FvH4_1g16170

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0004213
Physical Location & Seq
Forward (+)
9257475 .. 9259872
2398 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16170.t1

Sequence Viewer

Length: 381 bp
ATGGGCATCTCGGGTGAGAAACTAGAAAGCATTAGTATCGATTGGACATTTGGTTCAGGTAGCACTAAATCTTTAAATTTATCTGCTCCAAATCTTGAATATTTGCACTGGGATGGAAATTTGGTGAATCACCCAAACCTGGGAAAATTAGAAAGGTTAGAAGAAGCTTTGATCTTACTGGAGCCTACAGAAGCAGATATTGACAATGGATTTGAGGTTGTTTGCAGTTTATCCAGAGTTGAAGATCTTACTCTAAACGCAGAGACCATCAAGGCTCTTCTTCGTGAAGGATTAAAGACACCACCATTTGATAATGTGATAATGTTAGCAATCTACGTATGCATATTGCTAACTTTGTTGATGAACTTGTCCCAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

127

Amino Acids

13.94

Weight (kDa)

4.43

Isoelectric Point (pI)

25.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 76, 118
AfiI CCNNNNNNNGG 2 cut(s) 139, 140
AgsI TTSAA 2 cut(s) 98, 242
AjnI CCWGG 1 cut(s) 138
AloI GAACNNNNNNTCC 2 cut(s) 37, 69
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 257
Ama87I CYCGRG 1 cut(s) 10
ApoI RAATTY 2 cut(s) 76, 118
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
AsuHPI GGTGA 3 cut(s) 26, 122, 136
AvaI CYCGRG 1 cut(s) 10
BccI CCATC 2 cut(s) 107, 275
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 186
BglII AGATCT 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 140
BmeT110I CYCGRG 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 140
BmrI ACTGGG 1 cut(s) 118
BmsI GCATC 1 cut(s) 15
BmuI ACTGGG 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 200
Bsa29I ATCGAT 1 cut(s) 39
BsaAI YACGTR 1 cut(s) 337
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 139
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 140
Bse1I ACTGG 2 cut(s) 113, 183
BseBI CCWGG 1 cut(s) 140
BseCI ATCGAT 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 139
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 2 cut(s) 139, 140
BseNI ACTGG 2 cut(s) 113, 183
BseYI CCCAGC 1 cut(s) 372
BshVI ATCGAT 1 cut(s) 39
BsiHKCI CYCGRG 1 cut(s) 10
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 2 cut(s) 139, 140
BsmAI GTCTC 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 355
Bso31I GGTCTC 1 cut(s) 257
BsoBI CYCGRG 1 cut(s) 10
Bsp143I GATC 2 cut(s) 171, 244
BspDI ATCGAT 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 183
BspQI GCTCTTC 1 cut(s) 282
BspTNI GGTCTC 1 cut(s) 257
BsrI ACTGG 2 cut(s) 113, 183
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 2 cut(s) 171, 244
Bst2UI CCWGG 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 282
BstBAI YACGTR 1 cut(s) 337
BstF5I GGATG 1 cut(s) 118
BstKTI GATC 2 cut(s) 174, 247
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 2 cut(s) 171, 244
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 138
BstSFI CTRYAG 1 cut(s) 186
BstSNI TACGTA 1 cut(s) 337
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
Bsu15I ATCGAT 1 cut(s) 39
BsuTUI ATCGAT 1 cut(s) 39
BtsCI GGATG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 106
ClaI ATCGAT 1 cut(s) 39
CviJI RGCY 3 cut(s) 167, 184, 275
CviKI_1 RGCY 3 cut(s) 167, 184, 275
DpnI GATC 2 cut(s) 173, 246
DpnII GATC 2 cut(s) 171, 244
DraI TTTAAA 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco105I TACGTA 1 cut(s) 337
Eco31I GGTCTC 1 cut(s) 257
Eco88I CYCGRG 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 138
EcoT22I ATGCAT 1 cut(s) 344
FaiI YATR 2 cut(s) 340, 344
FaqI GGGAC 1 cut(s) 355
FokI GGATG 1 cut(s) 125
FspBI CTAG 1 cut(s) 23
GsaI CCCAGC 1 cut(s) 376
GsuI CTGGAG 1 cut(s) 200
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 1 cut(s) 127
HphI GGTGA 3 cut(s) 26, 122, 136
Hpy188III TCNNGA 3 cut(s) 95, 234, 284
HpyAV CCTTC 1 cut(s) 281
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 3 cut(s) 106, 225, 342
HpySE526I ACGT 1 cut(s) 336
Kzo9I GATC 2 cut(s) 171, 244
LguI GCTCTTC 1 cut(s) 282
LmnI GCTCC 2 cut(s) 91, 181
LpnPI CCDG 6 cut(s) 42, 94, 125, 152, 164, 247
LweI GCATC 1 cut(s) 15
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 336
MalI GATC 2 cut(s) 173, 246
MboI GATC 2 cut(s) 171, 244
MboII GAAGA 4 cut(s) 173, 254, 269, 272
MflI RGATCY 1 cut(s) 244
MluCI AATT 3 cut(s) 76, 118, 146
MnlI CCTC 1 cut(s) 208
Mph1103I ATGCAT 1 cut(s) 344
MseI TTAA 2 cut(s) 74, 293
MslI CAYNNNNRTG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 140
NdeII GATC 2 cut(s) 171, 244
NlaIV GGNNCC 1 cut(s) 183
NsiI ATGCAT 1 cut(s) 344
PciSI GCTCTTC 1 cut(s) 282
PfeI GAWTC 1 cut(s) 127
Ppu21I YACGTR 1 cut(s) 337
Psp6I CCWGG 1 cut(s) 138
PspFI CCCAGC 1 cut(s) 372
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 183
PsuI RGATCY 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 111
SapI GCTCTTC 1 cut(s) 282
SaqAI TTAA 2 cut(s) 74, 293
Sau3AI GATC 2 cut(s) 171, 244
ScrFI CCNGG 1 cut(s) 140
SetI ASST 6 cut(s) 61, 141, 158, 169, 219, 339
SfaNI GCATC 1 cut(s) 15
SfcI CTRYAG 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 111
SnaBI TACGTA 1 cut(s) 337
Sse9I AATT 3 cut(s) 76, 118, 146
SspI AATATT 1 cut(s) 101
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 138
TaiI ACGT 1 cut(s) 339
TaqI TCGA 1 cut(s) 39
TasI AATT 3 cut(s) 76, 118, 146
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 2 cut(s) 74, 293
Tru9I TTAA 2 cut(s) 74, 293
TscAI CASTG 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 377
TspRI CASTG 1 cut(s) 113
XapI RAATTY 2 cut(s) 76, 118
XspI CTAG 1 cut(s) 23
Zsp2I ATGCAT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.