MD12G1159100.v1.1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0004213
Physical Location & Seq
Forward (+)
23934036 .. 23936036
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1159100.v1.1.491

Sequence Viewer

Length: 378 bp
ATGGAGCGCAAGCGTGAGTTCCGGGCATCTACAAGTCCTAAAGCTGAAGGAACTTCTTCTGAAAGTGGAATAGACAGATTTAGTGTTCTTCCGGAGGAAGTTGCTCATTGTATTCTTTCCTTACTCAATTTCAAGGACCTCACTCGGGTGGGTGCTCTGTCCAAAAGATGCAGACAATTTCATCTCTCAGTTCCGGTGGTGGATTTTGGTACAGTTTGGTGGACAGATGAAAAAAAAAAAATGGATTTAGCGACGCTGATGATTTCTTTTGATAGATACTTGCATTTTCGTGGTCATAACAGGCTGCAGCAAGTCTGCATCGGCTTGGGTTTCTATGCAAGCGATGAAGCGAAGAAAGGTTCTGATGATCATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

126

Amino Acids

14.27

Weight (kDa)

8.49

Isoelectric Point (pI)

34.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 91
AcuI CTGAAG 1 cut(s) 66
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 145
AgsI TTSAA 1 cut(s) 133
AleI CACNNNNGTG 1 cut(s) 146
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
Alw21I GWGCWC 1 cut(s) 157
Ama87I CYCGRG 1 cut(s) 144
Aor13HI TCCGGA 1 cut(s) 91
ApeKI GCWGC 2 cut(s) 304, 307
Asp700I GAANNNNTTC 1 cut(s) 55
AspLEI GCGC 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 136
AsuC2I CCSGG 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 144
AvaII GGWCC 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 157
BbvI GCAGC 2 cut(s) 291, 319
BclI TGATCA 1 cut(s) 367
BcnI CCSGG 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 305
BisI GCNGC 2 cut(s) 305, 308
BlsI GCNGC 2 cut(s) 306, 309
Bme1390I CCNGG 1 cut(s) 23
Bme18I GGWCC 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 3 cut(s) 35, 158, 327
BpuMI CCSGG 1 cut(s) 23
BsaWI WCCGGW 2 cut(s) 91, 193
Bsc4I CCNNNNNNNGG 1 cut(s) 145
BseAI TCCGGA 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 201
BseXI GCAGC 2 cut(s) 291, 319
BsiHKAI GWGCWC 1 cut(s) 157
BsiHKCI CYCGRG 1 cut(s) 144
BsiSI CCGG 3 cut(s) 22, 92, 194
BslI CCNNNNNNNGG 1 cut(s) 145
BsoBI CYCGRG 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 157
Bsp13I TCCGGA 1 cut(s) 91
Bsp143I GATC 1 cut(s) 367
BspCNI CTCAG 1 cut(s) 200
BspEI TCCGGA 1 cut(s) 91
BspMAI CTGCAG 1 cut(s) 309
BssMI GATC 1 cut(s) 367
Bst4CI ACNGT 1 cut(s) 214
BstC8I GCNNGC 2 cut(s) 11, 340
BstDEI CTNAG 1 cut(s) 187
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 1 cut(s) 370
BstMBI GATC 1 cut(s) 367
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 305
BstV1I GCAGC 2 cut(s) 291, 319
BtgZI GCGATG 1 cut(s) 357
Cac8I GCNNGC 2 cut(s) 11, 340
CfoI GCGC 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 136
CseI GACGC 1 cut(s) 262
Csp6I GTAC 1 cut(s) 210
CviJI RGCY 3 cut(s) 44, 304, 324
CviKI_1 RGCY 3 cut(s) 44, 304, 324
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 1 cut(s) 187
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
Eco47I GGWCC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 66
Eco88I CYCGRG 1 cut(s) 144
EcoO109I RGGNCCY 1 cut(s) 136
FaiI YATR 2 cut(s) 297, 336
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 2 cut(s) 305, 308
Fsp4HI GCNGC 2 cut(s) 305, 308
GlaI GCGC 1 cut(s) 8
GluI GCNGC 2 cut(s) 305, 308
HapII CCGG 3 cut(s) 22, 92, 194
HgaI GACGC 1 cut(s) 262
HhaI GCGC 1 cut(s) 9
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HpaII CCGG 3 cut(s) 22, 92, 194
Hpy166II GTNNAC 1 cut(s) 222
Hpy188I TCNGA 2 cut(s) 61, 364
Hpy188III TCNNGA 2 cut(s) 92, 375
Hpy8I GTNNAC 1 cut(s) 222
Hpy99I CGWCG 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 41
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 5 cut(s) 171, 283, 307, 318, 338
HpyF3I CTNAG 1 cut(s) 187
HspAI GCGC 1 cut(s) 7
Kpn2I TCCGGA 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 1 cut(s) 367
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 4 cut(s) 35, 105, 207, 286
Lsp1109I GCAGC 2 cut(s) 291, 319
LweI GCATC 3 cut(s) 35, 158, 327
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 3 cut(s) 48, 80, 364
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 2 cut(s) 127, 176
MnlI CCTC 2 cut(s) 88, 149
MroI TCCGGA 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 55
MslI CAYNNNNRTG 2 cut(s) 146, 288
MspI CCGG 3 cut(s) 22, 92, 194
MspR9I CCNGG 1 cut(s) 23
NciI CCSGG 1 cut(s) 23
NdeII GATC 1 cut(s) 367
OliI CACNNNNGTG 1 cut(s) 146
PdmI GAANNNNTTC 1 cut(s) 55
PkrI GCNGC 2 cut(s) 306, 309
PpuMI RGGWCCY 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 136
PspPI GGNCC 1 cut(s) 136
PspPPI RGGWCCY 1 cut(s) 136
PstI CTGCAG 1 cut(s) 309
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
RseI CAYNNNNRTG 2 cut(s) 146, 288
SatI GCNGC 2 cut(s) 305, 308
Sau3AI GATC 1 cut(s) 367
Sau96I GGNCC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 1 cut(s) 157
SetI ASST 3 cut(s) 46, 141, 361
SfaNI GCATC 3 cut(s) 35, 158, 327
SfcI CTRYAG 1 cut(s) 305
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 2 cut(s) 146, 288
Sse9I AATT 2 cut(s) 127, 176
StyD4I CCNGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 214
TasI AATT 2 cut(s) 127, 176
TseI GCWGC 2 cut(s) 304, 307
TspDTI ATGAA 3 cut(s) 170, 243, 360
VpaK11BI GGWCC 1 cut(s) 136
XmnI GAANNNNTTC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.