Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004213

Physical Location & Seq

Genomic Coordinates Forward (+)

6041216 .. 6046797

Gene Structure 5582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G052100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGATGTTACAGAAGAAGCTACGGTCAACTAGAAGTTTTCAAGCTGAAGGAGCTTTTAGTGAGGGTATAACAGACAGATTCAGTAATCTTCCAGATGAAGTTGCTCATCTTATTCTTTCCTTCCTCACGTTCAAAGACCTCACTCGAGTGGGTACTGTGTCCAAAAGATGCAGAAGATTTTATGTATCAGCGCCGTCAGTGAATTTTGATGAGACTCAGGCAAGAACCAACCAGAAGCAAGTAGAGTTGATGAGTTCTTTGGATCGGTACTTGTTTCATCGTGGTGATAATAAGTTGCAGCGTTTTTCCGTTTTCTGGAATTTCTTTAAAAGCAAAAGTGTAAGTAAGCTTTCTGATGAGCATTTTCGGATAATCACGTGGATTCATAATGCAGTAAGGTGTAATGTTGAAGTGCTTAACCTTTATTTCTTAGCACTCCATACCACCATGTTTGCGTTGCCTTCTTGCGTTTTTCTTTCTCAATCCTTGAAGTCTCTATCAGTTTGCTGTTCCGGGGTGATTCTTCAAACACCCTCCTTATCTTTTTCATGCAATCTCCTTTCCTTGAGGTTGACTTGTGTTAATATAGTAGATGAGAGTTTCTTTAAATGGATCTCATGTACCTGCAAATGCCTTAAGGAAATACAACTTTTTCGCGTTACAGGGATAGAACGTATCACCATTGAAAGCTTGTCTTTGGAATTATTCGTGTTTGTTTCAGTTTGTGGTATTAAACTCCTCCATCTTAGCATCTCTGGTGAGAAACTTGAAGAAATAGAATTAGATTGGGAATTTGATGCTCGTCCTGACAGCCGCTCATTAAATATTTTTGCGCCAAATCTTAGAAAGTTGAAATGGGAAGGGAAACTGTTGAATGGCCAAAACCTCGGGAAGTTAATGAGTTTAGAAAAAGCTCAGATTTTTCTGGAGCCTGAAGTAAATGACTTTGACAATTTACATGCAGTTTGTAGCAGTTTGTGCAAGGATAAAGTTCTTATTCTAAACGAGAAGACCATTAAGGCTCTGCACAAGGAAGGTTCCATGCCAGCATCGTTAGATATTTTTCATTTCGGTATGCATTTTAGTTGCTTGAATGATGCCCTAGTTCCAGCAGTGGCCTGTCTTCTTAAAGGAATGCCTAATTTGAATACCTTGAATATAAAGTCTAAACCACCCAGAGGGCAGCCTTGCATGTCATCTGGGTTTGATATGGGATACTGGAAATTGCAAAACTTTGCTTTCATTTATCATCTTGAGGAAGTAACTATTGAGCTCTCCAATGGGTCTAATGAAATTGAGTTTGCGCGGTACATTCTCGAGCATGCTGTGAATTTGAAGAAAATTGTCATTCTTTTTCAATCAAGATCCCAACAATCTAATGACGTACTAGGGAAGGTAAGCAAATGCAAGATGATCTCGACGCCCATTATTGTGATTCGGGGAACTGTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBD

Protein Analysis

485

Amino Acids

55.09

Weight (kDa)

