Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005167

Physical Location & Seq

Genomic Coordinates Forward (+)

11672024 .. 11673472

Gene Structure 1449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016962

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTGCAAAATTGGTCAAGCTTTTAGCAACTGTTCCGTCGAACTTGCAGATCTATTGCCAAATGTAGTGGAAATGAACATTGATGACTGCAATGATTTGGTGGAATTGCCCGCCATGCTCTGTGACCTAATTTCCCTGAAAAAGCTCAGTATCGCCAACTCTCATAAGCTGTCTGCCTTACCTGAAGACATAGGAAAATTGGTAAACTTACAAGTGCTGAGGCTTAGGTCCTGTACAGACTTGTCAGAGTTTCCGGATTCAATTCAGAGCCTCATAAACTTAACCTTTCTTGACATCTCTGATTGCTTCAGTATCAAGGAGTTGCCTGAACATATACGTGAAATGCGCAGCTTAGAAACACTCAACATGAGACAATGCTCAAGACTGCAGGAGCTGCCTGCGTCAGTTTTGGATCTTGAACAGTTAAAGGATGTGATATGCGACGAAGAGACTAAAGTTTTATGGGAACCCTACTTATCTGTTCTGAAAAGCATACATGTTGATATTGATCTTATTGCACAGAATCAAGAATGGTTGCCTAGTTGGAGTACCAGAGTAGAGCTTGCTGCGGAGGCTCTTCTAGGAGAAGCTAGCAGTCCCGAAGGTGGTTGCTGCCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

207

Amino Acids

23.07

Weight (kDa)

