Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005167

Physical Location & Seq

Genomic Coordinates Forward (+)

9686662 .. 9687835

Gene Structure 1174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g13110.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGGGACTTTCGGTCCATCAAGAACCTCCACAAGCTCGCCAGGAAAGGTCTGGCAAATCTCGTCGATCACTAGGAAGGAGAATATGGAGATTCTGGATAACTACTACAGTGAACACTTTGTTCGCCAGCATGATATGCTTAGAGAGCTGGGTATCTACATTGCGAAACTAGACCCAATAGAAGATAGAAAAAGACTGATTGTCGTAAGTGGACGCAATCAACCCAAGTGGTTGAGGGAGCAGAAATCTCAAGCCATCAATGCTCGCCTATTATCTATCTCATCTGAGTCTGATTTGAATAGCACTATCATTTATGTTCTCCACACACATCAACACATACACAAGTACATGTATATGTACACACGCAAATGCATGTGCTCACACAGACACACGCTAAAATATGCAGTAAAGTTTAATGTAATTCTCACCTACTCATATCTCGTTGCATATTGTTTGCAGATGGAACGTACCCAACACAATGGCAGAACAGTGAACAATGCCTTACCTGAATTTGTGCAGAAAATTGACAAACTGAAGGTTCTAATATCTAATAGTCAAAACTATGCTTTATCACCTACTGAATTGAGTAATTTCTACCTTCTGGGATCATTATCAAATCGGAAGAGAATCAGATTAGAGAGCATTTCAATTCATTCCATAACCAAGAACTGGGTACCATTGAAGAGTCTAAAGAAGATATCTTCATTCATGTGTAACATGGGTCAAGCATTCCACAATTGTTCCATCAAAATTTCAGATGCCTGGCCAGGTTTAGAGGAAATGAATATCGACTATTGCCATGATTTGGTGGAACTGCCTGCCGAGCTCTGTGATCGTTCATATGAAGATTCTCAGTATCACCAACTGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

291

Amino Acids

33.83

Weight (kDa)

