Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005167

Physical Location & Seq

Genomic Coordinates Forward (+)

18112058 .. 18113389

Gene Structure 1332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g23970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGTATGCTTACGAAATCTTGAGTTTGGAACTTTGGATTGTTACCAGGAAGGAGAATATAGAGATTGTGGATGACTACTACATCGAACACTTTGTTAGCCAGCATGATATGCTTAGGCAGCTGGCTATCTACAACGCGAAACTAGACCCAATAGAAGATAGAAAAAGACTGATTGTCGTTACTGGACACAATCAACCCAAGTGTTTGACGGAACAGAAGTCTCAACCCATCAATGCTCGCCTCTTATCTATCTCCTCTGATGGAATGTTCTCAGGAGAATGGCAGAGCGTTCATGTACCACAAGTTGAGGTTCTAGTTTTGAATTTTAAGACAGAGAACAATGCCTTGCCTGAATTTATGGAGAAAATTGGTAAATTGAAGGTTTTAATAGTCACAAACTATGGTTTCTTACCTACTGGTTTGAGTAATTTTGATCTTCTGGGTTCATTATCAAATCTAAAGAGAATCAGGTTAGAGCGCATATCAATTCCTTCCATGACCAAGAACTTCGTACCATTGAAGAGTCTGAAGAAGTTATCTTTATTCATGTGTGACATCGGTCAAGCTTTCTGCAATTGTTCCATCAAAATTTCAGATGCATGGCCTAGTCTAGAGGAAATGAACATCGACTATTGCCATGATTTGGTGTCATTGCCGGCCGAGCTCTGTGATTTTGTTTATCTAAAGAAACTCAGCATCACCAACTGCCATAAGCTATCCGCCTTGCCTGACGAGATCGAAAAGCTTGAGAATTTAGAGGTGTTGAGGCTAAGGTCCTGCACAGACTTGGTAAGCCTTCCGGGCTCGATTGAGAAACTTAATAAGCTGTACTTTCTTGACATATACAATTGTATCAGCATTAAGGAGTTGCCTGAACACATCGGCGAAATGAGTGGTTTAAGAAAGATAAACATGGGACAGTGCTCGAGATTGGAAGAGTTGCCGCTGTCAGTCTGGGATCTTGATCAGCAGTTAGAGGAAGTGATTTGTGATGCAGGGACAGAATATTTGTGGAAACCTTTCTTAGCTAGTTTCAGAGACAAAATCAAGGTGGCAAAAGAAAAAACCAATTTGAATTGGCTCGAAAAGCCTCAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

367

Amino Acids

42.15

Weight (kDa)

