Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004213

Physical Location & Seq

Genomic Coordinates Forward (+)

5193149 .. 5195740

Gene Structure 2592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g04740.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGATGTCGTGCAAGAAGTTATGGTCAGACAGATTTAGTGATCTTCCAGACGAAGTTGCTCACCATATTCTGTCCTTCCTCTTTGTCAAAGATCTCGCTTGTGTAGGTGCTGTGTCGAAAAGATGCAGAGAATTTTACCTCTCAGTTCCATTAGTGAATCTTGCAAATTGTTATGCAGGAGGAAACTACCAGAAGCTTGGAGAACTCATGTGTTTCTTGGATAGATACATGTTTCAGCGTGGTGATAATAAGATGCAGCGCTTTTACATTAATTGGATATTCCATACACTCGGCGTTGCAAATAAAGACTGCGAGGAGTTATATCGAATAACCTCGTGGATTCATAACGCAGTAAGGTGTAATGTTGAAGAGCTTAACCTTCGTTTCTCCTCAACATATGCTGGATTCACGTTTGGGCTGCCCTCTTGCCTATATCAGTCGAAATCATTCCAGACTCTAGTATTAGTATGCTTGAATGAGATGACTCTGGAAGCACCACCATTATCTCTTTCCTGCAATCTCCATTACTTGCATTTGAATTCTGTAACAATAGTAGATGATCAAAGGCTTTGCAAGTGGATCTCCTATAGCTGCAAATGCATTAAGAAATTACACCTTATTAATGTTAAAGGGCTGAAGCATATTGTCATTCTAAGCTCGTCATTGGAATCATTTGAGTTTTCTGGTACGGACCTGATCACGCTTTACATCTCTGGTGAAAAGCTTGCAAGCATTTCCATCAACTGGAACTTTAATTCTTTCCCTGGGAACTGCTCACTGAAGATTTCTGCTCCAAATCTGCGAAAACTGACATGGGTGGGCAAGGTCTTGAATACCCTTGATCTGGGAAAATTTCTGAATTTGCAAACAGCTCAAATTTTTCTTGAGCCTACGGTATACCACAATTTATCTGAGGTCTTTTCCAGTATCTGTGGGACTAAAGTTCTTGGTCTAAATGAGAACACCATGAAGGCAATGTTCAAAGGATGTTCCATGCAAACACCATTGCCCATTCTTGTACTGACTGTTTATCTTACGAGCTTCAGTAACGACACGGTTCCCATAGCGGCCTCTCTTCTCAGAAGGACTGGTCTTCTGCTCAGCTTGACCATAAGTTCTAATTCACCTATTGGGGACCCTAAAACTATATCACAGTCTTCATCTGGATTTGATAAGGAATACTGGGAATCGCAAAACTTAGCTTTTGTTAACCACCTGAAGGTTTTGAGCATAGACCTCTCCAGTGGGTCTAATGAGATTGAGTTTGCAAAGTACATTCTCGAAAATGCTCCGAATTTGAAGAAGATTGTTATTCGGTATCGTCCGGGATTCCAGCAATCAGATACCTTGCAACGGAAGATGATCAGATGCAAGAACATTGCCTCGAGAGTCATGGTTATGATTCACGAGATCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

473

Amino Acids

53.52

Weight (kDa)

