Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004213

Physical Location & Seq

Genomic Coordinates Forward (+)

12552461 .. 12553575

Gene Structure 1115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18953.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGTGCGGAAGTATAAGCTCCGACCACGGCCAACTACTAGAGTAGACAGATTTAGTGTCCTTCCAGTAGTTCCAGATGAAGTTGCTCATCATATTCTTGCATTTGTCGAGTTTATAGATCTTGTTCGAGTGAGCACAGTTTCTAAGAGATGCAGACGACTTTATCTATCAATTCCCTCATTGGAACTCAATCAATATGATCTTTCTGCTAGAAGAGATCGCGATGCAACAGAGAGTCTAACTGAGCTTTCTGCTAGAATGGGTCAGGAGGAAGTAGAGTTATTGAATCATATGGACAGATACTTTTTTAATCGTGGGGATAACAGGATACAACATTTTCGTATCCGCTGGAGTTTGGATCGAAAGTCTTCTCATAAGCATATTCAAATGTTTGTGATGCCATCAGACGTCTTGGTTTCTCAATCTTTGGGGTCTCTATCAGTGCGCTTGCAAGGGGTGACTCTTCAAGCTCCTTCCTTGTCTCTTTTATGTAATCTGCATTACTTGAAGCTGACGGAAATTAAAATTGTAGATGAGAGCTTTTTCAAATGGATATCCTGTTCCTGCAAATCAATTAAGGAGTTGCAGCTTGATCATGTTAGAGGGTTGCCAAAGATCACCATTGAAAGTTCATCGTTGAAATCATTCAAGGTTTGGAGTAAGGACATGTTCCATCTCAACATCTTTGGTGAGAAAATCGAAGATATACATATAACATGGAGAAAATCGTCGACTCCACCTAGCAGAAAATGGTTGAACATATCTGCTCCAAATCTTAAGAATTTGAAATGGGAAGGCAATTTGATGAATATCCAAAATCTGGGGAATTTAATGAGTTTGGAAAAAGCTGTGGTTTTTCTGGAGTCTGCTGTAAATGAATTTGACAATCGTGATTATAATAAGAATTTTACCGTCTCGATCATTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBD

Protein Analysis

310

Amino Acids

36.06

Weight (kDa)

9.45

Isoelectric Point (pI)

