Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004213

Physical Location & Seq

Genomic Coordinates Forward (+)

18190205 .. 18191798

Gene Structure 1594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG104700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGACTCTTGAAGCACCACCAGTATCTCTTTCCTGCAATCTCCGTTACTTGCAGTTGACTTCTGTTAGAATAGCAGATGAAAAGTTTTGCAAGTGGATCTCCTCTAGCTGCAAATGCATTAAGAAATTACAGCTTATTCAAGTTAAAGGGATTAAAAATATTACCATTCAAAGCTCGTCTTTGGAGTCATTTACTTTTGTTGGTATGGACCTGGTCGACCTTAATATCTCCTGTCAGAAACTTAGAAGTATTAAAATAAAGTGGAACTTTTATGCTTCACCTGGGTACCGCTCATCGAATATATCTGCTCCAAATCTGGAAGATTTAACATGGGTGGGCAAGGTCTTGAATAGCCAAAACCTGGGCAAATTACTGAATTTAAAAAGAGCTTTCATTGCTCTTGAGCCTACGGTAGATGACAATTTATCTGAGGTCTTTTCTAGTATATGTAGGACTAAAGATCTTGGTATAAATGAGAACACCATGAAGGCTATGTTCAAAGATTGTTTCATGCAAGCACCATTAGATGACATTCGTCGCCTGGGTCTTATTCAACTTACGAGCTTCAGTAATGACATAGTTCCAATAACGGCCTCTCTTCTCAGAAGAACTGGTTATCTGAATAGCTTGGTACTGATGAGTTCTAAACCTTCTAGATCGGACTCTAAATCTATATCTTCATCTGGATTTGATATGGGATACTGGAAATTGCAAAACCTCACTTTCATTTACCAGCTGAAGGATGTGAGAATAGACCTCTCCAGCGGGTCTAATGAAATTGAGTTTGCAAAGTACATTCTCGAAAATGCTCCGAATTTGAAGAAGATCGTGATCCGTCATCATCCGGGATCCCAACAATCAAATATCGTGGTAGGGAAGGTGACCAGATGCAAGATCATTTCGAGAGCCATTATTGTGATCCAGGAAATTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

311

Amino Acids

35.03

Weight (kDa)