8.8

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004213)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16170 FvH4_6g18953 FvH4_7g04740 FvH4_7g04740
malus_domestica	MD02G1269000.v1.1 MD04G1145300.v1.1 MD04G1145500.v1.1 MD04G1145600.v1.1 MD04G1145900.v1.1 MD12G1159100.v1.1
prunus_persica	Prupe.2G052100_v2.0.a1 Prupe.7G105700_v2.0.a1 Prupe.7G106400_v2.0.a1
pyrus_communis	pycom04g13150
rosa_chinensis	RchiOBHm_Chr1g0330111
rosa_laevigata	RLG00000029830
rosa_multiflora	Rmu_sc0004673.1_g000009
rosa_roxburghii	Rroxscaffold_4G00320200 Rroxscaffold_4G00320300 Rroxscaffold_4G00320320 Rroxscaffold_4G00320330
rosa_rugosa	Rorug01G0086000 Rorug01G0086100 Rorug01G0086200 Rorug02G0131100 Rorug03G0137300
rosa_samantha	Rh1AG104600 Rh1AG104700 Rh1BG082800 Rh1CG100200 Rh1DG107500 Rh1DG108500
rosa_wichuraiana	Rw0G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	632
AccBSI	CCGCTC	1 cut(s)	816
AccII	CGCG	2 cut(s)	657, 1306
AciI	CCGC	2 cut(s)	814, 1306
AclWI	GGATC	3 cut(s)	270, 620, 1359
AcoI	YGGCCR	1 cut(s)	877
AcsI	RAATTY	4 cut(s)	202, 319, 791, 1330
AcuI	CTGAAG	2 cut(s)	66, 954
AcvI	CACGTG	1 cut(s)	378
AcyI	GRCGYC	1 cut(s)	1421
AfaI	GTAC	5 cut(s)	154, 269, 622, 1310, 1386
AfiI	CCNNNNNNNGG	2 cut(s)	315, 1178
AflII	CTTAAG	1 cut(s)	635
AleI	CACNNNNGTG	1 cut(s)	146
AluBI	AGCT	7 cut(s)	19, 44, 53, 349, 690, 914, 1273
AluI	AGCT	7 cut(s)	19, 44, 53, 349, 690, 914, 1273
Alw21I	GWGCWC	1 cut(s)	1275
Alw26I	GTCTC	2 cut(s)	206, 498
AlwI	GGATC	3 cut(s)	270, 620, 1359
Ama87I	CYCGRG	3 cut(s)	144, 887, 1316
AoxI	GGCC	2 cut(s)	877, 1116
ApeKI	GCWGC	2 cut(s)	298, 1183
ApoI	RAATTY	4 cut(s)	202, 319, 791, 1330
AspLEI	GCGC	3 cut(s)	193, 835, 1306
AsuC2I	CCSGG	1 cut(s)	514
AsuHPI	GGTGA	4 cut(s)	296, 529, 670, 770
AvaI	CYCGRG	3 cut(s)	144, 887, 1316
BalI	TGGCCA	1 cut(s)	879
BanII	GRGCYC	1 cut(s)	1275
BbrPI	CACGTG	1 cut(s)	378
BbsI	GAAGAC	2 cut(s)	1016, 1115
Bbv12I	GWGCWC	1 cut(s)	1275
BbvI	GCAGC	2 cut(s)	310, 1195
BccI	CCATC	1 cut(s)	750
BceAI	ACGGC	1 cut(s)	178
BciVI	GTATCC	1 cut(s)	1208
BcnI	CCSGG	1 cut(s)	514
BcoDI	GTCTC	2 cut(s)	206, 498
BfaI	CTAG	3 cut(s)	30, 1103, 1388
BfoI	RGCGCY	1 cut(s)	194
BfrI	CTTAAG	1 cut(s)	635
BfuAI	ACCTGC	1 cut(s)	632
BfuI	GTATCC	1 cut(s)	1208
BisI	GCNGC	3 cut(s)	299, 814, 1184
BlsI	GCNGC	3 cut(s)	300, 815, 1185
Bme1390I	CCNGG	1 cut(s)	514
BmeT110I	CYCGRG	3 cut(s)	144, 887, 1316
BmiI	GGNNCC	2 cut(s)	930, 1039
BmrFI	CCNGG	1 cut(s)	514
BmsI	GCATC	5 cut(s)	158, 759, 787, 1058, 1087
BpiI	GAAGAC	2 cut(s)	1016, 1115