8.91

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	77 - 442	1.5e-09	At1g61320/AtMIF1, LRR domain
FBD	PF08387	380 - 414	1.8e-06	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004213)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16170 FvH4_6g18953 FvH4_7g04740 FvH4_7g04740
malus_domestica	MD02G1269000.v1.1 MD04G1145300.v1.1 MD04G1145500.v1.1 MD04G1145600.v1.1 MD04G1145900.v1.1 MD12G1159100.v1.1
prunus_persica	Prupe.2G052100_v2.0.a1 Prupe.7G105700_v2.0.a1 Prupe.7G106400_v2.0.a1
pyrus_communis	pycom04g13150
rosa_chinensis	RchiOBHm_Chr1g0330111
rosa_laevigata	RLG00000029830
rosa_multiflora	Rmu_sc0004673.1_g000009
rosa_roxburghii	Rroxscaffold_4G00320200 Rroxscaffold_4G00320300 Rroxscaffold_4G00320320 Rroxscaffold_4G00320330
rosa_rugosa	Rorug01G0086000 Rorug01G0086100 Rorug01G0086200 Rorug02G0131100 Rorug03G0137300
rosa_samantha	Rh1AG104600 Rh1AG104700 Rh1BG082800 Rh1CG100200 Rh1DG107500 Rh1DG108500
rosa_wichuraiana	Rw0G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	744
AccI	GTMKAC	1 cut(s)	897
AciI	CCGC	1 cut(s)	1067
AclWI	GGATC	2 cut(s)	587, 1405
AcsI	RAATTY	6 cut(s)	131, 538, 851, 859, 876, 1294
AcuI	CTGAAG	4 cut(s)	656, 800, 1027, 1238
AfaI	GTAC	3 cut(s)	688, 1020, 1274
AfeI	AGCGCT	1 cut(s)	260
AfiI	CCNNNNNNNGG	4 cut(s)	744, 844, 1219, 1353
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	6 cut(s)	368, 475, 538, 832, 982, 1300
AjnI	CCWGG	1 cut(s)	763
AluBI	AGCT	9 cut(s)	196, 373, 591, 657, 724, 872, 1041, 1104, 1202
AluI	AGCT	9 cut(s)	196, 373, 591, 657, 724, 872, 1041, 1104, 1202
AlwI	GGATC	2 cut(s)	587, 1405
AlwNI	CAGNNNCTG	1 cut(s)	930
Ama87I	CYCGRG	1 cut(s)	1384
Aor51HI	AGCGCT	1 cut(s)	260
AoxI	GGCC	1 cut(s)	1068
ApeKI	GCWGC	3 cut(s)	256, 418, 591
ApoI	RAATTY	6 cut(s)	131, 538, 851, 859, 876, 1294
AseI	ATTAAT	2 cut(s)	270, 621
Asp700I	GAANNNNTTC	1 cut(s)	446
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	2 cut(s)	691, 1135
AsuC2I	CCSGG	1 cut(s)	1326
AsuHPI	GGTGA	4 cut(s)	53, 254, 728, 1116
AvaI	CYCGRG	1 cut(s)	1384
AvaII	GGWCC	2 cut(s)	691, 1135
BauI	CACGAG	2 cut(s)	334, 1406
BbsI	GAAGAC	2 cut(s)	1085, 1149
BbvI	GCAGC	3 cut(s)	268, 405, 578
BccI	CCATC	1 cut(s)	746
BciT130I	CCWGG	1 cut(s)	765
BclI	TGATCA	3 cut(s)	559, 696, 1362
BcnI	CCSGG	1 cut(s)	1326
BfaI	CTAG	1 cut(s)	458
BfmI	CTRYAG	1 cut(s)	586
BfoI	RGCGCY	1 cut(s)	262
BglII	AGATCT	1 cut(s)	91
BisI	GCNGC	4 cut(s)	257, 419, 592, 1068
BlpI	GCTNAGC	1 cut(s)	1100
BlsI	GCNGC	4 cut(s)	258, 420, 593, 1069
Bme1390I	CCNGG	2 cut(s)	765, 1326
Bme18I	GGWCC	2 cut(s)	691, 1135
BmeT110I	CYCGRG	1 cut(s)	1384
BmgT120I	GGNCC	2 cut(s)	691, 1135
BmiI	GGNNCC	3 cut(s)	1059, 1136, 1137
BmrFI	CCNGG	2 cut(s)	765, 1326
BmrI	ACTGGG	1 cut(s)	1192