5.54

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005167)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15150 FvH4_6g50311
malus_domestica	MD02G1164500.v1.1 MD02G1165200.v1.1 MD02G1165700.v1.1 MD15G1263200.v1.1
prunus_persica	Prupe.7G139000_v2.0.a1
pyrus_communis	pycom02g13110 pycom02g13130 pycom15g23970 pycom15g24000
rosa_chinensis	RchiOBHm_Chr2g0104271 RchiOBHm_Chr2g0104291 RchiOBHm_Chr2g0104321 RchiOBHm_Chr2g0104341
rosa_laevigata	RLG00000016962 RLG00000017326
rosa_multiflora	Rmu_co8091214.1_g000001 Rmu_co8203698.1_g000001 Rmu_co8297485.1_g000001 Rmu_co8338119.1_g000001 Rmu_sc0000676.1_g000020 Rmu_sc0002316.1_g000098 Rmu_sc0002414.1_g000006 Rmu_sc0005137.1_g000003
rosa_samantha	Rh2BG177400 Rh2BG178100 Rh2DG176700 Rh2DG177000 Rh7AG022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	643
AccII	CGCG	1 cut(s)	137
AciI	CCGC	2 cut(s)	720, 944
AclWI	GGATC	1 cut(s)	966
AcoI	YGGCCR	1 cut(s)	657
AcsI	RAATTY	4 cut(s)	322, 353, 588, 751
AcuI	CTGAAG	1 cut(s)	548
AfaI	GTAC	3 cut(s)	297, 513, 830
AfiI	CCNNNNNNNGG	1 cut(s)	643
AgsI	TTSAA	4 cut(s)	322, 379, 520, 1075
AhdI	GACNNNNNGTC	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	44
AluBI	AGCT	7 cut(s)	121, 566, 664, 715, 745, 826, 1028
AluI	AGCT	7 cut(s)	121, 566, 664, 715, 745, 826, 1028
Alw21I	GWGCWC	2 cut(s)	666, 926
Alw26I	GTCTC	2 cut(s)	225, 1032
AlwI	GGATC	1 cut(s)	966
Ama87I	CYCGRG	1 cut(s)	925
AoxI	GGCC	2 cut(s)	602, 657
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	4 cut(s)	322, 353, 588, 751
ArsI	GACNNNNNNTTYG	2 cut(s)	991, 1023
Asp700I	GAANNNNTTC	1 cut(s)	1019
AspLEI	GCGC	1 cut(s)	480
AspS9I	GGNCC	1 cut(s)	774
AsuC2I	CCSGG	1 cut(s)	801
AsuHPI	GGTGA	1 cut(s)	691
AvaI	CYCGRG	1 cut(s)	925
AvaII	GGWCC	1 cut(s)	774
BaeI	ACNNNNGTAYC	2 cut(s)	835, 868
BanII	GRGCYC	2 cut(s)	666, 806
Bbv12I	GWGCWC	2 cut(s)	666, 926
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	3 cut(s)	236, 254, 590
BciT130I	CCWGG	1 cut(s)	46
BclI	TGATCA	1 cut(s)	964
BcnI	CCSGG	1 cut(s)	801
BcoDI	GTCTC	2 cut(s)	225, 1032
BfaI	CTAG	5 cut(s)	143, 314, 606, 611, 1029
BglI	GCCNNNNNGGC	1 cut(s)	801
BisI	GCNGC	2 cut(s)	119, 944
BlsI	GCNGC	2 cut(s)	120, 945
Bme1390I	CCNGG	2 cut(s)	46, 801
Bme18I	GGWCC	1 cut(s)	774
BmeRI	GACNNNNNGTC	1 cut(s)	173
BmeT110I	CYCGRG	1 cut(s)	925
BmgT120I	GGNCC	1 cut(s)	774
BmrFI	CCNGG	2 cut(s)	46, 801
BmsI	GCATC	3 cut(s)	586, 705, 982
BoxI	GACNNNNGTC	1 cut(s)	558
Bpu10I	CCTNAGC	2 cut(s)	113, 770
