Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004213

Physical Location & Seq

Genomic Coordinates Reverse (-)

13523651 .. 13524993

Gene Structure 1343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G106400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCCAAATATCACCATTGAAAGTGCGTCGTTGGAATCATTTAAGCTTTGGAGTAGTAACCTCTTCCATCTCAACATCTTTGGTGAGAAACTTAAAGATATCCATATAGTTTGGAGAAAAGCTTCTTCGTCATCAAACACAAAATCTTTTAATATGTTTGCTCCAAATCTCAGAAGTTTGAAGTGGGAAGGCAACTTTATGAGTAGTCAACATCTGGGAAAATTAACGAGTTTGGAAAAAGCAGGGATCTTTATGGACTCTGAGCTAAATGACTGCGATAATATATTTAAAGTTATTTGCAGTATGTGCAGGGGTAAAGTTAGTCTAAACCAGTGGACTGTGAAGGCTTTGGTGAGGGGTGGTTCCATGCCAGCAGCACCATTGGTTGATATTTGTAACTTGAGTCTGCATATTAGGAACTTGAATGATGACCTAATTCCAGCAGTGGTATTTCTTCTTGGAGGAATGCCGAATTTGAATACTTTGCACATAAAGTGCACCTTCAGCTCAGGAGTGGCTAATTATTTATGTTCCGGGATTGATATGGAATATTGGAAACTACAAGGCCTTGCTTTCATTTATCAGCTCAAAGAGGCAACCCTGGAGCTTTCCAATGGGTTCAATGGAATTGAGTTTGCTAGGTGTATCCTCGAGCATGCCCCAGATTTGGAGAATATGGTCATATTTCATTTACAAAAGTATTCTGATGATGTATGGGAGTTAAAAGACAACGTCATTTCTAATGCCACGGTTGTCTCTCAAGTCAGAAAGCCAGAGAAGAAAAGTTGGTCTGATTTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBD

Protein Analysis

268

Amino Acids

30.1

Weight (kDa)