4.44

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	38 - 100	1.1e-09	Leucine-rich repeat region
LRR_14	PF23598	88 - 153	1.8e-10	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005167)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15150 FvH4_6g50311
malus_domestica	MD02G1164500.v1.1 MD02G1165200.v1.1 MD02G1165700.v1.1 MD15G1263200.v1.1
prunus_persica	Prupe.7G139000_v2.0.a1
pyrus_communis	pycom02g13110 pycom02g13130 pycom15g23970 pycom15g24000
rosa_chinensis	RchiOBHm_Chr2g0104271 RchiOBHm_Chr2g0104291 RchiOBHm_Chr2g0104321 RchiOBHm_Chr2g0104341
rosa_laevigata	RLG00000016962 RLG00000017326
rosa_multiflora	Rmu_co8091214.1_g000001 Rmu_co8203698.1_g000001 Rmu_co8297485.1_g000001 Rmu_co8338119.1_g000001 Rmu_sc0000676.1_g000020 Rmu_sc0002316.1_g000098 Rmu_sc0002414.1_g000006 Rmu_sc0005137.1_g000003
rosa_samantha	Rh2BG177400 Rh2BG178100 Rh2DG176700 Rh2DG177000 Rh7AG022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	347
AccIII	TCCGGA	1 cut(s)	253
AciI	CCGC	2 cut(s)	111, 569
AclWI	GGATC	1 cut(s)	420
AcuI	CTGAAG	2 cut(s)	204, 292
AfaI	GTAC	2 cut(s)	235, 550
AfiI	CCNNNNNNNGG	1 cut(s)	605
AflIII	ACRYGT	1 cut(s)	496
AgsI	TTSAA	2 cut(s)	261, 419
AluBI	AGCT	7 cut(s)	20, 145, 169, 351, 394, 562, 590
AluI	AGCT	7 cut(s)	20, 145, 169, 351, 394, 562, 590
Alw26I	GTCTC	2 cut(s)	364, 443
AlwI	GGATC	1 cut(s)	420
AlwNI	CAGNNNCTG	1 cut(s)	394
Aor13HI	TCCGGA	1 cut(s)	253
ApeKI	GCWGC	4 cut(s)	348, 394, 566, 612
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	228
AsuNHI	GCTAGC	1 cut(s)	590
AvaII	GGWCC	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	192
BbvCI	CCTCAGC	1 cut(s)	218
BbvI	GCAGC	4 cut(s)	360, 381, 553, 599
BceAI	ACGGC	1 cut(s)	600
BcoDI	GTCTC	2 cut(s)	364, 443
BfaI	CTAG	3 cut(s)	540, 581, 591
BfmI	CTRYAG	1 cut(s)	386
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	4 cut(s)	349, 395, 567, 613
BlsI	GCNGC	4 cut(s)	350, 396, 568, 614
Bme18I	GGWCC	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	228
BmiI	GGNNCC	1 cut(s)	468
BmtI	GCTAGC	1 cut(s)	594
BpiI	GAAGAC	1 cut(s)	192
Bpu10I	CCTNAGC	2 cut(s)	218, 224
BpuEI	CTTGAG	1 cut(s)	364
BsaAI	YACGTR	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	507
BsaWI	WCCGGW	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	1 cut(s)	605
Bse3DI	GCAATG	1 cut(s)	97
Bse8I	GATNNNNATC	1 cut(s)	507
BseAI	TCCGGA	1 cut(s)	253
BseGI	GGATG	1 cut(s)	436
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	1 cut(s)	605
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	2 cut(s)	160, 209
BseXI	GCAGC	4 cut(s)	360, 381, 553, 599
BsiSI	CCGG	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	582
BslI	CCNNNNNNNGG	1 cut(s)	605
BsmAI	GTCTC	2 cut(s)	364, 443
BsmFI	GGGAC	1 cut(s)	582
Bsp13I	TCCGGA	1 cut(s)	253
Bsp1407I	TGTACA	1 cut(s)	233
Bsp143I	GATC	3 cut(s)	49, 412, 508
BspACI	CCGC	2 cut(s)	111, 569
BspCNI	CTCAG	2 cut(s)	159, 210
BspEI	TCCGGA	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	468
BspMAI	CTGCAG	1 cut(s)	390
BspOI	GCTAGC	1 cut(s)	594
BspPI	GGATC	1 cut(s)	420
BspQI	GCTCTTC	1 cut(s)	582
BsrDI	GCAATG	1 cut(s)	97
BsrGI	TGTACA	1 cut(s)	233
BssMI	GATC	3 cut(s)	49, 412, 508
Bst4CI	ACNGT	2 cut(s)	32, 423
Bst6I	CTCTTC	2 cut(s)	441, 582
BstAPI	GCANNNNNTGC	1 cut(s)	394
BstAUI	TGTACA	1 cut(s)	233
BstBAI	YACGTR	1 cut(s)	338
BstC8I	GCNNGC	4 cut(s)	111, 399, 564, 592
BstDEI	CTNAG	4 cut(s)	146, 218, 224, 352
BstF5I	GGATG	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	3 cut(s)	52, 415, 511
BstMAI	GTCTC	2 cut(s)	364, 443
BstMBI	GATC	3 cut(s)	49, 412, 508
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 394, 572
BstNSI	RCATGY	1 cut(s)	500
BstSFI	CTRYAG	1 cut(s)	386
BstV1I	GCAGC	4 cut(s)	360, 381, 553, 599
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	2 cut(s)	49, 412
BstYI	RGATCY	2 cut(s)	49, 412
BtsCI	GGATG	1 cut(s)	436
Cac8I	GCNNGC	4 cut(s)	111, 399, 564, 592
CaiI	CAGNNNCTG	1 cut(s)	394
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	228
