacatgagagaatgctcaagattgcaagaagtgcctgtgtcggttttggatcttgagcatttggaggaagtgatatgtgatgat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

149

Amino Acids

16.73

Weight (kDa)

4.88

Isoelectric Point (pI)

60.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005167)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15150 FvH4_6g50311
malus_domestica	MD02G1164500.v1.1 MD02G1165200.v1.1 MD02G1165700.v1.1 MD15G1263200.v1.1
prunus_persica	Prupe.7G139000_v2.0.a1
pyrus_communis	pycom02g13110 pycom02g13130 pycom15g23970 pycom15g24000
rosa_chinensis	RchiOBHm_Chr2g0104271 RchiOBHm_Chr2g0104291 RchiOBHm_Chr2g0104321 RchiOBHm_Chr2g0104341
rosa_laevigata	RLG00000016962 RLG00000017326
rosa_multiflora	Rmu_co8091214.1_g000001 Rmu_co8203698.1_g000001 Rmu_co8297485.1_g000001 Rmu_co8338119.1_g000001 Rmu_sc0000676.1_g000020 Rmu_sc0002316.1_g000098 Rmu_sc0002414.1_g000006 Rmu_sc0005137.1_g000003
rosa_samantha	Rh2BG177400 Rh2BG178100 Rh2DG176700 Rh2DG177000 Rh7AG022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
AclWI	GGATC	1 cut(s)	420
AcuI	CTGAAG	1 cut(s)	204
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	3 cut(s)	7, 50, 235
AflII	CTTAAG	1 cut(s)	352
AjnI	CCWGG	2 cut(s)	253, 325
AluBI	AGCT	5 cut(s)	20, 145, 169, 351, 361
AluI	AGCT	5 cut(s)	20, 145, 169, 351, 361
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	1 cut(s)	420
Ama87I	CYCGRG	1 cut(s)	259
ApeKI	GCWGC	1 cut(s)	348
AsuHPI	GGTGA	2 cut(s)	145, 350
AvaI	CYCGRG	1 cut(s)	259
BbvI	GCAGC	1 cut(s)	360
BccI	CCATC	1 cut(s)	44
BciT130I	CCWGG	2 cut(s)	255, 327
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	1 cut(s)	65
BfrI	CTTAAG	1 cut(s)	352
BisI	GCNGC	1 cut(s)	349
BlsI	GCNGC	1 cut(s)	350
Bme1390I	CCNGG	2 cut(s)	255, 327
BmeT110I	CYCGRG	1 cut(s)	259
BmiI	GGNNCC	2 cut(s)	34, 269
BmrFI	CCNGG	2 cut(s)	255, 327
BmsI	GCATC	1 cut(s)	321
BoxI	GACNNNNGTC	1 cut(s)	226
BpmI	CTGGAG	1 cut(s)	348
BpuEI	CTTGAG	2 cut(s)	364, 437
BsaHI	GRCGYC	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	97
BseBI	CCWGG	2 cut(s)	255, 327
BseGI	GGATG	1 cut(s)	36
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	2 cut(s)	160, 209
BseNI	ACTGG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	360
BsiHKCI	CYCGRG	1 cut(s)	259
BsiWI	CGTACG	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	214
BsmI	GAATGC	1 cut(s)	380
BsoBI	CYCGRG	1 cut(s)	259
Bsp1407I	TGTACA	1 cut(s)	233
Bsp143I	GATC	3 cut(s)	124, 282, 412
BspCNI	CTCAG	2 cut(s)	159, 210
BspLI	GGNNCC	2 cut(s)	34, 269
BspPI	GGATC	1 cut(s)	420
BspTI	CTTAAG	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	97
BsrGI	TGTACA	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	204
BssMI	GATC	3 cut(s)	124, 282, 412
BssNI	GRCGYC	1 cut(s)	117
Bst2UI	CCWGG	2 cut(s)	255, 327
Bst4CI	ACNGT	2 cut(s)	32, 249
BstACI	GRCGYC	1 cut(s)	117
BstAFI	CTTAAG	1 cut(s)	352
BstAPI	GCANNNNNTGC	1 cut(s)	394
BstAUI	TGTACA	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	4 cut(s)	128, 146, 218, 224
BstF5I	GGATG	1 cut(s)	36
BstKTI	GATC	3 cut(s)	127, 285, 415
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	3 cut(s)	124, 282, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	394
BstNI	CCWGG	2 cut(s)	255, 327
BstPAI	GACNNNNGTC	1 cut(s)	226
BstSCI	CCNGG	2 cut(s)	253, 325