9.11

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005167)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15150 FvH4_6g50311
malus_domestica	MD02G1164500.v1.1 MD02G1165200.v1.1 MD02G1165700.v1.1 MD15G1263200.v1.1
prunus_persica	Prupe.7G139000_v2.0.a1
pyrus_communis	pycom02g13110 pycom02g13130 pycom15g23970 pycom15g24000
rosa_chinensis	RchiOBHm_Chr2g0104271 RchiOBHm_Chr2g0104291 RchiOBHm_Chr2g0104321 RchiOBHm_Chr2g0104341
rosa_laevigata	RLG00000016962 RLG00000017326
rosa_multiflora	Rmu_co8091214.1_g000001 Rmu_co8203698.1_g000001 Rmu_co8297485.1_g000001 Rmu_co8338119.1_g000001 Rmu_sc0000676.1_g000020 Rmu_sc0002316.1_g000098 Rmu_sc0002414.1_g000006 Rmu_sc0005137.1_g000003
rosa_samantha	Rh2BG177400 Rh2BG178100 Rh2DG176700 Rh2DG177000 Rh7AG022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	673
AccB1I	GGYRCC	1 cut(s)	673
AccB7I	CCANNNNNTGG	2 cut(s)	669, 805
AclWI	GGATC	1 cut(s)	613
AcoI	YGGCCR	1 cut(s)	764
AcsI	RAATTY	2 cut(s)	509, 750
AcuI	CTGAAG	1 cut(s)	554
AfaI	GTAC	4 cut(s)	347, 359, 469, 675
AfiI	CCNNNNNNNGG	2 cut(s)	669, 805
AflIII	ACRYGT	1 cut(s)	348
AgsI	TTSAA	3 cut(s)	298, 648, 682
AhdI	GACNNNNNGTC	2 cut(s)	12, 200
AjnI	CCWGG	3 cut(s)	40, 761, 766
AluBI	AGCT	3 cut(s)	36, 148, 826
AluI	AGCT	3 cut(s)	36, 148, 826
Alw21I	GWGCWC	2 cut(s)	380, 828
AlwI	GGATC	1 cut(s)	613
AoxI	GGCC	1 cut(s)	764
ApoI	RAATTY	2 cut(s)	509, 750
Asp718I	GGTACC	1 cut(s)	673
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	3 cut(s)	418, 564, 851
AvaII	GGWCC	1 cut(s)	14
BalI	TGGCCA	1 cut(s)	766
BanI	GGYRCC	1 cut(s)	673
BanII	GRGCYC	1 cut(s)	828
Bbv12I	GWGCWC	2 cut(s)	380, 828
BccI	CCATC	4 cut(s)	25, 263, 454, 752
BciT130I	CCWGG	3 cut(s)	42, 763, 768
BfaI	CTAG	2 cut(s)	72, 170
BfmI	CTRYAG	1 cut(s)	106
Bme1390I	CCNGG	3 cut(s)	42, 763, 768
Bme18I	GGWCC	1 cut(s)	14
BmeRI	GACNNNNNGTC	2 cut(s)	12, 200
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	1 cut(s)	675
BmrFI	CCNGG	3 cut(s)	42, 763, 768
BmrI	ACTGGG	1 cut(s)	679
BmsI	GCATC	1 cut(s)	748
BmuI	ACTGGG	1 cut(s)	679
BpuEI	CTTGAG	1 cut(s)	234
BsaBI	GATNNNNATC	1 cut(s)	610
Bsc4I	CCNNNNNNNGG	2 cut(s)	669, 805
Bse1I	ACTGG	1 cut(s)	674
Bse3DI	GCAATG	1 cut(s)	159
Bse8I	GATNNNNATC	1 cut(s)	610
BseBI	CCWGG	3 cut(s)	42, 763, 768
BseJI	GATNNNNATC	1 cut(s)	610
BseLI	CCNNNNNNNGG	2 cut(s)	669, 805
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	2 cut(s)	276, 866
BseNI	ACTGG	1 cut(s)	674
BseYI	CCCAGC	1 cut(s)	148
BsgI	GTGCAG	1 cut(s)	536
BshFI	GGCC	1 cut(s)	766
BshNI	GGYRCC	1 cut(s)	673
BsiHKAI	GWGCWC	2 cut(s)	380, 828
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	669, 805
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	728
BsnI	GGCC	1 cut(s)	766
Bsp1286I	GDGCHC	2 cut(s)	380, 828
Bsp1407I	TGTACA	1 cut(s)	357