BpmI	CTGGAG	1 cut(s)	947
BpuEI	CTTGAG	2 cut(s)	586, 1274
BpuMI	CCSGG	1 cut(s)	514
BsaAI	YACGTR	1 cut(s)	378
BsaHI	GRCGYC	1 cut(s)	1421
BsaJI	CCNNGG	2 cut(s)	513, 886
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 1178
Bse1I	ACTGG	1 cut(s)	1223
BseDI	CCNNGG	2 cut(s)	513, 886
BseLI	CCNNNNNNNGG	2 cut(s)	315, 1178
BseMII	CTCAG	2 cut(s)	230, 929
BseNI	ACTGG	1 cut(s)	1223
BseRI	GAGGAG	1 cut(s)	728
BseXI	GCAGC	2 cut(s)	310, 1195
BsgI	GTGCAG	1 cut(s)	1010
Bsh1236I	CGCG	2 cut(s)	657, 1306
BshFI	GGCC	2 cut(s)	879, 1118
BsiHKAI	GWGCWC	1 cut(s)	1275
BsiHKCI	CYCGRG	3 cut(s)	144, 887, 1316
BsiSI	CCGG	1 cut(s)	513
BslI	CCNNNNNNNGG	2 cut(s)	315, 1178
BsmAI	GTCTC	2 cut(s)	206, 498
BsmI	GAATGC	1 cut(s)	1140
BsnI	GGCC	2 cut(s)	879, 1118
BsoBI	CYCGRG	3 cut(s)	144, 887, 1316
Bsp1286I	GDGCHC	1 cut(s)	1275
Bsp143I	GATC	4 cut(s)	262, 612, 1364, 1413
BspACI	CCGC	2 cut(s)	814, 1306
BspANI	GGCC	2 cut(s)	879, 1118
BspCNI	CTCAG	2 cut(s)	229, 928
BspFNI	CGCG	2 cut(s)	657, 1306
BspLI	GGNNCC	2 cut(s)	930, 1039
BspMI	ACCTGC	1 cut(s)	632
BspPI	GGATC	3 cut(s)	270, 620, 1359
BspTI	CTTAAG	1 cut(s)	635
BsrBI	CCGCTC	1 cut(s)	816
BsrI	ACTGG	1 cut(s)	1223
BssECI	CCNNGG	2 cut(s)	513, 886
BssMI	GATC	4 cut(s)	262, 612, 1364, 1413
BssNI	GRCGYC	1 cut(s)	1421
Bst4CI	ACNGT	4 cut(s)	24, 157, 870, 1447
BstACI	GRCGYC	1 cut(s)	1421
BstAFI	CTTAAG	1 cut(s)	635
BstAPI	GCANNNNNTGC	1 cut(s)	978
BstBAI	YACGTR	1 cut(s)	378
BstC8I	GCNNGC	2 cut(s)	1047, 1323
BstDEI	CTNAG	5 cut(s)	216, 430, 746, 842, 915
BstFNI	CGCG	2 cut(s)	657, 1306
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	3 cut(s)	193, 835, 1306
BstKTI	GATC	4 cut(s)	265, 615, 1367, 1416
BstMAI	GTCTC	2 cut(s)	206, 498
BstMBI	GATC	4 cut(s)	262, 612, 1364, 1413
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 978
BstNSI	RCATGY	3 cut(s)	962, 1195, 1325
BstSCI	CCNGG	1 cut(s)	512
BstUI	CGCG	2 cut(s)	657, 1306
BstV1I	GCAGC	2 cut(s)	310, 1195
BstV2I	GAAGAC	2 cut(s)	1016, 1115
BstX2I	RGATCY	2 cut(s)	612, 1364
BstYI	RGATCY	2 cut(s)	612, 1364
BsuI	GTATCC	1 cut(s)	1208
BsuRI	GGCC	2 cut(s)	879, 1118
BtsI	GCAGTG	1 cut(s)	1119
BtsIMutI	CAGTG	2 cut(s)	204, 1119
BveI	ACCTGC	1 cut(s)	632
Cac8I	GCNNGC	2 cut(s)	1047, 1323
CfoI	GCGC	3 cut(s)	193, 835, 1306
CseI	GACGC	1 cut(s)	1429
Csp6I	GTAC	5 cut(s)	153, 268, 621, 1309, 1385
CspCI	CAANNNNNGTGG	2 cut(s)	433, 468
CviAII	CATG	7 cut(s)	448, 549, 618, 959, 1042, 1192, 1322
CviQI	GTAC	5 cut(s)	153, 268, 621, 1309, 1385
DdeI	CTNAG	5 cut(s)	216, 430, 746, 842, 915