9.51

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	6 - 306	3.4e-09	At1g61320/AtMIF1, LRR domain
FBD	PF08387	257 - 278	6.5e-06	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004213)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16170 FvH4_6g18953 FvH4_7g04740 FvH4_7g04740
malus_domestica	MD02G1269000.v1.1 MD04G1145300.v1.1 MD04G1145500.v1.1 MD04G1145600.v1.1 MD04G1145900.v1.1 MD12G1159100.v1.1
prunus_persica	Prupe.2G052100_v2.0.a1 Prupe.7G105700_v2.0.a1 Prupe.7G106400_v2.0.a1
pyrus_communis	pycom04g13150
rosa_chinensis	RchiOBHm_Chr1g0330111
rosa_laevigata	RLG00000029830
rosa_multiflora	Rmu_sc0004673.1_g000009
rosa_roxburghii	Rroxscaffold_4G00320200 Rroxscaffold_4G00320300 Rroxscaffold_4G00320320 Rroxscaffold_4G00320330
rosa_rugosa	Rorug01G0086000 Rorug01G0086100 Rorug01G0086200 Rorug02G0131100 Rorug03G0137300
rosa_samantha	Rh1AG104600 Rh1AG104700 Rh1BG082800 Rh1CG100200 Rh1DG107500 Rh1DG108500
rosa_wichuraiana	Rw0G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	285
AccB1I	GGYRCC	1 cut(s)	285
AccB7I	CCANNNNNTGG	1 cut(s)	361
AccBSI	CCGCTC	1 cut(s)	291
AccI	GTMKAC	1 cut(s)	216
AciI	CCGC	2 cut(s)	289, 765
AclWI	GGATC	5 cut(s)	104, 826, 843, 856, 913
AcsI	RAATTY	3 cut(s)	376, 814, 927
AcuI	CTGAAG	2 cut(s)	550, 758
AfaI	GTAC	3 cut(s)	287, 633, 794
AfiI	CCNNNNNNNGG	2 cut(s)	361, 739
AgsI	TTSAA	7 cut(s)	11, 140, 170, 349, 499, 554, 820
AjnI	CCWGG	5 cut(s)	210, 280, 360, 540, 921
AluBI	AGCT	7 cut(s)	108, 133, 174, 389, 564, 627, 736
AluI	AGCT	7 cut(s)	108, 133, 174, 389, 564, 627, 736
AlwI	GGATC	5 cut(s)	104, 826, 843, 856, 913
AoxI	GGCC	1 cut(s)	591
ApeKI	GCWGC	1 cut(s)	108
ApoI	RAATTY	3 cut(s)	376, 814, 927
Asp718I	GGTACC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	208
AsuC2I	CCSGG	1 cut(s)	846
AsuHPI	GGTGA	2 cut(s)	270, 892
AvaII	GGWCC	1 cut(s)	208
BaeI	ACNNNNGTAYC	2 cut(s)	269, 302
BamHI	GGATCC	1 cut(s)	848
BanI	GGYRCC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	606
BciT130I	CCWGG	5 cut(s)	212, 282, 362, 542, 923
BciVI	GTATCC	1 cut(s)	692
BcnI	CCSGG	1 cut(s)	846
BfaI	CTAG	3 cut(s)	105, 441, 654
BfuI	GTATCC	1 cut(s)	692
BglII	AGATCT	1 cut(s)	460
BisI	GCNGC	1 cut(s)	109
BlsI	GCNGC	1 cut(s)	110
Bme1390I	CCNGG	6 cut(s)	212, 282, 362, 542, 846, 923
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	2 cut(s)	287, 850
BmrFI	CCNGG	6 cut(s)	212, 282, 362, 542, 846, 923
BmsI	GCATC	1 cut(s)	878
BoxI	GACNNNNGTC	1 cut(s)	534
BpmI	CTGGAG	1 cut(s)	745
BpuEI	CTTGAG	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	846
BsaBI	GATNNNNATC	1 cut(s)	830
BsaJI	CCNNGG	3 cut(s)	281, 361, 541
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 739
Bse1I	ACTGG	3 cut(s)	20, 616, 707
Bse3DI	GCAATG	1 cut(s)	393
Bse8I	GATNNNNATC	1 cut(s)	830
BseBI	CCWGG	5 cut(s)	212, 282, 362, 542, 923
BseDI	CCNNGG	3 cut(s)	281, 361, 541
BseGI	GGATG	2 cut(s)	748, 841
BseJI	GATNNNNATC	1 cut(s)	830
BseLI	CCNNNNNNNGG	2 cut(s)	361, 739
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	2 cut(s)	420, 616
BseNI	ACTGG	3 cut(s)	20, 616, 707
BseRI	GAGGAG	1 cut(s)	91
BseXI	GCAGC	1 cut(s)	95