BpuEI	CTTGAG	2 cut(s)	40, 767
BpuMI	CCSGG	1 cut(s)	801
BsaBI	GATNNNNATC	1 cut(s)	963
Bsc4I	CCNNNNNNNGG	1 cut(s)	643
Bse118I	RCCGGY	1 cut(s)	655
Bse1I	ACTGG	2 cut(s)	187, 421
Bse3DI	GCAATG	1 cut(s)	650
Bse8I	GATNNNNATC	1 cut(s)	963
BseBI	CCWGG	1 cut(s)	46
BseGI	GGATG	1 cut(s)	76
BseJI	GATNNNNATC	1 cut(s)	963
BseLI	CCNNNNNNNGG	1 cut(s)	643
BseMI	GCAATG	1 cut(s)	650
BseMII	CTCAG	2 cut(s)	285, 706
BseNI	ACTGG	2 cut(s)	187, 421
BseRI	GAGGAG	1 cut(s)	244
BseX3I	CGGCCG	1 cut(s)	657
BseXI	GCAGC	1 cut(s)	130
BsgI	GTGCAG	1 cut(s)	763
Bsh1236I	CGCG	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	660
BshFI	GGCC	2 cut(s)	604, 659
BsiEI	CGRYCG	1 cut(s)	660
BsiHKAI	GWGCWC	2 cut(s)	666, 926
BsiHKCI	CYCGRG	1 cut(s)	925
BsiSI	CCGG	2 cut(s)	656, 800
BslFI	GGGAC	2 cut(s)	930, 1012
BslI	CCNNNNNNNGG	1 cut(s)	643
BsmAI	GTCTC	2 cut(s)	225, 1032
BsmFI	GGGAC	2 cut(s)	930, 1012
BsnI	GGCC	2 cut(s)	604, 659
BsoBI	CYCGRG	1 cut(s)	925
Bsp1286I	GDGCHC	3 cut(s)	666, 806, 926
Bsp143I	GATC	4 cut(s)	433, 735, 958, 964
BspACI	CCGC	2 cut(s)	720, 944
BspANI	GGCC	2 cut(s)	604, 659
BspCNI	CTCAG	2 cut(s)	284, 705
BspFNI	CGCG	1 cut(s)	137
BspPI	GGATC	1 cut(s)	966
BsrDI	GCAATG	1 cut(s)	650
BsrFI	RCCGGY	1 cut(s)	655
BsrI	ACTGG	2 cut(s)	187, 421
BssAI	RCCGGY	1 cut(s)	655
BssMI	GATC	4 cut(s)	433, 735, 958, 964
Bst2UI	CCWGG	1 cut(s)	46
Bst4CI	ACNGT	1 cut(s)	921
Bst6I	CTCTTC	2 cut(s)	515, 930
BstAPI	GCANNNNNTGC	1 cut(s)	109
BstC8I	GCNNGC	4 cut(s)	101, 123, 238, 657
BstDEI	CTNAG	6 cut(s)	113, 271, 692, 770, 1024, 1092
BstF5I	GGATG	1 cut(s)	76
BstFNI	CGCG	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	480
BstKTI	GATC	4 cut(s)	436, 738, 961, 967
BstMAI	GTCTC	2 cut(s)	225, 1032
BstMBI	GATC	4 cut(s)	433, 735, 958, 964
BstMCI	CGRYCG	1 cut(s)	660
BstMWI	GCNNNNNNNGC	5 cut(s)	109, 118, 661, 801, 1087
BstNI	CCWGG	1 cut(s)	46
BstPAI	GACNNNNGTC	1 cut(s)	558
BstSCI	CCNGG	2 cut(s)	44, 799
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	958
BstYI	RGATCY	1 cut(s)	958
BstZI	CGGCCG	1 cut(s)	657
BsuRI	GGCC	2 cut(s)	604, 659
BtsCI	GGATG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	926
Cac8I	GCNNGC	4 cut(s)	101, 123, 238, 657
CfoI	GCGC	1 cut(s)	480
Cfr10I	RCCGGY	1 cut(s)	655
Cfr13I	GGNCC	1 cut(s)	774
Csp6I	GTAC	3 cut(s)	296, 512, 829
CviAII	CATG	7 cut(s)	104, 293, 496, 547, 600, 638, 913
CviQI	GTAC	3 cut(s)	296, 512, 829
DdeI	CTNAG	6 cut(s)	113, 271, 692, 770, 1024, 1092
DpnI	GATC	4 cut(s)	435, 737, 960, 966
