Rh1DG107500

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0004213
Physical Location & Seq
Forward (+)
19875389 .. 19877855
2467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG107500.1

Sequence Viewer

Length: 489 bp
ATGTACCGGTGGAATACCTTACCGGAAGTGCCTACCAATGGGGCTATGTTCAAAGAATGTTCCATGCAAGCACCATTAGACATTCTTCGCCTGGTTATTGTACTTACGAGCTTCAGTAATGTCATAGTTCCAATAACGGCATCTGTTCTCAGAAGAACTGGTTATCTGAATAGCTTGGTGATAAGTACTTCTAAACCATTTAGATCGGACCCTAAATCTACATTGCAGTCTTCATCTGGATTTGATATGGGATACTGGAAATTGCAAAACCTCACTTTCATTTACCAGCTGAAGGATGTGAGCATAGACCTCTCCAGCGGGTCTAATGAAATTGAGTTTGCAAAGTACATTCTCGAGAATGCTCCGAATTTGAAGAAGATCGTGATCCGTCATCATCCGGGATCCCAACAATCAAATATCGTGGTAGGCAAGGTGACCAGATTCAAGATCATTTCGAGAGCCATTATTGTGATCCAGGAAATTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

162

Amino Acids

18.29

Weight (kDa)

9.83

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 108 - 129 2.5e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 318
AclWI GGATC 4 cut(s) 379, 396, 409, 466
AcsI RAATTY 2 cut(s) 367, 480
AcuI CTGAAG 2 cut(s) 97, 311
AfaI GTAC 4 cut(s) 5, 102, 187, 347
AfiI CCNNNNNNNGG 2 cut(s) 38, 292
AgeI ACCGGT 1 cut(s) 6
AgsI TTSAA 3 cut(s) 52, 373, 445
AjnI CCWGG 2 cut(s) 90, 474
AluBI AGCT 3 cut(s) 111, 174, 289
AluI AGCT 3 cut(s) 111, 174, 289
AlwI GGATC 4 cut(s) 379, 396, 409, 466
Ama87I CYCGRG 1 cut(s) 353
ApoI RAATTY 2 cut(s) 367, 480
AsiGI ACCGGT 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 208
AsuC2I CCSGG 1 cut(s) 399
AsuHPI GGTGA 2 cut(s) 190, 445
AvaI CYCGRG 1 cut(s) 353
AvaII GGWCC 1 cut(s) 208
BamHI GGATCC 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 222
BceAI ACGGC 1 cut(s) 153
BciT130I CCWGG 2 cut(s) 92, 476
BciVI GTATCC 1 cut(s) 245
BcnI CCSGG 1 cut(s) 399
BfuI GTATCC 1 cut(s) 245
BmcAI AGTACT 1 cut(s) 187
Bme1390I CCNGG 3 cut(s) 92, 399, 476
Bme18I GGWCC 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 353
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 2 cut(s) 210, 403
BmrFI CCNGG 3 cut(s) 92, 399, 476
BmsI GCATC 1 cut(s) 149
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 298
BpuMI CCSGG 1 cut(s) 399
BsaBI GATNNNNATC 1 cut(s) 383
BsaWI WCCGGW 2 cut(s) 6, 22
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 292
Bse118I RCCGGY 1 cut(s) 6
Bse1I ACTGG 2 cut(s) 163, 260
Bse3DI GCAATG 1 cut(s) 221
Bse8I GATNNNNATC 1 cut(s) 383
BseBI CCWGG 2 cut(s) 92, 476
BseGI GGATG 2 cut(s) 301, 394
BseJI GATNNNNATC 1 cut(s) 383
BseLI CCNNNNNNNGG 2 cut(s) 38, 292
BseMI GCAATG 1 cut(s) 221
BseMII CTCAG 1 cut(s) 163
BseNI ACTGG 2 cut(s) 163, 260
BshTI ACCGGT 1 cut(s) 6
BsiHKCI CYCGRG 1 cut(s) 353
BsiSI CCGG 3 cut(s) 7, 23, 398
BslI CCNNNNNNNGG 2 cut(s) 38, 292
BsmI GAATGC 1 cut(s) 364
BsoBI CYCGRG 1 cut(s) 353
Bsp143I GATC 6 cut(s) 203, 378, 384, 401, 447, 471
BspACI CCGC 1 cut(s) 318
BspCNI CTCAG 1 cut(s) 162
BspLI GGNNCC 2 cut(s) 210, 403
BspPI GGATC 4 cut(s) 379, 396, 409, 466
BsrDI GCAATG 1 cut(s) 221
BsrFI RCCGGY 1 cut(s) 6
BsrI ACTGG 2 cut(s) 163, 260
BssAI RCCGGY 1 cut(s) 6
BssMI GATC 6 cut(s) 203, 378, 384, 401, 447, 471
Bst2UI CCWGG 2 cut(s) 92, 476
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 149
BstEII GGTNACC 1 cut(s) 433
BstF5I GGATG 2 cut(s) 301, 394
BstKTI GATC 6 cut(s) 206, 381, 387, 404, 450, 474
BstMBI GATC 6 cut(s) 203, 378, 384, 401, 447, 471
BstNI CCWGG 2 cut(s) 92, 476
BstPI GGTNACC 1 cut(s) 433