BmsI	GCATC	3 cut(s)	113, 243, 1358
BmuI	ACTGGG	1 cut(s)	1192
BpiI	GAAGAC	2 cut(s)	1085, 1149
BpmI	CTGGAG	1 cut(s)	1225
Bpu1102I	GCTNAGC	1 cut(s)	1100
BpuEI	CTTGAG	1 cut(s)	905
BpuMI	CCSGG	1 cut(s)	1326
BsaJI	CCNNGG	2 cut(s)	763, 764
BsaWI	WCCGGW	1 cut(s)	1413
Bsc4I	CCNNNNNNNGG	4 cut(s)	744, 844, 1219, 1353
Bse1I	ACTGG	5 cut(s)	749, 924, 1093, 1187, 1242
Bse3DI	GCAATG	3 cut(s)	981, 1004, 1377
BseBI	CCWGG	1 cut(s)	765
BseDI	CCNNGG	2 cut(s)	763, 764
BseGI	GGATG	1 cut(s)	992
BseLI	CCNNNNNNNGG	4 cut(s)	744, 844, 1219, 1353
BseMI	GCAATG	3 cut(s)	981, 1004, 1377
BseMII	CTCAG	4 cut(s)	156, 903, 1093, 1114
BseNI	ACTGG	5 cut(s)	749, 924, 1093, 1187, 1242
BseRI	GAGGAG	2 cut(s)	329, 379
BseXI	GCAGC	3 cut(s)	268, 405, 578
BshFI	GGCC	1 cut(s)	1070
BsiHKCI	CYCGRG	1 cut(s)	1384
BsiSI	CCGG	2 cut(s)	1325, 1414
BslFI	GGGAC	2 cut(s)	949, 1148
BslI	CCNNNNNNNGG	4 cut(s)	744, 844, 1219, 1353
BsmFI	GGGAC	2 cut(s)	949, 1148
BsnI	GGCC	1 cut(s)	1070
BsoBI	CYCGRG	1 cut(s)	1384
Bsp143I	GATC	8 cut(s)	40, 91, 559, 579, 696, 841, 1362, 1410
Bsp1720I	GCTNAGC	1 cut(s)	1100
BspACI	CCGC	1 cut(s)	1067
BspANI	GGCC	1 cut(s)	1070
BspCNI	CTCAG	4 cut(s)	155, 904, 1092, 1113
BspLI	GGNNCC	3 cut(s)	1059, 1136, 1137
BspPI	GGATC	2 cut(s)	587, 1405
BspQI	GCTCTTC	1 cut(s)	363
BsrDI	GCAATG	3 cut(s)	981, 1004, 1377
BsrI	ACTGG	5 cut(s)	749, 924, 1093, 1187, 1242
BssECI	CCNNGG	2 cut(s)	763, 764
BssMI	GATC	8 cut(s)	40, 91, 559, 579, 696, 841, 1362, 1410
BssNAI	GTATAC	1 cut(s)	898
BssSI	CACGAG	2 cut(s)	334, 1406
Bst1107I	GTATAC	1 cut(s)	898
Bst2BI	CACGAG	2 cut(s)	334, 1406
Bst2UI	CCWGG	1 cut(s)	765
Bst4CI	ACNGT	4 cut(s)	895, 1027, 1057, 1155
Bst6I	CTCTTC	2 cut(s)	363, 1080
BstC8I	GCNNGC	2 cut(s)	726, 730
BstDEI	CTNAG	6 cut(s)	142, 653, 912, 1079, 1100, 1198
BstF5I	GGATG	1 cut(s)	992
BstH2I	RGCGCY	1 cut(s)	262
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	8 cut(s)	43, 94, 562, 582, 699, 844, 1365, 1413
BstMBI	GATC	8 cut(s)	40, 91, 559, 579, 696, 841, 1362, 1410
BstMWI	GCNNNNNNNGC	1 cut(s)	597
BstNI	CCWGG	1 cut(s)	765
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	2 cut(s)	763, 1324
BstSFI	CTRYAG	1 cut(s)	586
BstV1I	GCAGC	3 cut(s)	268, 405, 578
BstV2I	GAAGAC	2 cut(s)	1085, 1149
BstX2I	RGATCY	3 cut(s)	91, 579, 1410
BstXI	CCANNNNNNTGG	1 cut(s)	197
BstYI	RGATCY	3 cut(s)	91, 579, 1410
BstZ17I	GTATAC	1 cut(s)	898
BsuRI	GGCC	1 cut(s)	1070
BtsCI	GGATG	1 cut(s)	992
BtsIMutI	CAGTG	2 cut(s)	776, 1249
Cac8I	GCNNGC	2 cut(s)	726, 730
CaiI	CAGNNNCTG	1 cut(s)	930
CfoI	GCGC	1 cut(s)	261
Cfr13I	GGNCC	2 cut(s)	691, 1135
Csp6I	GTAC	3 cut(s)	687, 1019, 1273
CviAII	CATG	6 cut(s)	208, 229, 813, 967, 994, 1393
CviQI	GTAC	3 cut(s)	687, 1019, 1273
DdeI	CTNAG	6 cut(s)	142, 653, 912, 1079, 1100, 1198