BshFI	GGCC	1 cut(s)	593
BshNI	GGYRCC	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	845
BslI	CCNNNNNNNGG	2 cut(s)	361, 739
BsnI	GGCC	1 cut(s)	593
Bsp143I	GATC	8 cut(s)	96, 460, 656, 825, 831, 848, 894, 918
BspACI	CCGC	2 cut(s)	289, 765
BspANI	GGCC	1 cut(s)	593
BspCNI	CTCAG	2 cut(s)	421, 615
BspLI	GGNNCC	2 cut(s)	287, 850
BspPI	GGATC	5 cut(s)	104, 826, 843, 856, 913
BspT107I	GGYRCC	1 cut(s)	285
BsrBI	CCGCTC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	393
BsrI	ACTGG	3 cut(s)	20, 616, 707
BssECI	CCNNGG	3 cut(s)	281, 361, 541
BssMI	GATC	8 cut(s)	96, 460, 656, 825, 831, 848, 894, 918
Bst2UI	CCWGG	5 cut(s)	212, 282, 362, 542, 923
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	1 cut(s)	603
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	3 cut(s)	242, 429, 602
BstEII	GGTNACC	1 cut(s)	880
BstF5I	GGATG	2 cut(s)	748, 841
BstKTI	GATC	8 cut(s)	99, 463, 659, 828, 834, 851, 897, 921
BstMBI	GATC	8 cut(s)	96, 460, 656, 825, 831, 848, 894, 918
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 395
BstNI	CCWGG	5 cut(s)	212, 282, 362, 542, 923
BstPAI	GACNNNNGTC	1 cut(s)	534
BstPI	GGTNACC	1 cut(s)	880
BstSCI	CCNGG	6 cut(s)	210, 280, 360, 540, 844, 921
BstV1I	GCAGC	1 cut(s)	95
BstX2I	RGATCY	3 cut(s)	96, 460, 848
BstYI	RGATCY	3 cut(s)	96, 460, 848
BsuI	GTATCC	1 cut(s)	692
BsuRI	GGCC	1 cut(s)	593
BtsCI	GGATG	2 cut(s)	748, 841
Cac8I	GCNNGC	1 cut(s)	516
Cfr13I	GGNCC	1 cut(s)	208
CsiI	ACCWGGT	1 cut(s)	210
Csp6I	GTAC	3 cut(s)	286, 632, 793
CspCI	CAANNNNNGTGG	2 cut(s)	849, 884
CviAII	CATG	3 cut(s)	330, 484, 511
CviQI	GTAC	3 cut(s)	286, 632, 793
DdeI	CTNAG	3 cut(s)	242, 429, 602
DpnI	GATC	8 cut(s)	98, 462, 658, 827, 833, 850, 896, 920
DpnII	GATC	8 cut(s)	96, 460, 656, 825, 831, 848, 894, 918
DraI	TTTAAA	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Eco47I	GGWCC	1 cut(s)	208
Eco57I	CTGAAG	2 cut(s)	550, 758
Eco91I	GGTNACC	1 cut(s)	880
EcoO65I	GGTNACC	1 cut(s)	880
EcoRII	CCWGG	5 cut(s)	210, 280, 360, 540, 921
EcoT22I	ATGCAT	1 cut(s)	119
FaeI	CATG	3 cut(s)	333, 487, 514
FalI	AAGNNNNNCTT	4 cut(s)	163, 195, 251, 283
FatI	CATG	3 cut(s)	329, 483, 510
FauI	CCCGC	1 cut(s)	758
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	109
FokI	GGATG	2 cut(s)	755, 828
Fsp4HI	GCNGC	1 cut(s)	109
FspBI	CTAG	3 cut(s)	105, 441, 654
GluI	GCNGC	1 cut(s)	109
GsuI	CTGGAG	1 cut(s)	745
HaeIII	GGCC	1 cut(s)	593
HapII	CCGG	1 cut(s)	845
Hin1II	CATG	3 cut(s)	333, 487, 514
HincII	GTYRAC	2 cut(s)	57, 217
HindII	GTYRAC	2 cut(s)	57, 217
HinfI	GANTC	3 cut(s)	4, 185, 662
HpaII	CCGG	1 cut(s)	845
HphI	GGTGA	2 cut(s)	270, 892
Hpy166II	GTNNAC	2 cut(s)	57, 217
Hpy188I	TCNGA	6 cut(s)	237, 430, 605, 621, 661, 813
Hpy188III	TCNNGA	9 cut(s)	8, 317, 346, 401, 654, 684, 800, 829, 903
Hpy8I	GTNNAC	2 cut(s)	57, 217
Hpy99I	CGWCG	1 cut(s)	540
HpyAV	CCTTC	4 cut(s)	481, 660, 733, 871
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4V	TGCA	9 cut(s)	36, 52, 90, 111, 117, 514, 712, 788, 891
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 395
HpyF3I	CTNAG	3 cut(s)	242, 429, 602
Hsp92II	CATG	3 cut(s)	333, 487, 514
KpnI	GGTACC	1 cut(s)	289