6.65

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004213)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16170 FvH4_6g18953 FvH4_7g04740 FvH4_7g04740
malus_domestica	MD02G1269000.v1.1 MD04G1145300.v1.1 MD04G1145500.v1.1 MD04G1145600.v1.1 MD04G1145900.v1.1 MD12G1159100.v1.1
prunus_persica	Prupe.2G052100_v2.0.a1 Prupe.7G105700_v2.0.a1 Prupe.7G106400_v2.0.a1
pyrus_communis	pycom04g13150
rosa_chinensis	RchiOBHm_Chr1g0330111
rosa_laevigata	RLG00000029830
rosa_multiflora	Rmu_sc0004673.1_g000009
rosa_roxburghii	Rroxscaffold_4G00320200 Rroxscaffold_4G00320300 Rroxscaffold_4G00320320 Rroxscaffold_4G00320330
rosa_rugosa	Rorug01G0086000 Rorug01G0086100 Rorug01G0086200 Rorug02G0131100 Rorug03G0137300
rosa_samantha	Rh1AG104600 Rh1AG104700 Rh1BG082800 Rh1CG100200 Rh1DG107500 Rh1DG108500
rosa_wichuraiana	Rw0G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	1 cut(s)	472
AcuI	CTGAAG	1 cut(s)	487
AfiI	CCNNNNNNNGG	1 cut(s)	667
AgsI	TTSAA	5 cut(s)	20, 181, 424, 478, 622
AjnI	CCWGG	1 cut(s)	600
AluBI	AGCT	6 cut(s)	46, 122, 265, 507, 586, 607
AluI	AGCT	6 cut(s)	46, 122, 265, 507, 586, 607
Alw21I	GWGCWC	1 cut(s)	500
Alw26I	GTCTC	1 cut(s)	760
Alw44I	GTGCAC	1 cut(s)	496
AlwI	GGATC	1 cut(s)	254
Ama87I	CYCGRG	1 cut(s)	650
AoxI	GGCC	1 cut(s)	565
ApaLI	GTGCAC	1 cut(s)	496
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	1 cut(s)	472
Asp700I	GAANNNNTTC	1 cut(s)	121
AsuC2I	CCSGG	1 cut(s)	535
AsuHPI	GGTGA	3 cut(s)	4, 95, 364
AvaI	CYCGRG	1 cut(s)	650
BaeGI	GKGCMC	1 cut(s)	500
Bbv12I	GWGCWC	1 cut(s)	500
BbvI	GCAGC	1 cut(s)	386
BccI	CCATC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	602
BciVI	GTATCC	1 cut(s)	656
BcnI	CCSGG	1 cut(s)	535
BcoDI	GTCTC	1 cut(s)	760
BfaI	CTAG	1 cut(s)	639
BfuI	GTATCC	1 cut(s)	656
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
Bme1390I	CCNGG	2 cut(s)	535, 602
BmeT110I	CYCGRG	1 cut(s)	650
BmiI	GGNNCC	1 cut(s)	364
BmrFI	CCNGG	2 cut(s)	535, 602
BpmI	CTGGAG	1 cut(s)	623
Bpu10I	CCTNAGC	1 cut(s)	508
BpuEI	CTTGAG	2 cut(s)	421, 744
BpuMI	CCSGG	1 cut(s)	535
BsaJI	CCNNGG	2 cut(s)	600, 747
Bsc4I	CCNNNNNNNGG	1 cut(s)	667
Bse1I	ACTGG	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	602
BseDI	CCNNGG	2 cut(s)	600, 747
BseLI	CCNNNNNNNGG	1 cut(s)	667
BseMII	CTCAG	3 cut(s)	184, 252, 522
BseNI	ACTGG	1 cut(s)	331
BseSI	GKGCMC	1 cut(s)	500
BseXI	GCAGC	1 cut(s)	386
BsgI	GTGCAG	1 cut(s)	328
BshFI	GGCC	1 cut(s)	567
BsiHKAI	GWGCWC	1 cut(s)	500
BsiHKCI	CYCGRG	1 cut(s)	650
BsiSI	CCGG	1 cut(s)	534
BslI	CCNNNNNNNGG	1 cut(s)	667
BsmAI	GTCTC	1 cut(s)	760
BsmI	GAATGC	1 cut(s)	471
BsnI	GGCC	1 cut(s)	567
BsoBI	CYCGRG	1 cut(s)	650
Bsp1286I	GDGCHC	1 cut(s)	500
Bsp143I	GATC	1 cut(s)	246
BspANI	GGCC	1 cut(s)	567
BspCNI	CTCAG	3 cut(s)	183, 253, 521
BspLI	GGNNCC	1 cut(s)	364
BspPI	GGATC	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	2 cut(s)	600, 747
BssMI	GATC	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	602
Bst4CI	ACNGT	2 cut(s)	340, 751
Bst6I	CTCTTC	1 cut(s)	68
BstAPI	GCANNNNNTGC	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	372, 657
BstDEI	CTNAG	3 cut(s)	170, 261, 508
BstDSI	CCRYGG	1 cut(s)	747
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	1 cut(s)	760
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	2 cut(s)	306, 504
BstNI	CCWGG	1 cut(s)	602
BstNSI	RCATGY	1 cut(s)	659
BstSCI	CCNGG	2 cut(s)	533, 600
BstSLI	GKGCMC	1 cut(s)	500
BstV1I	GCAGC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BsuI	GTATCC	1 cut(s)	656
BsuRI	GGCC	1 cut(s)	567
BtgI	CCRYGG	1 cut(s)	747
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	2 cut(s)	338, 450
Cac8I	GCNNGC	2 cut(s)	372, 657
CseI	GACGC	1 cut(s)	15
CviAII	CATG	2 cut(s)	367, 656
DdeI	CTNAG	3 cut(s)	170, 261, 508
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