CseI	GACGC	1 cut(s)	390
Csp6I	GTAC	2 cut(s)	234, 549
CspCI	CAANNNNNGTGG	2 cut(s)	48, 83
CviAII	CATG	3 cut(s)	115, 367, 497
CviQI	GTAC	2 cut(s)	234, 549
DdeI	CTNAG	4 cut(s)	146, 218, 224, 352
DpnI	GATC	3 cut(s)	51, 414, 510
DpnII	GATC	3 cut(s)	49, 412, 508
Eam1104I	CTCTTC	2 cut(s)	441, 582
EarI	CTCTTC	2 cut(s)	441, 582
Eco47I	GGWCC	1 cut(s)	228
Eco57I	CTGAAG	2 cut(s)	204, 292
EcoO109I	RGGNCCY	1 cut(s)	228
FaeI	CATG	3 cut(s)	118, 370, 500
FaqI	GGGAC	1 cut(s)	582
FatI	CATG	3 cut(s)	114, 366, 496
FauI	CCCGC	1 cut(s)	118
Fnu4HI	GCNGC	4 cut(s)	349, 395, 567, 613
FokI	GGATG	1 cut(s)	443
Fsp4HI	GCNGC	4 cut(s)	349, 395, 567, 613
FspBI	CTAG	3 cut(s)	540, 581, 591
FspI	TGCGCA	1 cut(s)	347
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	4 cut(s)	349, 395, 567, 613
HapII	CCGG	1 cut(s)	254
HgaI	GACGC	1 cut(s)	390
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	3 cut(s)	118, 370, 500
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	2 cut(s)	257, 523
HpaII	CCGG	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	4 cut(s)	247, 267, 301, 486
Hpy188III	TCNNGA	6 cut(s)	254, 290, 381, 416, 527, 599
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	2 cut(s)	41, 446
HpyAV	CCTTC	1 cut(s)	596
HpyCH4III	ACNGT	2 cut(s)	32, 423
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	5 cut(s)	6, 47, 90, 388, 518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 394, 572
HpyF3I	CTNAG	4 cut(s)	146, 218, 224, 352
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	3 cut(s)	118, 370, 500
HspAI	GCGC	1 cut(s)	346
Kpn2I	TCCGGA	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	49, 412, 508
LguI	GCTCTTC	1 cut(s)	582
LmnI	GCTCC	1 cut(s)	391
LpnPI	CCDG	8 cut(s)	149, 195, 244, 267, 339, 374, 411, 565
Lsp1109I	GCAGC	4 cut(s)	360, 381, 553, 599
MaeI	CTAG	3 cut(s)	540, 581, 591
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	3 cut(s)	51, 414, 510
MboI	GATC	3 cut(s)	49, 412, 508
MboII	GAAGA	3 cut(s)	197, 458, 569
MflI	RGATCY	2 cut(s)	49, 412
MluCI	AATT	5 cut(s)	9, 104, 129, 197, 261
MmeI	TCCRAC	1 cut(s)	524
MnlI	CCTC	3 cut(s)	213, 281, 565
MroI	TCCGGA	1 cut(s)	253
MseI	TTAA	3 cut(s)	281, 425, 619
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	3 cut(s)	115, 394, 572
NdeII	GATC	3 cut(s)	49, 412, 508
NheI	GCTAGC	1 cut(s)	590
NlaIII	CATG	3 cut(s)	118, 370, 500
NlaIV	GGNNCC	1 cut(s)	468
NmuCI	GTSAC	1 cut(s)	122
NsbI	TGCGCA	1 cut(s)	347
NspI	RCATGY	1 cut(s)	500
PciI	ACATGT	1 cut(s)	496
PciSI	GCTCTTC	1 cut(s)	582
PfeI	GAWTC	2 cut(s)	257, 523
PkrI	GCNGC	4 cut(s)	350, 396, 568, 614
Ppu21I	YACGTR	1 cut(s)	338
PpuMI	RGGWCCY	1 cut(s)	228
PscI	ACATGT	1 cut(s)	496
Psp5II	RGGWCCY	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	1 cut(s)	228
PspPPI	RGGWCCY	1 cut(s)	228
PstI	CTGCAG	1 cut(s)	390
PstNI	CAGNNNCTG	1 cut(s)	394
PsuI	RGATCY	2 cut(s)	49, 412
RsaI	GTAC	2 cut(s)	235, 550
RsaNI	GTAC	2 cut(s)	234, 549
RseI	CAYNNNNRTG	1 cut(s)	336
SapI	GCTCTTC	1 cut(s)	582
SaqAI	TTAA	3 cut(s)	281, 425, 619
SatI	GCNGC	4 cut(s)	349, 395, 567, 613
Sau3AI	GATC	3 cut(s)	49, 412, 508
Sau96I	GGNCC	1 cut(s)	228
SfcI	CTRYAG	1 cut(s)	386
SinI	GGWCC	1 cut(s)	228
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
Sse9I	AATT	5 cut(s)	9, 104, 129, 197, 261
SsiI	CCGC	2 cut(s)	111, 569
SspMI	CTAG	3 cut(s)	540, 581, 591
TaaI	ACNGT	2 cut(s)	32, 423
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	1 cut(s)	39
TasI	AATT	5 cut(s)	9, 104, 129, 197, 261
TatI	WGTACW	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	257, 523
Tru1I	TTAA	3 cut(s)	281, 425, 619
Tru9I	TTAA	3 cut(s)	281, 425, 619
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	4 cut(s)	348, 394, 566, 612
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	1 cut(s)	89
TspGWI	ACGGA	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	228
XceI	RCATGY	1 cut(s)	500
XspI	CTAG	3 cut(s)	540, 581, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.