Kzo9I	GATC	8 cut(s)	96, 460, 656, 825, 831, 848, 894, 918
LmnI	GCTCC	2 cut(s)	313, 814
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	1 cut(s)	878
MabI	ACCWGGT	1 cut(s)	210
MaeI	CTAG	3 cut(s)	105, 441, 654
MaeIII	GTNAC	2 cut(s)	44, 880
MalI	GATC	8 cut(s)	98, 462, 658, 827, 833, 850, 896, 920
MbiI	CCGCTC	1 cut(s)	291
MboI	GATC	8 cut(s)	96, 460, 656, 825, 831, 848, 894, 918
MboII	GAAGA	6 cut(s)	332, 590, 618, 669, 832, 835
MflI	RGATCY	3 cut(s)	96, 460, 848
MluCI	AATT	8 cut(s)	125, 368, 376, 421, 707, 777, 814, 927
MlyI	GAGTC	2 cut(s)	194, 656
MnlI	CCTC	5 cut(s)	112, 424, 604, 728, 767
Mph1103I	ATGCAT	1 cut(s)	119
MseI	TTAA	7 cut(s)	120, 144, 153, 222, 252, 326, 380
MslI	CAYNNNNRTG	1 cut(s)	914
MspA1I	CMGCKG	2 cut(s)	736, 765
MspI	CCGG	1 cut(s)	845
MspR9I	CCNGG	6 cut(s)	212, 282, 362, 542, 846, 923
MvaI	CCWGG	5 cut(s)	212, 282, 362, 542, 923
MwoI	GCNNNNNNNGC	2 cut(s)	114, 395
NciI	CCSGG	1 cut(s)	846
NdeII	GATC	8 cut(s)	96, 460, 656, 825, 831, 848, 894, 918
NlaIII	CATG	3 cut(s)	333, 487, 514
NlaIV	GGNNCC	2 cut(s)	287, 850
NmuCI	GTSAC	1 cut(s)	880
NsiI	ATGCAT	1 cut(s)	119
PflFI	GACNNNGTC	1 cut(s)	212
PflMI	CCANNNNNTGG	1 cut(s)	361
PfoI	TCCNGGA	2 cut(s)	844, 921
PkrI	GCNGC	1 cut(s)	110
PleI	GAGTC	2 cut(s)	193, 656
PpsI	GAGTC	2 cut(s)	193, 656
PshAI	GACNNNNGTC	1 cut(s)	534
Psp6I	CCWGG	5 cut(s)	210, 280, 360, 540, 921
PspEI	GGTNACC	1 cut(s)	880
PspGI	CCWGG	5 cut(s)	210, 280, 360, 540, 921
PspN4I	GGNNCC	2 cut(s)	287, 850
PspPI	GGNCC	1 cut(s)	208
PsuI	RGATCY	3 cut(s)	96, 460, 848
PsyI	GACNNNGTC	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	736
RsaI	GTAC	3 cut(s)	287, 633, 794
RsaNI	GTAC	3 cut(s)	286, 632, 793
RseI	CAYNNNNRTG	1 cut(s)	914
SalI	GTCGAC	1 cut(s)	215
SaqAI	TTAA	7 cut(s)	120, 144, 153, 222, 252, 326, 380
SatI	GCNGC	1 cut(s)	109
Sau3AI	GATC	8 cut(s)	96, 460, 656, 825, 831, 848, 894, 918
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	2 cut(s)	194, 656
ScrFI	CCNGG	6 cut(s)	212, 282, 362, 542, 846, 923
SexAI	ACCWGGT	1 cut(s)	210
SfaNI	GCATC	1 cut(s)	878
SinI	GGWCC	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	914
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	8 cut(s)	125, 368, 376, 421, 707, 777, 814, 927
SsiI	CCGC	2 cut(s)	289, 765
SspI	AATATT	1 cut(s)	160
SspMI	CTAG	3 cut(s)	105, 441, 654
StyD4I	CCNGG	6 cut(s)	210, 280, 360, 540, 844, 921
TaaI	ACNGT	1 cut(s)	412
TaqI	TCGA	4 cut(s)	216, 296, 801, 902
TasI	AATT	8 cut(s)	125, 368, 376, 421, 707, 777, 814, 927
TatI	WGTACW	1 cut(s)	792
Tru1I	TTAA	7 cut(s)	120, 144, 153, 222, 252, 326, 380
Tru9I	TTAA	7 cut(s)	120, 144, 153, 222, 252, 326, 380
TseFI	GTSAC	1 cut(s)	880
TseI	GCWGC	1 cut(s)	108
Tsp45I	GTSAC	1 cut(s)	880
TspDTI	ATGAA	7 cut(s)	93, 382, 499, 500, 669, 715, 789
TspGWI	ACGGA	2 cut(s)	32, 824
Tth111I	GACNNNGTC	1 cut(s)	212
Van91I	CCANNNNNTGG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	208
XapI	RAATTY	3 cut(s)	376, 814, 927
XbaI	TCTAGA	1 cut(s)	653
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	3 cut(s)	105, 441, 654
Zsp2I	ATGCAT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.