BstV1I	GCAGC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	111
Csp6I	GTAC	3 cut(s)	6, 49, 234
CviAII	CATG	2 cut(s)	231, 367
CviJI	RGCY	6 cut(s)	20, 145, 169, 258, 351, 361
CviKI_1	RGCY	6 cut(s)	20, 145, 169, 258, 351, 361
CviQI	GTAC	3 cut(s)	6, 49, 234
DdeI	CTNAG	4 cut(s)	128, 146, 218, 224
DpnI	GATC	3 cut(s)	126, 284, 414
DpnII	GATC	3 cut(s)	124, 282, 412
Eco57I	CTGAAG	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	259
EcoRII	CCWGG	2 cut(s)	253, 325
FaeI	CATG	2 cut(s)	234, 370
FaiI	YATR	4 cut(s)	165, 232, 368, 439
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FatI	CATG	2 cut(s)	230, 366
Fnu4HI	GCNGC	1 cut(s)	349
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	1 cut(s)	349
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	1 cut(s)	349
GsuI	CTGGAG	1 cut(s)	348
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	234, 370
HindIII	AAGCTT	2 cut(s)	18, 167
HphI	GGTGA	2 cut(s)	145, 350
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	5 cut(s)	40, 65, 290, 381, 416
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	119
HpyCH4III	ACNGT	2 cut(s)	32, 249
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	2 cut(s)	90, 388
HpyF10VI	GCNNNNNNNGC	1 cut(s)	394
HpyF3I	CTNAG	4 cut(s)	128, 146, 218, 224
HpySE526I	ACGT	1 cut(s)	117
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	234, 370
Kzo9I	GATC	3 cut(s)	124, 282, 412
Lsp1109I	GCAGC	1 cut(s)	360
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	2 cut(s)	26, 321
MalI	GATC	3 cut(s)	126, 284, 414
MboI	GATC	3 cut(s)	124, 282, 412
MboII	GAAGA	1 cut(s)	197
MflI	RGATCY	1 cut(s)	412
MluCI	AATT	2 cut(s)	72, 189
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	2 cut(s)	61, 421
MseI	TTAA	1 cut(s)	353
MslI	CAYNNNNRTG	1 cut(s)	317
MspCI	CTTAAG	1 cut(s)	352
MspR9I	CCNGG	2 cut(s)	255, 327
Mva1269I	GAATGC	1 cut(s)	380
MvaI	CCWGG	2 cut(s)	255, 327
MwoI	GCNNNNNNNGC	1 cut(s)	394
NdeII	GATC	3 cut(s)	124, 282, 412
NlaIII	CATG	2 cut(s)	234, 370
NlaIV	GGNNCC	2 cut(s)	34, 269
NmuCI	GTSAC	1 cut(s)	26
PaeR7I	CTCGAG	1 cut(s)	259
PctI	GAATGC	1 cut(s)	380
Pfl23II	CGTACG	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	350
PshAI	GACNNNNGTC	1 cut(s)	226
Psp6I	CCWGG	2 cut(s)	253, 325
PspGI	CCWGG	2 cut(s)	253, 325
PspLI	CGTACG	1 cut(s)	48
PspN4I	GGNNCC	2 cut(s)	34, 269
PspXI	VCTCGAGB	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	412
RsaI	GTAC	3 cut(s)	7, 50, 235
RsaNI	GTAC	3 cut(s)	6, 49, 234
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	1 cut(s)	349
Sau3AI	GATC	3 cut(s)	124, 282, 412
ScrFI	CCNGG	2 cut(s)	255, 327
SfaNI	GCATC	1 cut(s)	321
Sfr274I	CTCGAG	1 cut(s)	259
SlaI	CTCGAG	1 cut(s)	259
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	4 cut(s)	259, 352, 379, 416
SmoI	CTYRAG	4 cut(s)	259, 352, 379, 416
Sse9I	AATT	2 cut(s)	72, 189
SspMI	CTAG	1 cut(s)	65
StyD4I	CCNGG	2 cut(s)	253, 325
TaaI	ACNGT	2 cut(s)	32, 249
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	1 cut(s)	260
TasI	AATT	2 cut(s)	72, 189
TatI	WGTACW	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TseFI	GTSAC	1 cut(s)	26
TseI	GCWGC	1 cut(s)	348
Tsp45I	GTSAC	1 cut(s)	26
TspGWI	ACGGA	1 cut(s)	154
Vha464I	CTTAAG	1 cut(s)	352
XbaI	TCTAGA	1 cut(s)	64
XhoI	CTCGAG	1 cut(s)	259
XspI	CTAG	1 cut(s)	65
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.