53.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	25 - 54	3.1e-06	F-box domain
LRR_At5g56370	PF24758	131 - 264	1.1e-06	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004213)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16170 FvH4_6g18953 FvH4_7g04740 FvH4_7g04740
malus_domestica	MD02G1269000.v1.1 MD04G1145300.v1.1 MD04G1145500.v1.1 MD04G1145600.v1.1 MD04G1145900.v1.1 MD12G1159100.v1.1
prunus_persica	Prupe.2G052100_v2.0.a1 Prupe.7G105700_v2.0.a1 Prupe.7G106400_v2.0.a1
pyrus_communis	pycom04g13150
rosa_chinensis	RchiOBHm_Chr1g0330111
rosa_laevigata	RLG00000029830
rosa_multiflora	Rmu_sc0004673.1_g000009
rosa_roxburghii	Rroxscaffold_4G00320200 Rroxscaffold_4G00320300 Rroxscaffold_4G00320320 Rroxscaffold_4G00320330
rosa_rugosa	Rorug01G0086000 Rorug01G0086100 Rorug01G0086200 Rorug02G0131100 Rorug03G0137300
rosa_samantha	Rh1AG104600 Rh1AG104700 Rh1BG082800 Rh1CG100200 Rh1DG107500 Rh1DG108500
rosa_wichuraiana	Rw0G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	897
AatII	GACGTC	1 cut(s)	411
AccB7I	CCANNNNNTGG	1 cut(s)	820
AccI	GTMKAC	2 cut(s)	45, 731
AccII	CGCG	1 cut(s)	222
AciI	CCGC	2 cut(s)	7, 346
AclWI	GGATC	1 cut(s)	366
AcoI	YGGCCR	1 cut(s)	29
AcsI	RAATTY	4 cut(s)	781, 826, 878, 904
AcyI	GRCGYC	1 cut(s)	408
AfiI	CCNNNNNNNGG	1 cut(s)	820
AflII	CTTAAG	1 cut(s)	776
AflIII	ACRYGT	1 cut(s)	666
AloI	GAACNNNNNNTCC	2 cut(s)	544, 576
AluBI	AGCT	7 cut(s)	19, 247, 470, 511, 540, 589, 848
AluI	AGCT	7 cut(s)	19, 247, 470, 511, 540, 589, 848
Alw21I	GWGCWC	1 cut(s)	137
Alw26I	GTCTC	3 cut(s)	438, 486, 919
AlwI	GGATC	1 cut(s)	366
AoxI	GGCC	1 cut(s)	29
ApeKI	GCWGC	1 cut(s)	586
ApoI	RAATTY	4 cut(s)	781, 826, 878, 904
Asp700I	GAANNNNTTC	2 cut(s)	367, 644
AspLEI	GCGC	1 cut(s)	447
AsuHPI	GGTGA	3 cut(s)	469, 610, 701
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	598
BccI	CCATC	2 cut(s)	409, 681
BceAI	ACGGC	1 cut(s)	44
BciVI	GTATCC	2 cut(s)	321, 353
BclI	TGATCA	1 cut(s)	592
BcoDI	GTCTC	3 cut(s)	438, 486, 919
BfaI	CTAG	4 cut(s)	39, 210, 255, 741
BfrI	CTTAAG	1 cut(s)	776
BfuI	GTATCC	2 cut(s)	321, 353
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	1 cut(s)	587
BlsI	GCNGC	1 cut(s)	588
BmsI	GCATC	3 cut(s)	140, 214, 387
BpiI	GAAGAC	1 cut(s)	360
BpmI	CTGGAG	2 cut(s)	370, 881
BsaBI	GATNNNNATC	1 cut(s)	809
BsaHI	GRCGYC	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	820
Bse1I	ACTGG	1 cut(s)	65
Bse8I	GATNNNNATC	1 cut(s)	809
BseDI	CCNNGG	1 cut(s)	26
BseJI	GATNNNNATC	1 cut(s)	809
BseLI	CCNNNNNNNGG	1 cut(s)	820
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	598
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	820
BsmAI	GTCTC	3 cut(s)	438, 486, 919
BsmBI	CGTCTC	1 cut(s)	919
BsnI	GGCC	1 cut(s)	31
Bso31I	GGTCTC	1 cut(s)	438
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp143I	GATC	7 cut(s)	118, 199, 217, 358, 592, 615, 918
Bsp68I	TCGCGA	1 cut(s)	222
BspACI	CCGC	2 cut(s)	7, 346
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	222
BspPI	GGATC	1 cut(s)	366
BspTI	CTTAAG	1 cut(s)	776
BspTNI	GGTCTC	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	7 cut(s)	118, 199, 217, 358, 592, 615, 918
BssNI	GRCGYC	1 cut(s)	408
Bst4CI	ACNGT	2 cut(s)	139, 913
Bst6I	CTCTTC	2 cut(s)	208, 468
BstACI	GRCGYC	1 cut(s)	408
BstAFI	CTTAAG	1 cut(s)	776
BstC8I	GCNNGC	1 cut(s)	449
BstDEI	CTNAG	2 cut(s)	144, 243
BstDSI	CCRYGG	1 cut(s)	26
BstFNI	CGCG	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	447
BstKTI	GATC	7 cut(s)	121, 202, 220, 361, 595, 618, 921
BstMAI	GTCTC	3 cut(s)	438, 486, 919
BstMBI	GATC	7 cut(s)	118, 199, 217, 358, 592, 615, 918
BstNSI	RCATGY	1 cut(s)	670
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	598
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BsuI	GTATCC	2 cut(s)	321, 353
BsuRI	GGCC	1 cut(s)	31
BtgI	CCRYGG	1 cut(s)	26
BtgZI	GCGATG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	447
BtuMI	TCGCGA	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	449
CfoI	GCGC	1 cut(s)	447
CviAII	CATG	3 cut(s)	596, 667, 717
CviJI	RGCY	8 cut(s)	19, 31, 247, 470, 511, 540, 589, 848
CviKI_1	RGCY	8 cut(s)	19, 31, 247, 470, 511, 540, 589, 848
