Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004213

Physical Location & Seq

Genomic Coordinates Reverse (-)

49955346 .. 49957256

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029830

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGATGCTGTGCAAGAAGTTATGGTCAGACAGATTTAGTAATCTTCCGGACGAAGTTGCTCATCATATTCTTTCCTTCCTCGGTGTCAGAGATCTCGCTTCTGTAGGTGCTGTGTCCAAAAGATGCAGAGAATTTTATCTCTCAGTTCCATCAGTGAATCTTGATGCAAGTTGTTATCTAAAAACCAGCCGCAATTTACCAGGGCTGATGTGTTTCTGGGATAGGTACATGTTTCAGCGTGGTGTTAATAAGATGCAACGCTTTTACATTAATTGGACTTTCTTCTCACGCGGAGTAAATAAAGGCATTGAGGAGGTGGAGGAGAAATATCGAATAATCTCATGGATTCATAACGCAGTAAGGTGTAATGTTGAAGAGCTTAACCTTAATTTCACAGCATGTGGTGGATTCACGTTTGTATTGCCGTCTTGCCTATATCAGTCACAATCTTTCAAGTCTCTAGTATTAAAATGCTGGAATGAGATGACTCTTGAAGCACCACCAGCTTTCAAAGAATGTTCCATGCAAGCCCCATTAGACATTCTTCGCCTGGTTATTGCACTTACGAGCTTCAGTAATGACTTAGTTCCAATAACGGCCTCTCTTCTCAGAAGAACTGGTTATCTGAATAGCTTGTCTTCATCTGGATTTGATATGGGATACTGGAAATTGCAAAACCTCACTTTCATTTACCAGCTGAAGGATGTGAGCATAGACCTCTCCAGCGGGTCTAATGAAATTGAGTTTGCAAAGTACATTCTCGAGAATGCTCCGAATTTGAAGAAGATCGTGATCCGTCATCATCCGGGATCCCAACAATCAAATATCGTAGTAGGGAAGGTGACCAGATGCAAGATCATTTCGAGAGCCATTATTGTGATCCAGGAAATTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

299

Amino Acids

34.14

Weight (kDa)

9.13

Isoelectric Point (pI)

