Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004213

Physical Location & Seq

Genomic Coordinates Forward (+)

18189689 .. 18190057

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG104600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGATGCTGTGCAAGAAGTTATGGTCAGACAGATTTAGTAATCTTCCGGACGAACTTGCTCATCATATTCTTTCCTTCCTCGGTGTCAGAGATCTCGCTTCTGTAGGGGCTGTGTCCAAAAGGTGTAGAGAGTTTTACCTCTCAGTTCCATCAGTGAATATTGATGCAAGTTGTTATCTCCCAGTTCCATTAGTGAATCTTGATGCAAGTTGTTATCTAAAAACCAGCAGCAAGTTAGGAGCGCTGATGTGTTTCTGGGATAGATACAATTTCAGCGTGGTGTTAATAAGATGCAACGCTTTTACATTAATTGGACTTTCTTTACACGCGGCATTGCGAATAAAGACTCTGTGGAGCAATATCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

122

Amino Acids

13.77

Weight (kDa)

8.82

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	12 - 44	2.6e-08	F-box-like
F-box	PF00646	12 - 44	2.2e-07	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004213)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16170 FvH4_6g18953 FvH4_7g04740 FvH4_7g04740
malus_domestica	MD02G1269000.v1.1 MD04G1145300.v1.1 MD04G1145500.v1.1 MD04G1145600.v1.1 MD04G1145900.v1.1 MD12G1159100.v1.1
prunus_persica	Prupe.2G052100_v2.0.a1 Prupe.7G105700_v2.0.a1 Prupe.7G106400_v2.0.a1
pyrus_communis	pycom04g13150
rosa_chinensis	RchiOBHm_Chr1g0330111
rosa_laevigata	RLG00000029830
rosa_multiflora	Rmu_sc0004673.1_g000009
rosa_roxburghii	Rroxscaffold_4G00320200 Rroxscaffold_4G00320300 Rroxscaffold_4G00320320 Rroxscaffold_4G00320330
rosa_rugosa	Rorug01G0086000 Rorug01G0086100 Rorug01G0086200 Rorug02G0131100 Rorug03G0137300
rosa_samantha	Rh1AG104600 Rh1AG104700 Rh1BG082800 Rh1CG100200 Rh1DG107500 Rh1DG108500
rosa_wichuraiana	Rw0G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	329
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	1 cut(s)	329
AfeI	AGCGCT	1 cut(s)	243
Aor13HI	TCCGGA	1 cut(s)	46
Aor51HI	AGCGCT	1 cut(s)	243
ApeKI	GCWGC	1 cut(s)	228
AseI	ATTAAT	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	244
BbvI	GCAGC	1 cut(s)	240
BccI	CCATC	1 cut(s)	157
BfmI	CTRYAG	1 cut(s)	102
BfoI	RGCGCY	1 cut(s)	245
BglII	AGATCT	1 cut(s)	91
BisI	GCNGC	2 cut(s)	229, 330
BlsI	GCNGC	2 cut(s)	230, 331
BmrI	ACTGGG	1 cut(s)	176
BmsI	GCATC	3 cut(s)	154, 193, 281
BmuI	ACTGGG	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	79
BsaWI	WCCGGW	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	182
Bse3DI	GCAATG	1 cut(s)	332
BseAI	TCCGGA	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	79
BseMI	GCAATG	1 cut(s)	332
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	240
Bsh1236I	CGCG	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	47
Bsp13I	TCCGGA	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	91
BspACI	CCGC	1 cut(s)	329
BspCNI	CTCAG	1 cut(s)	155
BspEI	TCCGGA	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	332
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	142
BstFNI	CGCG	1 cut(s)	329
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstSFI	CTRYAG	1 cut(s)	102
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	159
CfoI	GCGC	1 cut(s)	244
CviJI	RGCY	1 cut(s)	110
CviKI_1	RGCY	1 cut(s)	110
DdeI	CTNAG	1 cut(s)	142
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
Eco47III	AGCGCT	1 cut(s)	243
FaiI	YATR	2 cut(s)	22, 66
Fnu4HI	GCNGC	2 cut(s)	229, 330
Fsp4HI	GCNGC	2 cut(s)	229, 330
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	2 cut(s)	229, 330
HaeII	RGCGCY	1 cut(s)	245
HapII	CCGG	1 cut(s)	47
HhaI	GCGC	1 cut(s)	244
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HinfI	GANTC	2 cut(s)	196, 346
HpaII	CCGG	1 cut(s)	47
Hpy188I	TCNGA	2 cut(s)	28, 89
Hpy188III	TCNNGA	2 cut(s)	47, 200
HpyAV	CCTTC	1 cut(s)	85
HpyCH4V	TGCA	4 cut(s)	12, 167, 206, 294
HpyF3I	CTNAG	1 cut(s)	142
HspAI	GCGC	1 cut(s)	242
Kpn2I	TCCGGA	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	2 cut(s)	239, 354
LpnPI	CCDG	4 cut(s)	60, 195, 238, 241
Lsp1109I	GCAGC	1 cut(s)	240
LweI	GCATC	3 cut(s)	154, 193, 281
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	1 cut(s)	35
MflI	RGATCY	1 cut(s)	91
MluCI	AATT	2 cut(s)	268, 309
MlyI	GAGTC	1 cut(s)	340
MnlI	CCTC	2 cut(s)	89, 149
MroI	TCCGGA	1 cut(s)	46
MseI	TTAA	2 cut(s)	284, 308
MspI	CCGG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	329
NdeII	GATC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	230, 331
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
PshBI	ATTAAT	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	91
SaqAI	TTAA	2 cut(s)	284, 308
SatI	GCNGC	2 cut(s)	229, 330
Sau3AI	GATC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	340
SetI	ASST	2 cut(s)	125, 141
SfaNI	GCATC	3 cut(s)	154, 193, 281
SfcI	CTRYAG	1 cut(s)	102
Sse9I	AATT	2 cut(s)	268, 309
SsiI	CCGC	1 cut(s)	329
SspI	AATATT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	363
TasI	AATT	2 cut(s)	268, 309
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	2 cut(s)	284, 308
Tru9I	TTAA	2 cut(s)	284, 308
TscAI	CASTG	1 cut(s)	159
TseI	GCWGC	1 cut(s)	228
TspRI	CASTG	1 cut(s)	159
VspI	ATTAAT	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.