DpnI	GATC	4 cut(s)	264, 614, 1366, 1415
DpnII	GATC	4 cut(s)	262, 612, 1364, 1413
DraI	TTTAAA	2 cut(s)	328, 607
EaeI	YGGCCR	1 cut(s)	877
Ecl136II	GAGCTC	1 cut(s)	1273
Eco24I	GRGCYC	1 cut(s)	1275
Eco53kI	GAGCTC	1 cut(s)	1273
Eco57I	CTGAAG	2 cut(s)	66, 954
Eco72I	CACGTG	1 cut(s)	378
Eco88I	CYCGRG	3 cut(s)	144, 887, 1316
EcoICRI	GAGCTC	1 cut(s)	1273
EcoT22I	ATGCAT	1 cut(s)	1080
EcoT38I	GRGCYC	1 cut(s)	1275
FaeI	CATG	7 cut(s)	451, 552, 621, 962, 1045, 1195, 1325
FalI	AAGNNNNNCTT	2 cut(s)	679, 711
FatI	CATG	7 cut(s)	447, 548, 617, 958, 1041, 1191, 1321
Fnu4HI	GCNGC	3 cut(s)	299, 814, 1184
FriOI	GRGCYC	1 cut(s)	1275
Fsp4HI	GCNGC	3 cut(s)	299, 814, 1184
FspBI	CTAG	3 cut(s)	30, 1103, 1388
GlaI	GCGC	3 cut(s)	192, 834, 1305
GluI	GCNGC	3 cut(s)	299, 814, 1184
GsuI	CTGGAG	1 cut(s)	947
HaeII	RGCGCY	1 cut(s)	194
HaeIII	GGCC	2 cut(s)	879, 1118
HapII	CCGG	1 cut(s)	513
HgaI	GACGC	1 cut(s)	1429
HhaI	GCGC	3 cut(s)	193, 835, 1306
Hin1I	GRCGYC	1 cut(s)	1421
Hin1II	CATG	7 cut(s)	451, 552, 621, 962, 1045, 1195, 1325
Hin6I	GCGC	3 cut(s)	191, 833, 1304
HinP1I	GCGC	3 cut(s)	191, 833, 1304
HincII	GTYRAC	2 cut(s)	27, 573
HindII	GTYRAC	2 cut(s)	27, 573
HindIII	AAGCTT	2 cut(s)	347, 688
HinfI	GANTC	5 cut(s)	78, 214, 382, 520, 1435
HpaII	CCGG	1 cut(s)	513
HphI	GGTGA	4 cut(s)	296, 529, 670, 770
Hpy166II	GTNNAC	2 cut(s)	27, 573
Hpy188I	TCNGA	3 cut(s)	355, 369, 918
Hpy188III	TCNNGA	9 cut(s)	92, 316, 806, 889, 926, 1253, 1316, 1362, 1417
Hpy8I	GTNNAC	2 cut(s)	27, 573
Hpy99I	CGWCG	1 cut(s)	1423
HpyAV	CCTTC	6 cut(s)	41, 130, 471, 854, 1028, 1387
HpyCH4III	ACNGT	4 cut(s)	24, 157, 870, 1447
HpyCH4IV	ACGT	4 cut(s)	128, 377, 673, 1383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 978
HpyF3I	CTNAG	5 cut(s)	216, 430, 746, 842, 915
HpySE526I	ACGT	4 cut(s)	128, 377, 673, 1383
Hsp92I	GRCGYC	1 cut(s)	1421
Hsp92II	CATG	7 cut(s)	451, 552, 621, 962, 1045, 1195, 1325
HspAI	GCGC	3 cut(s)	191, 833, 1304
Kzo9I	GATC	4 cut(s)	262, 612, 1364, 1413
LmnI	GCTCC	2 cut(s)	50, 928
Lsp1109I	GCAGC	2 cut(s)	310, 1195
LweI	GCATC	5 cut(s)	158, 759, 787, 1058, 1087
MaeI	CTAG	3 cut(s)	30, 1103, 1388
MaeII	ACGT	4 cut(s)	128, 377, 673, 1383
MaeIII	GTNAC	3 cut(s)	6, 658, 1261
MalI	GATC	4 cut(s)	264, 614, 1366, 1415
MbiI	CCGCTC	1 cut(s)	816
MboI	GATC	4 cut(s)	262, 612, 1364, 1413
MboII	GAAGA	8 cut(s)	25, 80, 186, 515, 782, 1021, 1115, 1348
MflI	RGATCY	2 cut(s)	612, 1364
MhlI	GDGCHC	1 cut(s)	1275
MlsI	TGGCCA	1 cut(s)	879
MluNI	TGGCCA	1 cut(s)	879
MlyI	GAGTC	1 cut(s)	208