52.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	12 - 44	6.5e-08	F-box-like
F-box	PF00646	12 - 44	1.1e-06	F-box domain
FBD	PF08387	244 - 265	6.1e-06	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004213)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16170 FvH4_6g18953 FvH4_7g04740 FvH4_7g04740
malus_domestica	MD02G1269000.v1.1 MD04G1145300.v1.1 MD04G1145500.v1.1 MD04G1145600.v1.1 MD04G1145900.v1.1 MD12G1159100.v1.1
prunus_persica	Prupe.2G052100_v2.0.a1 Prupe.7G105700_v2.0.a1 Prupe.7G106400_v2.0.a1
pyrus_communis	pycom04g13150
rosa_chinensis	RchiOBHm_Chr1g0330111
rosa_laevigata	RLG00000029830
rosa_multiflora	Rmu_sc0004673.1_g000009
rosa_roxburghii	Rroxscaffold_4G00320200 Rroxscaffold_4G00320300 Rroxscaffold_4G00320320 Rroxscaffold_4G00320330
rosa_rugosa	Rorug01G0086000 Rorug01G0086100 Rorug01G0086200 Rorug02G0131100 Rorug03G0137300
rosa_samantha	Rh1AG104600 Rh1AG104700 Rh1BG082800 Rh1CG100200 Rh1DG107500 Rh1DG108500
rosa_wichuraiana	Rw0G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	291
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	3 cut(s)	190, 291, 726
AclWI	GGATC	4 cut(s)	787, 804, 817, 874
AcsI	RAATTY	3 cut(s)	131, 775, 888
AcuI	CTGAAG	2 cut(s)	556, 719
AfaI	GTAC	2 cut(s)	227, 755
AfiI	CCNNNNNNNGG	1 cut(s)	700
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	5 cut(s)	374, 454, 494, 511, 781
AjnI	CCWGG	3 cut(s)	199, 549, 882
AluBI	AGCT	5 cut(s)	379, 506, 570, 633, 697
AluI	AGCT	5 cut(s)	379, 506, 570, 633, 697
Alw26I	GTCTC	1 cut(s)	462
AlwI	GGATC	4 cut(s)	787, 804, 817, 874
Ama87I	CYCGRG	1 cut(s)	761
Aor13HI	TCCGGA	1 cut(s)	46
AoxI	GGCC	1 cut(s)	597
ApoI	RAATTY	3 cut(s)	131, 775, 888
AseI	ATTAAT	1 cut(s)	270
AsuC2I	CCSGG	1 cut(s)	807
AsuHPI	GGTGA	1 cut(s)	853
AvaI	CYCGRG	1 cut(s)	761
BamHI	GGATCC	1 cut(s)	809
BbsI	GAAGAC	1 cut(s)	630
BccI	CCATC	1 cut(s)	157
BceAI	ACGGC	2 cut(s)	409, 612
BciT130I	CCWGG	3 cut(s)	201, 551, 884
BciVI	GTATCC	1 cut(s)	653
BcnI	CCSGG	1 cut(s)	807
BcoDI	GTCTC	1 cut(s)	462
BfaI	CTAG	1 cut(s)	461
BfmI	CTRYAG	1 cut(s)	102
BfuI	GTATCC	1 cut(s)	653
BglII	AGATCT	1 cut(s)	91
BisI	GCNGC	1 cut(s)	190
BlsI	GCNGC	1 cut(s)	191
Bme1390I	CCNGG	4 cut(s)	201, 551, 807, 884
BmeT110I	CYCGRG	1 cut(s)	761
BmiI	GGNNCC	1 cut(s)	811
BmrFI	CCNGG	4 cut(s)	201, 551, 807, 884
BmsI	GCATC	4 cut(s)	113, 154, 243, 839
BpiI	GAAGAC	1 cut(s)	630
BpmI	CTGGAG	1 cut(s)	706
BpuMI	CCSGG	1 cut(s)	807
BsaBI	GATNNNNATC	1 cut(s)	791
BsaJI	CCNNGG	2 cut(s)	79, 200
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	1 cut(s)	700
Bse1I	ACTGG	2 cut(s)	622, 668
Bse8I	GATNNNNATC	1 cut(s)	791
BseAI	TCCGGA	1 cut(s)	46
BseBI	CCWGG	3 cut(s)	201, 551, 884
BseDI	CCNNGG	2 cut(s)	79, 200
BseGI	GGATG	2 cut(s)	709, 802
BseJI	GATNNNNATC	1 cut(s)	791
BseLI	CCNNNNNNNGG	1 cut(s)	700
BseMII	CTCAG	2 cut(s)	156, 622
BseNI	ACTGG	2 cut(s)	622, 668
BseRI	GAGGAG	2 cut(s)	326, 335
