Rh2BG177400

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0005167
Physical Location & Seq
Forward (+)
15748526 .. 15749338
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG177400.1

Sequence Viewer

Length: 813 bp
ATGCACAAGATTCAACTTTCAGATGTTGAGGTTCTAGTTTTGAATTTTCAGTCAGAGAACCATGCTTTACCCAAATTTGTGGCGGACATGAAAAACTTGAAGGTCCTAATAGTCACAAATAATGGTTCCTTGCCAGCTGAATTGAGTAACTTTCAACTACTGGATTCCTTGCCAAATCTGAAGAGAATCAGACTAGAACGAATTTCAATTCCTTCCATAACCAAGAATCGCATACAGTTGAAGAGTGTAAAGAAGATCTCTTTATTCATGTGTAGCATCGGTCAAGCTTTCAGCAACTCTTCCTTCCAAATTTCATATGCATTTCCAAATGTAGAGGAATTGAACATTGATTATTGCAATGATTTGGTGGAATTGTCTGGCGATCTCAGTGATCTGATTGAGCTAAGGAAGCTCAGTATCACCCACTGTCATAAGCTATCTGCCTTGCCTGAAGAGATAGGAAAGTTGATTAAATTGGTAGTGTTGAGGCTAAAGTCTTGTACGGACTTGGTAACATTTCCAGCCTCAATTAAGAACCTTGAAATGTTGCAGTTTCTCGACATATCTGATTGCTTCAGCATCAAGGAGTTGCCTGACGACATCGGTGAAATCAGCACGTTAGAAAAGATCAATATGAGACAGTGCTCTAGACTGAAAGATCTACCTCCATCAGTTTCTGATCTCGAGCAACTAAATGAAGTGATATGTGATGAGGACACAAAAGACTTATGGGAGATTTTCGGGCTCAAAATAGACATAAGGGTCCTCAAAGACGAATTCAACCTAGATTGGCTCTCAAAGTTTCAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

270

Amino Acids

30.78

Weight (kDa)