Bsp143I	GATC	3 cut(s)	66, 605, 832
BspANI	GGCC	1 cut(s)	766
BspCNI	CTCAG	2 cut(s)	277, 865
BspLI	GGNNCC	1 cut(s)	675
BspPI	GGATC	1 cut(s)	613
BspT107I	GGYRCC	1 cut(s)	673
BsrDI	GCAATG	1 cut(s)	159
BsrGI	TGTACA	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	674
BssMI	GATC	3 cut(s)	66, 605, 832
Bst2UI	CCWGG	3 cut(s)	42, 763, 768
Bst4CI	ACNGT	2 cut(s)	110, 490
Bst6I	CTCTTC	2 cut(s)	617, 677
BstAPI	GCANNNNNTGC	1 cut(s)	136
BstAUI	TGTACA	1 cut(s)	357
BstC8I	GCNNGC	4 cut(s)	38, 128, 265, 819
BstDEI	CTNAG	3 cut(s)	140, 285, 852
BstKTI	GATC	3 cut(s)	69, 608, 835
BstMBI	GATC	3 cut(s)	66, 605, 832
BstMWI	GCNNNNNNNGC	4 cut(s)	136, 145, 260, 823
BstNI	CCWGG	3 cut(s)	42, 763, 768
BstNSI	RCATGY	2 cut(s)	352, 376
BstSCI	CCNGG	3 cut(s)	40, 761, 766
BstSFI	CTRYAG	1 cut(s)	106
BstXI	CCANNNNNNTGG	1 cut(s)	479
BsuRI	GGCC	1 cut(s)	766
BtsIMutI	CAGTG	2 cut(s)	115, 495
Cac8I	GCNNGC	4 cut(s)	38, 128, 265, 819
Cfr13I	GGNCC	1 cut(s)	14
CseI	GACGC	1 cut(s)	222
Csp6I	GTAC	4 cut(s)	346, 358, 468, 674
CspCI	CAANNNNNGTGG	2 cut(s)	209, 244
CviAII	CATG	6 cut(s)	131, 349, 373, 709, 718, 800
CviJI	RGCY	5 cut(s)	36, 148, 254, 766, 826
CviKI_1	RGCY	5 cut(s)	36, 148, 254, 766, 826
CviQI	GTAC	4 cut(s)	346, 358, 468, 674
DdeI	CTNAG	3 cut(s)	140, 285, 852
DpnI	GATC	3 cut(s)	68, 607, 834
DpnII	GATC	3 cut(s)	66, 605, 832
DriI	GACNNNNNGTC	2 cut(s)	12, 200
EaeI	YGGCCR	1 cut(s)	764
Eam1104I	CTCTTC	2 cut(s)	617, 677
Eam1105I	GACNNNNNGTC	2 cut(s)	12, 200
EarI	CTCTTC	2 cut(s)	617, 677
Ecl136II	GAGCTC	1 cut(s)	826
Eco24I	GRGCYC	1 cut(s)	828
Eco32I	GATATC	1 cut(s)	699
Eco47I	GGWCC	1 cut(s)	14
Eco53kI	GAGCTC	1 cut(s)	826
Eco57I	CTGAAG	1 cut(s)	554
EcoICRI	GAGCTC	1 cut(s)	826
EcoRII	CCWGG	3 cut(s)	40, 761, 766
EcoRV	GATATC	1 cut(s)	699
EcoT22I	ATGCAT	1 cut(s)	374
EcoT38I	GRGCYC	1 cut(s)	828
FaeI	CATG	6 cut(s)	134, 352, 376, 712, 721, 803
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	6 cut(s)	130, 348, 372, 708, 717, 799
FauNDI	CATATG	1 cut(s)	841
FriOI	GRGCYC	1 cut(s)	828
FspBI	CTAG	2 cut(s)	72, 170
GsaI	CCCAGC	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	766
HgaI	GACGC	1 cut(s)	222
Hin1II	CATG	6 cut(s)	134, 352, 376, 712, 721, 803
HinfI	GANTC	5 cut(s)	91, 287, 627, 685, 848
HphI	GGTGA	3 cut(s)	418, 564, 851
Hpy166II	GTNNAC	4 cut(s)	113, 212, 360, 493
Hpy188I	TCNGA	5 cut(s)	286, 292, 621, 632, 757
Hpy188III	TCNNGA	2 cut(s)	21, 95
Hpy8I	GTNNAC	4 cut(s)	113, 212, 360, 493
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	3 cut(s)	70, 529, 608
HpyCH4III	ACNGT	2 cut(s)	110, 490
HpyCH4IV	ACGT	1 cut(s)	466
HpyCH4V	TGCA	5 cut(s)	372, 404, 446, 457, 517
HpyF10VI	GCNNNNNNNGC	4 cut(s)	136, 145, 260, 823
HpyF3I	CTNAG	3 cut(s)	140, 285, 852
HpySE526I	ACGT	1 cut(s)	466
Hsp92II	CATG	6 cut(s)	134, 352, 376, 712, 721, 803
KpnI	GGTACC	1 cut(s)	677