Bsh1236I	CGCG	1 cut(s)	291
BshFI	GGCC	1 cut(s)	599
BsiHKCI	CYCGRG	1 cut(s)	761
BsiSI	CCGG	2 cut(s)	47, 806
BslI	CCNNNNNNNGG	1 cut(s)	700
BsmAI	GTCTC	1 cut(s)	462
BsmI	GAATGC	1 cut(s)	772
BsnI	GGCC	1 cut(s)	599
BsoBI	CYCGRG	1 cut(s)	761
Bsp13I	TCCGGA	1 cut(s)	46
Bsp143I	GATC	6 cut(s)	91, 786, 792, 809, 855, 879
BspACI	CCGC	3 cut(s)	190, 291, 726
BspANI	GGCC	1 cut(s)	599
BspCNI	CTCAG	2 cut(s)	155, 621
BspEI	TCCGGA	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	1 cut(s)	811
BspPI	GGATC	4 cut(s)	787, 804, 817, 874
BspQI	GCTCTTC	1 cut(s)	369
BsrI	ACTGG	2 cut(s)	622, 668
BssECI	CCNNGG	2 cut(s)	79, 200
BssMI	GATC	6 cut(s)	91, 786, 792, 809, 855, 879
Bst2UI	CCWGG	3 cut(s)	201, 551, 884
Bst6I	CTCTTC	2 cut(s)	369, 609
BstC8I	GCNNGC	1 cut(s)	528
BstDEI	CTNAG	3 cut(s)	142, 583, 608
BstEII	GGTNACC	1 cut(s)	841
BstF5I	GGATG	2 cut(s)	709, 802
BstFNI	CGCG	1 cut(s)	291
BstKTI	GATC	6 cut(s)	94, 789, 795, 812, 858, 882
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	6 cut(s)	91, 786, 792, 809, 855, 879
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstNI	CCWGG	3 cut(s)	201, 551, 884
BstNSI	RCATGY	2 cut(s)	232, 402
BstPI	GGTNACC	1 cut(s)	841
BstSCI	CCNGG	4 cut(s)	199, 549, 805, 882
BstSFI	CTRYAG	1 cut(s)	102
BstUI	CGCG	1 cut(s)	291
BstV2I	GAAGAC	1 cut(s)	630
BstX2I	RGATCY	2 cut(s)	91, 809
BstYI	RGATCY	2 cut(s)	91, 809
BsuI	GTATCC	1 cut(s)	653
BsuRI	GGCC	1 cut(s)	599
BtsCI	GGATG	2 cut(s)	709, 802
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	528
Csp6I	GTAC	2 cut(s)	226, 754
CviAII	CATG	4 cut(s)	229, 342, 399, 523
CviQI	GTAC	2 cut(s)	226, 754
DdeI	CTNAG	3 cut(s)	142, 583, 608
DpnI	GATC	6 cut(s)	93, 788, 794, 811, 857, 881
DpnII	GATC	6 cut(s)	91, 786, 792, 809, 855, 879
Eam1104I	CTCTTC	2 cut(s)	369, 609
EarI	CTCTTC	2 cut(s)	369, 609
Eco57I	CTGAAG	2 cut(s)	556, 719
Eco88I	CYCGRG	1 cut(s)	761
Eco91I	GGTNACC	1 cut(s)	841
EcoO65I	GGTNACC	1 cut(s)	841
EcoRII	CCWGG	3 cut(s)	199, 549, 882
FaeI	CATG	4 cut(s)	232, 345, 402, 526
FatI	CATG	4 cut(s)	228, 341, 398, 522
FauI	CCCGC	1 cut(s)	719
Fnu4HI	GCNGC	1 cut(s)	190
FokI	GGATG	2 cut(s)	716, 789
Fsp4HI	GCNGC	1 cut(s)	190
FspBI	CTAG	1 cut(s)	461
GluI	GCNGC	1 cut(s)	190
GsuI	CTGGAG	1 cut(s)	706
HaeIII	GGCC	1 cut(s)	599
HapII	CCGG	2 cut(s)	47, 806
Hin1II	CATG	4 cut(s)	232, 345, 402, 526
HinfI	GANTC	4 cut(s)	157, 346, 408, 487
HpaII	CCGG	2 cut(s)	47, 806
HphI	GGTGA	1 cut(s)	853
Hpy188I	TCNGA	5 cut(s)	28, 89, 611, 627, 774
Hpy188III	TCNNGA	8 cut(s)	47, 161, 491, 645, 761, 763, 790, 864
HpyAV	CCTTC	3 cut(s)	85, 694, 832
HpyCH4IV	ACGT	1 cut(s)	413
HpyCH4V	TGCA	9 cut(s)	12, 126, 167, 256, 526, 560, 673, 749, 852
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	3 cut(s)	142, 583, 608
HpySE526I	ACGT	1 cut(s)	413
Hsp92II	CATG	4 cut(s)	232, 345, 402, 526
Kpn2I	TCCGGA	1 cut(s)	46
Kzo9I	GATC	6 cut(s)	91, 786, 792, 809, 855, 879