5.16

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 9 - 151 8.8e-07 Leucine-rich repeat region
LRR_14 PF23598 84 - 190 6e-09 Leucine-rich repeat region
LRR_14 PF23598 176 - 241 1.9e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 761
AciI CCGC 1 cut(s) 83
AcsI RAATTY 5 cut(s) 43, 74, 201, 309, 776
AcuI CTGAAG 3 cut(s) 200, 471, 559
AfaI GTAC 1 cut(s) 502
AluBI AGCT 5 cut(s) 137, 287, 403, 412, 436
AluI AGCT 5 cut(s) 137, 287, 403, 412, 436
Alw21I GWGCWC 1 cut(s) 647
Alw26I GTCTC 1 cut(s) 631
AlwNI CAGNNNCTG 1 cut(s) 677
Ama87I CYCGRG 1 cut(s) 683
ApoI RAATTY 5 cut(s) 43, 74, 201, 309, 776
AspS9I GGNCC 2 cut(s) 103, 763
AsuHPI GGTGA 2 cut(s) 412, 617
AvaI CYCGRG 1 cut(s) 683
AvaII GGWCC 2 cut(s) 103, 763
BanII GRGCYC 1 cut(s) 747
Bbv12I GWGCWC 1 cut(s) 647
BccI CCATC 1 cut(s) 676
BcoDI GTCTC 1 cut(s) 631
BfaI CTAG 4 cut(s) 35, 194, 648, 785
BglII AGATCT 2 cut(s) 255, 658
Bme18I GGWCC 2 cut(s) 103, 763
BmeT110I CYCGRG 1 cut(s) 683
BmgT120I GGNCC 2 cut(s) 103, 763
BmiI GGNNCC 2 cut(s) 127, 764
BmsI GCATC 2 cut(s) 285, 588
Bpu10I CCTNAGC 1 cut(s) 404
Bse1I ACTGG 1 cut(s) 165
Bse3DI GCAATG 1 cut(s) 364
BseMI GCAATG 1 cut(s) 364
BseMII CTCAG 2 cut(s) 400, 427
BseNI ACTGG 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 647
BsiHKCI CYCGRG 1 cut(s) 683
BsmAI GTCTC 1 cut(s) 631
BsoBI CYCGRG 1 cut(s) 683
Bsp1286I GDGCHC 2 cut(s) 647, 747
Bsp143I GATC 6 cut(s) 255, 382, 391, 627, 658, 679
BspACI CCGC 1 cut(s) 83
BspCNI CTCAG 2 cut(s) 399, 426
BspLI GGNNCC 2 cut(s) 127, 764
BsrDI GCAATG 1 cut(s) 364
BsrI ACTGG 1 cut(s) 165
BssMI GATC 6 cut(s) 255, 382, 391, 627, 658, 679
Bst4CI ACNGT 3 cut(s) 237, 428, 642
Bst6I CTCTTC 4 cut(s) 176, 236, 304, 447
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 3 cut(s) 386, 404, 413
BstKTI GATC 6 cut(s) 258, 385, 394, 630, 661, 682
BstMAI GTCTC 1 cut(s) 631
BstMBI GATC 6 cut(s) 255, 382, 391, 627, 658, 679
BstMWI GCNNNNNNNGC 1 cut(s) 409
BstX2I RGATCY 2 cut(s) 255, 658
BstXI CCANNNNNNTGG 1 cut(s) 79
BstYI RGATCY 2 cut(s) 255, 658
BtsIMutI CAGTG 3 cut(s) 394, 424, 647
Cac8I GCNNGC 1 cut(s) 135
CaiI CAGNNNCTG 1 cut(s) 677
Cfr13I GGNCC 2 cut(s) 103, 763
Csp6I GTAC 1 cut(s) 501
CviAII CATG 3 cut(s) 62, 88, 268
CviJI RGCY 9 cut(s) 137, 287, 403, 412, 436, 490, 524, 745, 793
CviKI_1 RGCY 9 cut(s) 137, 287, 403, 412, 436, 490, 524, 745, 793
CviQI GTAC 1 cut(s) 501
DdeI CTNAG 3 cut(s) 386, 404, 413
DpnI GATC 6 cut(s) 257, 384, 393, 629, 660, 681
DpnII GATC 6 cut(s) 255, 382, 391, 627, 658, 679
DrdI GACNNNNNNGTC 1 cut(s) 761
DseDI GACNNNNNNGTC 1 cut(s) 761
Eam1104I CTCTTC 4 cut(s) 176, 236, 304, 447
EarI CTCTTC 4 cut(s) 176, 236, 304, 447
EciI GGCGGA 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 747
Eco47I GGWCC 2 cut(s) 103, 763
Eco57I CTGAAG 3 cut(s) 200, 471, 559
Eco88I CYCGRG 1 cut(s) 683
EcoO109I RGGNCCY 2 cut(s) 103, 763
EcoRI GAATTC 1 cut(s) 776