DpnI	GATC	8 cut(s)	42, 93, 561, 581, 698, 843, 1364, 1412
DpnII	GATC	8 cut(s)	40, 91, 559, 579, 696, 841, 1362, 1410
Eam1104I	CTCTTC	2 cut(s)	363, 1080
EarI	CTCTTC	2 cut(s)	363, 1080
Eco47I	GGWCC	2 cut(s)	691, 1135
Eco47III	AGCGCT	1 cut(s)	260
Eco57I	CTGAAG	4 cut(s)	656, 800, 1027, 1238
Eco88I	CYCGRG	1 cut(s)	1384
EcoO109I	RGGNCCY	1 cut(s)	1135
EcoRI	GAATTC	1 cut(s)	538
EcoRII	CCWGG	1 cut(s)	763
EcoT22I	ATGCAT	1 cut(s)	602
FaeI	CATG	6 cut(s)	211, 232, 816, 970, 997, 1396
FaqI	GGGAC	2 cut(s)	949, 1148
FatI	CATG	6 cut(s)	207, 228, 812, 966, 993, 1392
FauNDI	CATATG	1 cut(s)	397
FbaI	TGATCA	3 cut(s)	559, 696, 1362
FblI	GTMKAC	1 cut(s)	897
Fnu4HI	GCNGC	4 cut(s)	257, 419, 592, 1068
FokI	GGATG	1 cut(s)	999
Fsp4HI	GCNGC	4 cut(s)	257, 419, 592, 1068
FspBI	CTAG	1 cut(s)	458
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	4 cut(s)	257, 419, 592, 1068
GsuI	CTGGAG	1 cut(s)	1225
HaeII	RGCGCY	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	1070
HapII	CCGG	2 cut(s)	1325, 1414
HhaI	GCGC	1 cut(s)	261
Hin1II	CATG	6 cut(s)	211, 232, 816, 970, 997, 1396
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HincII	GTYRAC	1 cut(s)	1210
HindII	GTYRAC	1 cut(s)	1210
HindIII	AAGCTT	2 cut(s)	194, 722
HpaI	GTTAAC	1 cut(s)	1210
HpaII	CCGG	2 cut(s)	1325, 1414
HphI	GGTGA	4 cut(s)	53, 254, 728, 1116
Hpy166II	GTNNAC	2 cut(s)	898, 1210
Hpy188I	TCNGA	7 cut(s)	28, 858, 913, 1082, 1293, 1342, 1367
Hpy188III	TCNNGA	9 cut(s)	47, 451, 488, 829, 884, 1164, 1280, 1386, 1406
Hpy8I	GTNNAC	2 cut(s)	898, 1210
HpyAV	CCTTC	5 cut(s)	85, 389, 964, 1077, 1213
HpyCH4III	ACNGT	4 cut(s)	895, 1027, 1057, 1155
HpyCH4IV	ACGT	1 cut(s)	410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	597
HpyF3I	CTNAG	6 cut(s)	142, 653, 912, 1079, 1100, 1198
HpySE526I	ACGT	1 cut(s)	410
Hsp92II	CATG	6 cut(s)	211, 232, 816, 970, 997, 1396
HspAI	GCGC	1 cut(s)	259
KflI	GGGWCCC	1 cut(s)	1135
Ksp22I	TGATCA	3 cut(s)	559, 696, 1362
KspAI	GTTAAC	1 cut(s)	1210
Kzo9I	GATC	8 cut(s)	40, 91, 559, 579, 696, 841, 1362, 1410
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	2 cut(s)	796, 1294
Lsp1109I	GCAGC	3 cut(s)	268, 405, 578
LweI	GCATC	3 cut(s)	113, 243, 1358
MaeI	CTAG	1 cut(s)	458
MaeII	ACGT	1 cut(s)	410
MaeIII	GTNAC	2 cut(s)	544, 1046
MalI	GATC	8 cut(s)	42, 93, 561, 581, 698, 843, 1364, 1412
MboI	GATC	8 cut(s)	40, 91, 559, 579, 696, 841, 1362, 1410
MboII	GAAGA	9 cut(s)	35, 380, 793, 1067, 1085, 1149, 1312, 1315, 1369
MflI	RGATCY	3 cut(s)	91, 579, 1410
MlyI	GAGTC	3 cut(s)	448, 478, 1398
Mph1103I	ATGCAT	1 cut(s)	602
MroXI	GAANNNNTTC	1 cut(s)	446
MseI	TTAA	7 cut(s)	270, 375, 603, 621, 627, 753, 1209
MslI	CAYNNNNRTG	1 cut(s)	1397
MspI	CCGG	2 cut(s)	1325, 1414