DdeI	CTNAG	2 cut(s)	144, 243
DpnI	GATC	7 cut(s)	120, 201, 219, 360, 594, 617, 920
DpnII	GATC	7 cut(s)	118, 199, 217, 358, 592, 615, 918
EaeI	YGGCCR	1 cut(s)	29
Eam1104I	CTCTTC	2 cut(s)	208, 468
EarI	CTCTTC	2 cut(s)	208, 468
Eco31I	GGTCTC	1 cut(s)	438
Eco32I	GATATC	1 cut(s)	555
EcoRV	GATATC	1 cut(s)	555
Esp3I	CGTCTC	1 cut(s)	919
FaeI	CATG	3 cut(s)	599, 670, 720
FatI	CATG	3 cut(s)	595, 666, 716
FauNDI	CATATG	1 cut(s)	291
FbaI	TGATCA	1 cut(s)	592
FblI	GTMKAC	2 cut(s)	45, 731
Fnu4HI	GCNGC	1 cut(s)	587
Fsp4HI	GCNGC	1 cut(s)	587
FspBI	CTAG	4 cut(s)	39, 210, 255, 741
GlaI	GCGC	1 cut(s)	446
GluI	GCNGC	1 cut(s)	587
GsuI	CTGGAG	2 cut(s)	370, 881
HaeIII	GGCC	1 cut(s)	31
HhaI	GCGC	1 cut(s)	447
Hin1I	GRCGYC	1 cut(s)	408
Hin1II	CATG	3 cut(s)	599, 670, 720
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HinfI	GANTC	5 cut(s)	235, 286, 460, 733, 863
HphI	GGTGA	3 cut(s)	469, 610, 701
Hpy166II	GTNNAC	2 cut(s)	46, 732
Hpy188I	TCNGA	2 cut(s)	23, 406
Hpy188III	TCNNGA	6 cut(s)	74, 221, 266, 860, 890, 916
Hpy8I	GTNNAC	2 cut(s)	46, 732
Hpy99I	CGWCG	1 cut(s)	733
HpyAV	CCTTC	3 cut(s)	71, 483, 788
HpyCH4III	ACNGT	2 cut(s)	139, 913
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	7 cut(s)	101, 153, 227, 451, 499, 567, 586
HpyF3I	CTNAG	2 cut(s)	144, 243
HpySE526I	ACGT	1 cut(s)	408
Hsp92I	GRCGYC	1 cut(s)	408
Hsp92II	CATG	3 cut(s)	599, 670, 720
HspAI	GCGC	1 cut(s)	445
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	7 cut(s)	118, 199, 217, 358, 592, 615, 918
LmnI	GCTCC	3 cut(s)	24, 475, 772
LpnPI	CCDG	9 cut(s)	78, 87, 251, 310, 334, 571, 577, 806, 845
Lsp1109I	GCAGC	1 cut(s)	598
LweI	GCATC	3 cut(s)	140, 214, 387
MaeI	CTAG	4 cut(s)	39, 210, 255, 741
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	7 cut(s)	120, 201, 219, 360, 594, 617, 920
MboI	GATC	7 cut(s)	118, 199, 217, 358, 592, 615, 918
MboII	GAAGA	4 cut(s)	225, 360, 455, 713
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	9 cut(s)	171, 519, 525, 573, 781, 799, 826, 878, 904
MlyI	GAGTC	4 cut(s)	244, 454, 727, 872
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	3 cut(s)	187, 262, 596
MroXI	GAANNNNTTC	2 cut(s)	367, 644
MseI	TTAA	5 cut(s)	309, 522, 576, 777, 830
MspA1I	CMGCKG	1 cut(s)	348
MspCI	CTTAAG	1 cut(s)	776
MvnI	CGCG	1 cut(s)	222
NdeI	CATATG	1 cut(s)	291
NdeII	GATC	7 cut(s)	118, 199, 217, 358, 592, 615, 918
NlaIII	CATG	3 cut(s)	599, 670, 720
NmuCI	GTSAC	1 cut(s)	457
NruI	TCGCGA	1 cut(s)	222
NspI	RCATGY	1 cut(s)	670
PciI	ACATGT	1 cut(s)	666
PdmI	GAANNNNTTC	2 cut(s)	367, 644
PfeI	GAWTC	1 cut(s)	286
PflMI	CCANNNNNTGG	1 cut(s)	820
PkrI	GCNGC	1 cut(s)	588
PleI	GAGTC	4 cut(s)	243, 454, 727, 871
PpsI	GAGTC	4 cut(s)	243, 454, 727, 871
PscI	ACATGT	1 cut(s)	666
PsiI	TTATAA	1 cut(s)	897
PsuI	RGATCY	1 cut(s)	118
RruI	TCGCGA	1 cut(s)	222
SalI	GTCGAC	1 cut(s)	730
SaqAI	TTAA	5 cut(s)	309, 522, 576, 777, 830
SatI	GCNGC	1 cut(s)	587
Sau3AI	GATC	7 cut(s)	118, 199, 217, 358, 592, 615, 918
SchI	GAGTC	4 cut(s)	244, 454, 727, 872
SduI	GDGCHC	1 cut(s)	137
SfaNI	GCATC	3 cut(s)	140, 214, 387
SmlI	CTYRAG	1 cut(s)	776
SmoI	CTYRAG	1 cut(s)	776
Sse9I	AATT	9 cut(s)	171, 519, 525, 573, 781, 799, 826, 878, 904
SsiI	CCGC	2 cut(s)	7, 346
SspMI	CTAG	4 cut(s)	39, 210, 255, 741
TaaI	ACNGT	2 cut(s)	139, 913
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	6 cut(s)	108, 127, 361, 699, 731, 917
TasI	AATT	9 cut(s)	171, 519, 525, 573, 781, 799, 826, 878, 904
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	5 cut(s)	309, 522, 576, 777, 830
Tru9I	TTAA	5 cut(s)	309, 522, 576, 777, 830
TscAI	CASTG	1 cut(s)	447
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	1 cut(s)	586
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	4 cut(s)	93, 621, 821, 891
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	1 cut(s)	447
Van91I	CCANNNNNTGG	1 cut(s)	820
Vha464I	CTTAAG	1 cut(s)	776
XapI	RAATTY	4 cut(s)	781, 826, 878, 904
XceI	RCATGY	1 cut(s)	670
XmiI	GTMKAC	2 cut(s)	45, 731
XmnI	GAANNNNTTC	2 cut(s)	367, 644
XspI	CTAG	4 cut(s)	39, 210, 255, 741
ZraI	GACGTC	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.