DpnII	GATC	4 cut(s)	433, 735, 958, 964
DriI	GACNNNNNGTC	1 cut(s)	173
EaeI	YGGCCR	1 cut(s)	657
EagI	CGGCCG	1 cut(s)	657
Eam1104I	CTCTTC	2 cut(s)	515, 930
Eam1105I	GACNNNNNGTC	1 cut(s)	173
EarI	CTCTTC	2 cut(s)	515, 930
EciI	GGCGGA	1 cut(s)	709
Ecl136II	GAGCTC	1 cut(s)	664
EclXI	CGGCCG	1 cut(s)	657
Eco24I	GRGCYC	2 cut(s)	666, 806
Eco47I	GGWCC	1 cut(s)	774
Eco52I	CGGCCG	1 cut(s)	657
Eco53kI	GAGCTC	1 cut(s)	664
Eco57I	CTGAAG	1 cut(s)	548
Eco88I	CYCGRG	1 cut(s)	925
EcoICRI	GAGCTC	1 cut(s)	664
EcoO109I	RGGNCCY	1 cut(s)	774
EcoRII	CCWGG	1 cut(s)	44
EcoT22I	ATGCAT	1 cut(s)	601
EcoT38I	GRGCYC	2 cut(s)	666, 806
FaeI	CATG	7 cut(s)	107, 296, 499, 550, 603, 641, 916
FalI	AAGNNNNNCTT	2 cut(s)	815, 847
FaqI	GGGAC	2 cut(s)	930, 1012
FatI	CATG	7 cut(s)	103, 292, 495, 546, 599, 637, 912
FbaI	TGATCA	1 cut(s)	964
Fnu4HI	GCNGC	2 cut(s)	119, 944
FokI	GGATG	1 cut(s)	83
FriOI	GRGCYC	2 cut(s)	666, 806
Fsp4HI	GCNGC	2 cut(s)	119, 944
FspBI	CTAG	5 cut(s)	143, 314, 606, 611, 1029
GlaI	GCGC	1 cut(s)	479
GluI	GCNGC	2 cut(s)	119, 944
HaeIII	GGCC	2 cut(s)	604, 659
HapII	CCGG	2 cut(s)	656, 800
HhaI	GCGC	1 cut(s)	480
Hin1II	CATG	7 cut(s)	107, 296, 499, 550, 603, 641, 916
Hin6I	GCGC	1 cut(s)	478
HinP1I	GCGC	1 cut(s)	478
HindIII	AAGCTT	2 cut(s)	564, 743
HinfI	GANTC	2 cut(s)	465, 523
HpaII	CCGG	2 cut(s)	656, 800
HphI	GGTGA	1 cut(s)	691
Hpy188I	TCNGA	4 cut(s)	259, 528, 595, 1037
Hpy188III	TCNNGA	6 cut(s)	19, 273, 611, 836, 927, 962
HpyAV	CCTTC	4 cut(s)	43, 373, 501, 806
HpyCH4III	ACNGT	1 cut(s)	921
HpyCH4V	TGCA	4 cut(s)	573, 599, 780, 995
HpyF10VI	GCNNNNNNNGC	5 cut(s)	109, 118, 661, 801, 1087
HpyF3I	CTNAG	6 cut(s)	113, 271, 692, 770, 1024, 1092
Hsp92II	CATG	7 cut(s)	107, 296, 499, 550, 603, 641, 916
HspAI	GCGC	1 cut(s)	478
KroI	GCCGGC	1 cut(s)	655
KroNI	GCCGGC	1 cut(s)	657
Ksp22I	TGATCA	1 cut(s)	964
Kzo9I	GATC	4 cut(s)	433, 735, 958, 964
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	3 cut(s)	586, 705, 982
MaeI	CTAG	5 cut(s)	143, 314, 606, 611, 1029
MaeIII	GTNAC	4 cut(s)	40, 178, 391, 551
MalI	GATC	4 cut(s)	435, 737, 960, 966
MboI	GATC	4 cut(s)	433, 735, 958, 964
MboII	GAAGA	5 cut(s)	167, 428, 532, 541, 947
MfeI	CAATTG	2 cut(s)	574, 847
MflI	RGATCY	1 cut(s)	958
MhlI	GDGCHC	3 cut(s)	666, 806, 926
MlyI	GAGTC	1 cut(s)	532
MnlI	CCTC	8 cut(s)	251, 265, 301, 607, 751, 759, 970, 1101
Mph1103I	ATGCAT	1 cut(s)	601
MroNI	GCCGGC	1 cut(s)	655
MroXI	GAANNNNTTC	1 cut(s)	1019