MspR9I	CCNGG	2 cut(s)	765, 1326
MvaI	CCWGG	1 cut(s)	765
MwoI	GCNNNNNNNGC	1 cut(s)	597
NciI	CCSGG	1 cut(s)	1326
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	8 cut(s)	40, 91, 559, 579, 696, 841, 1362, 1410
NlaIII	CATG	6 cut(s)	211, 232, 816, 970, 997, 1396
NlaIV	GGNNCC	3 cut(s)	1059, 1136, 1137
NmeAIII	GCCGAG	1 cut(s)	270
NsiI	ATGCAT	1 cut(s)	602
NspI	RCATGY	1 cut(s)	232
PaeR7I	CTCGAG	1 cut(s)	1384
PasI	CCCWGGG	1 cut(s)	764
PciI	ACATGT	1 cut(s)	228
PciSI	GCTCTTC	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	446
PfeI	GAWTC	7 cut(s)	157, 340, 405, 668, 1187, 1329, 1402
PflMI	CCANNNNNTGG	1 cut(s)	744
PfoI	TCCNGGA	1 cut(s)	1324
PkrI	GCNGC	4 cut(s)	258, 420, 593, 1069
PleI	GAGTC	3 cut(s)	448, 478, 1397
PpsI	GAGTC	3 cut(s)	448, 478, 1397
PpuMI	RGGWCCY	1 cut(s)	1135
PscI	ACATGT	1 cut(s)	228
PshBI	ATTAAT	2 cut(s)	270, 621
Psp5II	RGGWCCY	1 cut(s)	1135
Psp6I	CCWGG	1 cut(s)	763
PspGI	CCWGG	1 cut(s)	763
PspN4I	GGNNCC	3 cut(s)	1059, 1136, 1137
PspPI	GGNCC	2 cut(s)	691, 1135
PspPPI	RGGWCCY	1 cut(s)	1135
PstNI	CAGNNNCTG	1 cut(s)	930
PsuI	RGATCY	3 cut(s)	91, 579, 1410
RsaI	GTAC	3 cut(s)	688, 1020, 1274
RsaNI	GTAC	3 cut(s)	687, 1019, 1273
RseI	CAYNNNNRTG	1 cut(s)	1397
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	7 cut(s)	270, 375, 603, 621, 627, 753, 1209
SatI	GCNGC	4 cut(s)	257, 419, 592, 1068
Sau3AI	GATC	8 cut(s)	40, 91, 559, 579, 696, 841, 1362, 1410
Sau96I	GGNCC	2 cut(s)	691, 1135
SchI	GAGTC	3 cut(s)	448, 478, 1398
ScrFI	CCNGG	2 cut(s)	765, 1326
SfaNI	GCATC	3 cut(s)	113, 243, 1358
SfcI	CTRYAG	1 cut(s)	586
Sfr274I	CTCGAG	1 cut(s)	1384
SinI	GGWCC	2 cut(s)	691, 1135
SlaI	CTCGAG	1 cut(s)	1384
SmiMI	CAYNNNNRTG	1 cut(s)	1397
SmlI	CTYRAG	2 cut(s)	884, 1384
SmoI	CTYRAG	2 cut(s)	884, 1384
SsiI	CCGC	1 cut(s)	1067
SspMI	CTAG	1 cut(s)	458
StyD4I	CCNGG	2 cut(s)	763, 1324
TaaI	ACNGT	4 cut(s)	895, 1027, 1057, 1155
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	5 cut(s)	116, 325, 440, 1281, 1385
TatI	WGTACW	2 cut(s)	1018, 1272
TauI	GCSGC	1 cut(s)	1070
TfiI	GAWTC	7 cut(s)	157, 340, 405, 668, 1187, 1329, 1402
Tru1I	TTAA	7 cut(s)	270, 375, 603, 621, 627, 753, 1209
Tru9I	TTAA	7 cut(s)	270, 375, 603, 621, 627, 753, 1209
TscAI	CASTG	2 cut(s)	783, 1249
TseI	GCWGC	3 cut(s)	256, 418, 591
TspDTI	ATGAA	3 cut(s)	332, 983, 1149
TspGWI	ACGGA	2 cut(s)	704, 1369
TspRI	CASTG	2 cut(s)	783, 1249
Van91I	CCANNNNNTGG	1 cut(s)	744
VpaK11BI	GGWCC	2 cut(s)	691, 1135
VspI	ATTAAT	2 cut(s)	270, 621
XapI	RAATTY	6 cut(s)	131, 538, 851, 859, 876, 1294
XceI	RCATGY	1 cut(s)	232
XhoI	CTCGAG	1 cut(s)	1384
XmiI	GTMKAC	1 cut(s)	897
XmnI	GAANNNNTTC	1 cut(s)	446
XspI	CTAG	1 cut(s)	458
Zsp2I	ATGCAT	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.