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	1 cut(s)	775
LweI	GCATC	4 cut(s)	113, 154, 243, 839
MaeI	CTAG	1 cut(s)	461
MaeII	ACGT	1 cut(s)	413
MaeIII	GTNAC	2 cut(s)	441, 841
MalI	GATC	6 cut(s)	93, 788, 794, 811, 857, 881
MboI	GATC	6 cut(s)	91, 786, 792, 809, 855, 879
MboII	GAAGA	9 cut(s)	35, 274, 386, 536, 596, 624, 630, 793, 796
MflI	RGATCY	2 cut(s)	91, 809
MluCI	AATT	8 cut(s)	131, 193, 271, 388, 668, 738, 775, 888
MlyI	GAGTC	1 cut(s)	481
MnlI	CCTC	7 cut(s)	89, 304, 307, 313, 610, 689, 728
MroI	TCCGGA	1 cut(s)	46
MseI	TTAA	5 cut(s)	246, 270, 381, 387, 467
MslI	CAYNNNNRTG	1 cut(s)	875
MspA1I	CMGCKG	2 cut(s)	697, 726
MspI	CCGG	2 cut(s)	47, 806
MspR9I	CCNGG	4 cut(s)	201, 551, 807, 884
Mva1269I	GAATGC	1 cut(s)	772
MvaI	CCWGG	3 cut(s)	201, 551, 884
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	503
NciI	CCSGG	1 cut(s)	807
NdeII	GATC	6 cut(s)	91, 786, 792, 809, 855, 879
NlaIII	CATG	4 cut(s)	232, 345, 402, 526
NlaIV	GGNNCC	1 cut(s)	811
NmuCI	GTSAC	2 cut(s)	441, 841
NspI	RCATGY	2 cut(s)	232, 402
PaeR7I	CTCGAG	1 cut(s)	761
PciI	ACATGT	1 cut(s)	228
PciSI	GCTCTTC	1 cut(s)	369
PctI	GAATGC	1 cut(s)	772
PfeI	GAWTC	3 cut(s)	157, 346, 408
PfoI	TCCNGGA	2 cut(s)	805, 882
PkrI	GCNGC	1 cut(s)	191
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
PscI	ACATGT	1 cut(s)	228
PshBI	ATTAAT	1 cut(s)	270
Psp6I	CCWGG	3 cut(s)	199, 549, 882
PspEI	GGTNACC	1 cut(s)	841
PspGI	CCWGG	3 cut(s)	199, 549, 882
PspN4I	GGNNCC	1 cut(s)	811
PsuI	RGATCY	2 cut(s)	91, 809
PvuII	CAGCTG	1 cut(s)	697
RsaI	GTAC	2 cut(s)	227, 755
RsaNI	GTAC	2 cut(s)	226, 754
RseI	CAYNNNNRTG	1 cut(s)	875
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	5 cut(s)	246, 270, 381, 387, 467
SatI	GCNGC	1 cut(s)	190
Sau3AI	GATC	6 cut(s)	91, 786, 792, 809, 855, 879
SchI	GAGTC	1 cut(s)	481
ScrFI	CCNGG	4 cut(s)	201, 551, 807, 884
SfaNI	GCATC	4 cut(s)	113, 154, 243, 839
SfcI	CTRYAG	1 cut(s)	102
Sfr274I	CTCGAG	1 cut(s)	761
SlaI	CTCGAG	1 cut(s)	761
SmiMI	CAYNNNNRTG	1 cut(s)	875
SmlI	CTYRAG	1 cut(s)	761
SmoI	CTYRAG	1 cut(s)	761
Sse9I	AATT	8 cut(s)	131, 193, 271, 388, 668, 738, 775, 888
SsiI	CCGC	3 cut(s)	190, 291, 726
SspMI	CTAG	1 cut(s)	461
StyD4I	CCNGG	4 cut(s)	199, 549, 805, 882
TaiI	ACGT	1 cut(s)	416
TaqI	TCGA	4 cut(s)	331, 762, 863, 892
TasI	AATT	8 cut(s)	131, 193, 271, 388, 668, 738, 775, 888
TatI	WGTACW	1 cut(s)	753
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	3 cut(s)	157, 346, 408
Tru1I	TTAA	5 cut(s)	246, 270, 381, 387, 467
Tru9I	TTAA	5 cut(s)	246, 270, 381, 387, 467
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	2 cut(s)	441, 841
Tsp45I	GTSAC	2 cut(s)	441, 841
TspDTI	ATGAA	4 cut(s)	338, 630, 676, 750
TspGWI	ACGGA	1 cut(s)	785
TspRI	CASTG	1 cut(s)	159
VspI	ATTAAT	1 cut(s)	270
XapI	RAATTY	3 cut(s)	131, 775, 888
XceI	RCATGY	2 cut(s)	232, 402
XhoI	CTCGAG	1 cut(s)	761
XspI	CTAG	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.