MseI	TTAA	5 cut(s)	327, 386, 819, 861, 899
MspA1I	CMGCKG	2 cut(s)	121, 946
MspI	CCGG	2 cut(s)	656, 800
MspR9I	CCNGG	2 cut(s)	46, 801
MunI	CAATTG	2 cut(s)	574, 847
MvaI	CCWGG	1 cut(s)	46
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	5 cut(s)	109, 118, 661, 801, 1087
NaeI	GCCGGC	1 cut(s)	657
NciI	CCSGG	1 cut(s)	801
NdeII	GATC	4 cut(s)	433, 735, 958, 964
NgoMIV	GCCGGC	1 cut(s)	655
NlaIII	CATG	7 cut(s)	107, 296, 499, 550, 603, 641, 916
NmeAIII	GCCGAG	1 cut(s)	685
NmuCI	GTSAC	2 cut(s)	391, 551
NsiI	ATGCAT	1 cut(s)	601
PaeR7I	CTCGAG	1 cut(s)	925
PdiI	GCCGGC	1 cut(s)	657
PdmI	GAANNNNTTC	1 cut(s)	1019
PfeI	GAWTC	1 cut(s)	465
PflMI	CCANNNNNTGG	1 cut(s)	643
PkrI	GCNGC	2 cut(s)	120, 945
PleI	GAGTC	1 cut(s)	531
PpsI	GAGTC	1 cut(s)	531
PpuMI	RGGWCCY	1 cut(s)	774
PshAI	GACNNNNGTC	1 cut(s)	558
Psp124BI	GAGCTC	1 cut(s)	666
Psp5II	RGGWCCY	1 cut(s)	774
Psp6I	CCWGG	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	774
PspPPI	RGGWCCY	1 cut(s)	774
PsuI	RGATCY	1 cut(s)	958
PvuII	CAGCTG	1 cut(s)	121
RsaI	GTAC	3 cut(s)	297, 513, 830
RsaNI	GTAC	3 cut(s)	296, 512, 829
SacI	GAGCTC	1 cut(s)	666
SaqAI	TTAA	5 cut(s)	327, 386, 819, 861, 899
SatI	GCNGC	2 cut(s)	119, 944
Sau3AI	GATC	4 cut(s)	433, 735, 958, 964
Sau96I	GGNCC	1 cut(s)	774
SchI	GAGTC	1 cut(s)	532
ScrFI	CCNGG	2 cut(s)	46, 801
SduI	GDGCHC	3 cut(s)	666, 806, 926
SfaNI	GCATC	3 cut(s)	586, 705, 982
Sfr274I	CTCGAG	1 cut(s)	925
SinI	GGWCC	1 cut(s)	774
SlaI	CTCGAG	1 cut(s)	925
SmlI	CTYRAG	3 cut(s)	19, 746, 925
SmoI	CTYRAG	3 cut(s)	19, 746, 925
SsiI	CCGC	2 cut(s)	720, 944
SspI	AATATT	1 cut(s)	1007
SspMI	CTAG	5 cut(s)	143, 314, 606, 611, 1029
SstI	GAGCTC	1 cut(s)	666
StyD4I	CCNGG	2 cut(s)	44, 799
TaaI	ACNGT	1 cut(s)	921
TaqI	TCGA	6 cut(s)	84, 627, 738, 806, 926, 1083
TaqII	GACCGA	1 cut(s)	548
TatI	WGTACW	1 cut(s)	828
TauI	GCSGC	1 cut(s)	946
TfiI	GAWTC	1 cut(s)	465
Tru1I	TTAA	5 cut(s)	327, 386, 819, 861, 899
Tru9I	TTAA	5 cut(s)	327, 386, 819, 861, 899
TscAI	CASTG	1 cut(s)	926
TseFI	GTSAC	2 cut(s)	391, 551
TseI	GCWGC	1 cut(s)	118
Tsp45I	GTSAC	2 cut(s)	391, 551
TspDTI	ATGAA	4 cut(s)	281, 435, 535, 635
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	1 cut(s)	926
Van91I	CCANNNNNTGG	1 cut(s)	643
VpaK11BI	GGWCC	1 cut(s)	774
XapI	RAATTY	4 cut(s)	322, 353, 588, 751
XbaI	TCTAGA	1 cut(s)	610
XhoI	CTCGAG	1 cut(s)	925
XmnI	GAANNNNTTC	1 cut(s)	1019
XspI	CTAG	5 cut(s)	143, 314, 606, 611, 1029
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.