DraI	TTTAAA	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco147I	AGGCCT	1 cut(s)	567
Eco32I	GATATC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	487
Eco88I	CYCGRG	1 cut(s)	650
EcoRII	CCWGG	1 cut(s)	600
EcoRV	GATATC	1 cut(s)	100
FaeI	CATG	2 cut(s)	370, 659
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FatI	CATG	2 cut(s)	366, 655
Fnu4HI	GCNGC	1 cut(s)	375
Fsp4HI	GCNGC	1 cut(s)	375
FspBI	CTAG	1 cut(s)	639
GluI	GCNGC	1 cut(s)	375
GsuI	CTGGAG	1 cut(s)	623
HaeIII	GGCC	1 cut(s)	567
HapII	CCGG	1 cut(s)	534
HgaI	GACGC	1 cut(s)	15
Hin1II	CATG	2 cut(s)	370, 659
HincII	GTYRAC	1 cut(s)	209
HindII	GTYRAC	1 cut(s)	209
HindIII	AAGCTT	2 cut(s)	44, 120
HinfI	GANTC	3 cut(s)	35, 257, 403
HpaII	CCGG	1 cut(s)	534
HphI	GGTGA	3 cut(s)	4, 95, 364
Hpy166II	GTNNAC	3 cut(s)	209, 336, 498
Hpy188I	TCNGA	5 cut(s)	173, 262, 706, 767, 793
Hpy188III	TCNNGA	1 cut(s)	510
Hpy8I	GTNNAC	3 cut(s)	209, 336, 498
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	3 cut(s)	182, 337, 511
HpyCH4III	ACNGT	2 cut(s)	340, 751
HpyCH4IV	ACGT	1 cut(s)	732
HpyCH4V	TGCA	5 cut(s)	300, 309, 409, 487, 498
HpyF10VI	GCNNNNNNNGC	2 cut(s)	306, 504
HpyF3I	CTNAG	3 cut(s)	170, 261, 508
HpySE526I	ACGT	1 cut(s)	732
Hsp92II	CATG	2 cut(s)	370, 659
Kzo9I	GATC	1 cut(s)	246
LmnI	GCTCC	2 cut(s)	166, 604
Lsp1109I	GCAGC	1 cut(s)	386
MaeI	CTAG	1 cut(s)	639
MaeII	ACGT	1 cut(s)	732
MaeIII	GTNAC	2 cut(s)	56, 395
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	4 cut(s)	55, 117, 446, 790
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	1 cut(s)	500
MluCI	AATT	5 cut(s)	221, 435, 472, 520, 627
MlyI	GAGTC	2 cut(s)	251, 412
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	5 cut(s)	71, 348, 455, 586, 659
MroXI	GAANNNNTTC	1 cut(s)	121
MseI	TTAA	6 cut(s)	42, 93, 150, 224, 288, 722
MspI	CCGG	1 cut(s)	534
MspR9I	CCNGG	2 cut(s)	535, 602
Mva1269I	GAATGC	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	602
MwoI	GCNNNNNNNGC	2 cut(s)	306, 504
NciI	CCSGG	1 cut(s)	535
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	2 cut(s)	370, 659
NlaIV	GGNNCC	1 cut(s)	364
NspI	RCATGY	1 cut(s)	659
PaeI	GCATGC	1 cut(s)	659
PaeR7I	CTCGAG	1 cut(s)	650
PceI	AGGCCT	1 cut(s)	567
PctI	GAATGC	1 cut(s)	471
PdmI	GAANNNNTTC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	35
PflFI	GACNNNGTC	1 cut(s)	731
PfoI	TCCNGGA	1 cut(s)	533
PkrI	GCNGC	1 cut(s)	376
PleI	GAGTC	2 cut(s)	251, 411
PpsI	GAGTC	2 cut(s)	251, 411
Psp6I	CCWGG	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	600
PspN4I	GGNNCC	1 cut(s)	364
PspXI	VCTCGAGB	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	246
PsyI	GACNNNGTC	1 cut(s)	731
SaqAI	TTAA	6 cut(s)	42, 93, 150, 224, 288, 722
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	1 cut(s)	246
SchI	GAGTC	2 cut(s)	251, 412
ScrFI	CCNGG	2 cut(s)	535, 602
SduI	GDGCHC	1 cut(s)	500
Sfr274I	CTCGAG	1 cut(s)	650
SlaI	CTCGAG	1 cut(s)	650
SmlI	CTYRAG	3 cut(s)	400, 650, 759
SmoI	CTYRAG	3 cut(s)	400, 650, 759
SphI	GCATGC	1 cut(s)	659
Sse9I	AATT	5 cut(s)	221, 435, 472, 520, 627
SseBI	AGGCCT	1 cut(s)	567
SspI	AATATT	1 cut(s)	551
SspMI	CTAG	1 cut(s)	639
StuI	AGGCCT	1 cut(s)	567
StyD4I	CCNGG	2 cut(s)	533, 600
TaaI	ACNGT	2 cut(s)	340, 751
TaiI	ACGT	1 cut(s)	735
TaqI	TCGA	1 cut(s)	651
TasI	AATT	5 cut(s)	221, 435, 472, 520, 627
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	6 cut(s)	42, 93, 150, 224, 288, 722
Tru9I	TTAA	6 cut(s)	42, 93, 150, 224, 288, 722
TscAI	CASTG	2 cut(s)	338, 450
TseI	GCWGC	1 cut(s)	374
TspDTI	ATGAA	2 cut(s)	565, 677
TspRI	CASTG	2 cut(s)	338, 450
Tth111I	GACNNNGTC	1 cut(s)	731
VneI	GTGCAC	1 cut(s)	496
XapI	RAATTY	1 cut(s)	472
XceI	RCATGY	1 cut(s)	659
XhoI	CTCGAG	1 cut(s)	650
XmnI	GAANNNNTTC	1 cut(s)	121
XspI	CTAG	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.