MnlI	CCTC	9 cut(s)	55, 134, 149, 544, 561, 749, 896, 1172, 1249
Mox20I	TGGCCA	1 cut(s)	879
Mph1103I	ATGCAT	1 cut(s)	1080
MscI	TGGCCA	1 cut(s)	879
MslI	CAYNNNNRTG	3 cut(s)	146, 282, 1430
Msp20I	TGGCCA	1 cut(s)	879
MspCI	CTTAAG	1 cut(s)	635
MspI	CCGG	1 cut(s)	513
MspR9I	CCNGG	1 cut(s)	514
Mva1269I	GAATGC	1 cut(s)	1140
MvnI	CGCG	2 cut(s)	657, 1306
MwoI	GCNNNNNNNGC	2 cut(s)	50, 978
NciI	CCSGG	1 cut(s)	514
NdeII	GATC	4 cut(s)	262, 612, 1364, 1413
NlaIII	CATG	7 cut(s)	451, 552, 621, 962, 1045, 1195, 1325
NlaIV	GGNNCC	2 cut(s)	930, 1039
NsiI	ATGCAT	1 cut(s)	1080
NspI	RCATGY	3 cut(s)	962, 1195, 1325
OliI	CACNNNNGTG	1 cut(s)	146
PaeI	GCATGC	1 cut(s)	1325
PaeR7I	CTCGAG	2 cut(s)	144, 1316
PctI	GAATGC	1 cut(s)	1140
PfeI	GAWTC	4 cut(s)	78, 382, 520, 1435
PkrI	GCNGC	3 cut(s)	300, 815, 1185
PleI	GAGTC	1 cut(s)	208
PmaCI	CACGTG	1 cut(s)	378
PmlI	CACGTG	1 cut(s)	378
PpsI	GAGTC	1 cut(s)	208
Ppu21I	YACGTR	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	1275
PspCI	CACGTG	1 cut(s)	378
PspN4I	GGNNCC	2 cut(s)	930, 1039
PspXI	VCTCGAGB	1 cut(s)	144
PsuI	RGATCY	2 cut(s)	612, 1364
RsaI	GTAC	5 cut(s)	154, 269, 622, 1310, 1386
RsaNI	GTAC	5 cut(s)	153, 268, 621, 1309, 1385
RseI	CAYNNNNRTG	3 cut(s)	146, 282, 1430
SacI	GAGCTC	1 cut(s)	1275
SatI	GCNGC	3 cut(s)	299, 814, 1184
Sau3AI	GATC	4 cut(s)	262, 612, 1364, 1413
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	1 cut(s)	514
SduI	GDGCHC	1 cut(s)	1275
SfaNI	GCATC	5 cut(s)	158, 759, 787, 1058, 1087
Sfr274I	CTCGAG	2 cut(s)	144, 1316
SlaI	CTCGAG	2 cut(s)	144, 1316
SmiMI	CAYNNNNRTG	3 cut(s)	146, 282, 1430
SmlI	CTYRAG	5 cut(s)	144, 565, 635, 1253, 1316
SmoI	CTYRAG	5 cut(s)	144, 565, 635, 1253, 1316
SphI	GCATGC	1 cut(s)	1325
SsiI	CCGC	2 cut(s)	814, 1306
SspI	AATATT	1 cut(s)	826
SspMI	CTAG	3 cut(s)	30, 1103, 1388
SstI	GAGCTC	1 cut(s)	1275
StyD4I	CCNGG	1 cut(s)	512
TaaI	ACNGT	4 cut(s)	24, 157, 870, 1447
TaiI	ACGT	4 cut(s)	131, 380, 676, 1386
TaqI	TCGA	3 cut(s)	145, 1317, 1418
TauI	GCSGC	1 cut(s)	816
TfiI	GAWTC	4 cut(s)	78, 382, 520, 1435
TscAI	CASTG	2 cut(s)	204, 1119
TseI	GCWGC	2 cut(s)	298, 1183
TspDTI	ATGAA	7 cut(s)	111, 266, 374, 537, 1055, 1231, 1305
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	2 cut(s)	204, 1119
Vha464I	CTTAAG	1 cut(s)	635
XapI	RAATTY	4 cut(s)	202, 319, 791, 1330
XceI	RCATGY	3 cut(s)	962, 1195, 1325
XhoI	CTCGAG	2 cut(s)	144, 1316
XspI	CTAG	3 cut(s)	30, 1103, 1388
Zsp2I	ATGCAT	1 cut(s)	1080

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.