Kzo9I	GATC	3 cut(s)	66, 605, 832
LmnI	GCTCC	1 cut(s)	238
LweI	GCATC	1 cut(s)	748
MaeI	CTAG	2 cut(s)	72, 170
MaeII	ACGT	1 cut(s)	466
MaeIII	GTNAC	1 cut(s)	713
MalI	GATC	3 cut(s)	68, 607, 834
MboI	GATC	3 cut(s)	66, 605, 832
MboII	GAAGA	6 cut(s)	194, 634, 693, 694, 706, 857
MfeI	CAATTG	1 cut(s)	736
MhlI	GDGCHC	2 cut(s)	380, 828
MlsI	TGGCCA	1 cut(s)	766
MluCI	AATT	8 cut(s)	420, 509, 522, 581, 589, 648, 736, 750
MluNI	TGGCCA	1 cut(s)	766
MlyI	GAGTC	2 cut(s)	296, 694
MnlI	CCTC	3 cut(s)	37, 228, 769
Mox20I	TGGCCA	1 cut(s)	766
Mph1103I	ATGCAT	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	766
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	3 cut(s)	353, 367, 709
Msp20I	TGGCCA	1 cut(s)	766
MspR9I	CCNGG	3 cut(s)	42, 763, 768
MunI	CAATTG	1 cut(s)	736
Mva1269I	GAATGC	1 cut(s)	728
MvaI	CCWGG	3 cut(s)	42, 763, 768
MwoI	GCNNNNNNNGC	4 cut(s)	136, 145, 260, 823
NdeI	CATATG	1 cut(s)	841
NdeII	GATC	3 cut(s)	66, 605, 832
NlaIII	CATG	6 cut(s)	134, 352, 376, 712, 721, 803
NlaIV	GGNNCC	1 cut(s)	675
NmeAIII	GCCGAG	1 cut(s)	847
NsiI	ATGCAT	1 cut(s)	374
NspI	RCATGY	2 cut(s)	352, 376
PciI	ACATGT	1 cut(s)	348
PctI	GAATGC	1 cut(s)	728
PfeI	GAWTC	3 cut(s)	91, 627, 848
PflMI	CCANNNNNTGG	2 cut(s)	669, 805
PleI	GAGTC	2 cut(s)	295, 693
PpsI	GAGTC	2 cut(s)	295, 693
PscI	ACATGT	1 cut(s)	348
Psp124BI	GAGCTC	1 cut(s)	828
Psp6I	CCWGG	3 cut(s)	40, 761, 766
PspFI	CCCAGC	1 cut(s)	148
PspGI	CCWGG	3 cut(s)	40, 761, 766
PspN4I	GGNNCC	1 cut(s)	675
PspPI	GGNCC	1 cut(s)	14
RsaI	GTAC	4 cut(s)	347, 359, 469, 675
RsaNI	GTAC	4 cut(s)	346, 358, 468, 674
RseI	CAYNNNNRTG	3 cut(s)	353, 367, 709
SacI	GAGCTC	1 cut(s)	828
SaqAI	TTAA	1 cut(s)	414
Sau3AI	GATC	3 cut(s)	66, 605, 832
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	2 cut(s)	296, 694
ScrFI	CCNGG	3 cut(s)	42, 763, 768
SduI	GDGCHC	2 cut(s)	380, 828
SfaNI	GCATC	1 cut(s)	748
SfcI	CTRYAG	1 cut(s)	106
SinI	GGWCC	1 cut(s)	14
SmiMI	CAYNNNNRTG	3 cut(s)	353, 367, 709
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
Sse9I	AATT	8 cut(s)	420, 509, 522, 581, 589, 648, 736, 750
SspMI	CTAG	2 cut(s)	72, 170
SstI	GAGCTC	1 cut(s)	828
StyD4I	CCNGG	3 cut(s)	40, 761, 766
TaaI	ACNGT	2 cut(s)	110, 490
TaiI	ACGT	1 cut(s)	469
TaqI	TCGA	2 cut(s)	65, 789
TasI	AATT	8 cut(s)	420, 509, 522, 581, 589, 648, 736, 750
TatI	WGTACW	2 cut(s)	345, 357
TfiI	GAWTC	3 cut(s)	91, 627, 848
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	2 cut(s)	115, 495
TspDTI	ATGAA	6 cut(s)	641, 693, 697, 797, 828, 858
TspRI	CASTG	2 cut(s)	115, 495
Van91I	CCANNNNNTGG	2 cut(s)	669, 805
VpaK11BI	GGWCC	1 cut(s)	14
XapI	RAATTY	2 cut(s)	509, 750
XceI	RCATGY	2 cut(s)	352, 376
XcmI	CCANNNNNNNNNTGG	1 cut(s)	48
XspI	CTAG	2 cut(s)	72, 170
Zsp2I	ATGCAT	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.