BstSCI CCNGG 3 cut(s) 90, 397, 474
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 401
BstYI RGATCY 1 cut(s) 401
BsuI GTATCC 1 cut(s) 245
BtsCI GGATG 2 cut(s) 301, 394
Cac8I GCNNGC 1 cut(s) 69
Cfr10I RCCGGY 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 208
Csp6I GTAC 4 cut(s) 4, 101, 186, 346
CspAI ACCGGT 1 cut(s) 6
CspCI CAANNNNNGTGG 2 cut(s) 402, 437
CviAII CATG 1 cut(s) 64
CviJI RGCY 5 cut(s) 44, 111, 174, 289, 461
CviKI_1 RGCY 5 cut(s) 44, 111, 174, 289, 461
CviQI GTAC 4 cut(s) 4, 101, 186, 346
DdeI CTNAG 1 cut(s) 149
DpnI GATC 6 cut(s) 205, 380, 386, 403, 449, 473
DpnII GATC 6 cut(s) 203, 378, 384, 401, 447, 471
Eco47I GGWCC 1 cut(s) 208
Eco57I CTGAAG 2 cut(s) 97, 311
Eco88I CYCGRG 1 cut(s) 353
Eco91I GGTNACC 1 cut(s) 433
EcoO65I GGTNACC 1 cut(s) 433
EcoRII CCWGG 2 cut(s) 90, 474
FaeI CATG 1 cut(s) 67
FaiI YATR 5 cut(s) 47, 65, 125, 248, 305
FatI CATG 1 cut(s) 63
FauI CCCGC 1 cut(s) 311
FokI GGATG 2 cut(s) 308, 381
GsuI CTGGAG 1 cut(s) 298
HapII CCGG 3 cut(s) 7, 23, 398
Hin1II CATG 1 cut(s) 67
HinfI GANTC 1 cut(s) 441
HpaII CCGG 3 cut(s) 7, 23, 398
HphI GGTGA 2 cut(s) 190, 445
Hpy188I TCNGA 4 cut(s) 152, 168, 208, 366
Hpy188III TCNNGA 6 cut(s) 237, 353, 355, 382, 445, 456
HpyAV CCTTC 1 cut(s) 286
HpyCH4V TGCA 4 cut(s) 67, 226, 265, 341
HpyF3I CTNAG 1 cut(s) 149
Hsp92II CATG 1 cut(s) 67
Kzo9I GATC 6 cut(s) 203, 378, 384, 401, 447, 471
LmnI GCTCC 1 cut(s) 367
LweI GCATC 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 433
MalI GATC 6 cut(s) 205, 380, 386, 403, 449, 473
MboI GATC 6 cut(s) 203, 378, 384, 401, 447, 471
MboII GAAGA 5 cut(s) 77, 165, 222, 385, 388
MflI RGATCY 1 cut(s) 401
MluCI AATT 4 cut(s) 260, 330, 367, 480
MnlI CCTC 2 cut(s) 281, 320
MslI CAYNNNNRTG 1 cut(s) 467
MspA1I CMGCKG 2 cut(s) 289, 318
MspI CCGG 3 cut(s) 7, 23, 398
MspR9I CCNGG 3 cut(s) 92, 399, 476
Mva1269I GAATGC 1 cut(s) 364
MvaI CCWGG 2 cut(s) 92, 476
NciI CCSGG 1 cut(s) 399
NdeII GATC 6 cut(s) 203, 378, 384, 401, 447, 471
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 2 cut(s) 210, 403
NmuCI GTSAC 1 cut(s) 433
PaeR7I CTCGAG 1 cut(s) 353
PctI GAATGC 1 cut(s) 364
PfeI GAWTC 1 cut(s) 441
PfoI TCCNGGA 2 cut(s) 397, 474
PinAI ACCGGT 1 cut(s) 6
Psp6I CCWGG 2 cut(s) 90, 474
PspEI GGTNACC 1 cut(s) 433
PspGI CCWGG 2 cut(s) 90, 474
PspN4I GGNNCC 2 cut(s) 210, 403
PspPI GGNCC 1 cut(s) 208
PsuI RGATCY 1 cut(s) 401
PvuII CAGCTG 1 cut(s) 289
RsaI GTAC 4 cut(s) 5, 102, 187, 347
RsaNI GTAC 4 cut(s) 4, 101, 186, 346
RseI CAYNNNNRTG 1 cut(s) 467
Sau3AI GATC 6 cut(s) 203, 378, 384, 401, 447, 471
Sau96I GGNCC 1 cut(s) 208
ScaI AGTACT 1 cut(s) 187
ScrFI CCNGG 3 cut(s) 92, 399, 476
SetI ASST 7 cut(s) 20, 113, 176, 273, 291, 312, 435
SfaNI GCATC 1 cut(s) 149
Sfr274I CTCGAG 1 cut(s) 353
SinI GGWCC 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 467
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 4 cut(s) 260, 330, 367, 480
SsiI CCGC 1 cut(s) 318
StyD4I CCNGG 3 cut(s) 90, 397, 474
TaqI TCGA 2 cut(s) 354, 455
TasI AATT 4 cut(s) 260, 330, 367, 480
TatI WGTACW 3 cut(s) 100, 185, 345
TfiI GAWTC 1 cut(s) 441
TseFI GTSAC 1 cut(s) 433
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 3 cut(s) 222, 268, 342
TspGWI ACGGA 1 cut(s) 377
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 2 cut(s) 367, 480
XhoI CTCGAG 1 cut(s) 353
ZrmI AGTACT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.