EcoT22I ATGCAT 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 747
FaeI CATG 3 cut(s) 65, 91, 271
FatI CATG 3 cut(s) 61, 87, 267
FauNDI CATATG 1 cut(s) 316
FriOI GRGCYC 1 cut(s) 747
FspBI CTAG 4 cut(s) 35, 194, 648, 785
Hin1II CATG 3 cut(s) 65, 91, 271
HindIII AAGCTT 1 cut(s) 285
HinfI GANTC 4 cut(s) 10, 164, 186, 226
HphI GGTGA 2 cut(s) 412, 617
Hpy188I TCNGA 7 cut(s) 22, 55, 180, 191, 396, 568, 679
Hpy188III TCNNGA 4 cut(s) 557, 648, 683, 810
HpyAV CCTTC 3 cut(s) 94, 222, 313
HpyCH4III ACNGT 3 cut(s) 237, 428, 642
HpyCH4IV ACGT 1 cut(s) 617
HpyCH4V TGCA 4 cut(s) 4, 320, 357, 550
HpyF10VI GCNNNNNNNGC 1 cut(s) 409
HpyF3I CTNAG 3 cut(s) 386, 404, 413
HpySE526I ACGT 1 cut(s) 617
Hsp92II CATG 3 cut(s) 65, 91, 271
Kzo9I GATC 6 cut(s) 255, 382, 391, 627, 658, 679
LpnPI CCDG 6 cut(s) 146, 147, 363, 462, 534, 606
LweI GCATC 2 cut(s) 285, 588
MaeI CTAG 4 cut(s) 35, 194, 648, 785
MaeII ACGT 1 cut(s) 617
MaeIII GTNAC 3 cut(s) 112, 146, 511
MalI GATC 6 cut(s) 257, 384, 393, 629, 660, 681
MboI GATC 6 cut(s) 255, 382, 391, 627, 658, 679
MboII GAAGA 5 cut(s) 193, 253, 265, 291, 464
MflI RGATCY 2 cut(s) 255, 658
MhlI GDGCHC 2 cut(s) 647, 747
MnlI CCTC 7 cut(s) 22, 328, 480, 535, 675, 706, 776
Mph1103I ATGCAT 1 cut(s) 322
MseI TTAA 2 cut(s) 471, 531
MspA1I CMGCKG 1 cut(s) 137
MwoI GCNNNNNNNGC 1 cut(s) 409
NdeI CATATG 1 cut(s) 316
NdeII GATC 6 cut(s) 255, 382, 391, 627, 658, 679
NlaIII CATG 3 cut(s) 65, 91, 271
NlaIV GGNNCC 2 cut(s) 127, 764
NmuCI GTSAC 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 322
PaeR7I CTCGAG 1 cut(s) 683
PfeI GAWTC 4 cut(s) 10, 164, 186, 226
PpuMI RGGWCCY 2 cut(s) 103, 763
Psp5II RGGWCCY 2 cut(s) 103, 763
PspN4I GGNNCC 2 cut(s) 127, 764
PspPI GGNCC 2 cut(s) 103, 763
PspPPI RGGWCCY 2 cut(s) 103, 763
PstNI CAGNNNCTG 1 cut(s) 677
PsuI RGATCY 2 cut(s) 255, 658
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 1 cut(s) 502
RsaNI GTAC 1 cut(s) 501
SaqAI TTAA 2 cut(s) 471, 531
Sau3AI GATC 6 cut(s) 255, 382, 391, 627, 658, 679
Sau96I GGNCC 2 cut(s) 103, 763
SduI GDGCHC 2 cut(s) 647, 747
SfaNI GCATC 2 cut(s) 285, 588
Sfr274I CTCGAG 1 cut(s) 683
SinI GGWCC 2 cut(s) 103, 763
SlaI CTCGAG 1 cut(s) 683
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
SsiI CCGC 1 cut(s) 83
SspMI CTAG 4 cut(s) 35, 194, 648, 785
TaaI ACNGT 3 cut(s) 237, 428, 642
TaiI ACGT 1 cut(s) 620
TaqI TCGA 2 cut(s) 558, 684
TaqII GACCGA 1 cut(s) 269
TfiI GAWTC 4 cut(s) 10, 164, 186, 226
Tru1I TTAA 2 cut(s) 471, 531
Tru9I TTAA 2 cut(s) 471, 531
TscAI CASTG 3 cut(s) 394, 431, 647
TseFI GTSAC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 4 cut(s) 104, 256, 303, 711
TspGWI ACGGA 1 cut(s) 518
TspRI CASTG 3 cut(s) 394, 431, 647
VpaK11BI GGWCC 2 cut(s) 103, 763
XapI RAATTY 5 cut(s) 43, 74, 201, 309, 776
XbaI TCTAGA 1 cut(s) 647
XhoI CTCGAG 1 cut(s) 683
XspI CTAG 4 cut(s) 35, 194, 648, 785
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.