Rorug01G0086000

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004213
Physical Location & Seq
Reverse (-)
13934010 .. 13936669
2660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0086000.1

Sequence Viewer

Length: 1644 bp
ATGCTCCTTTTGGCAAGACTCAAGAGTGGAACCAATCAATTTCAAACCCCTTTAAATCTAAAGTTTTCTCTTGTTTCCGCCGCTAAAGTATCCAGCCAATGTATATCGTCTGTAGAAACGGGTGTCGACATTGATAGGATTACTAAAATTATTAACAACCATCCATATCCTGATCAACCACTTCAACCAGCTCTTCTCCAGAATATCCCACCACCTCTTCTTTCTACCAGCTTTGTGGAGAATGTTCTTGGTCACCTTTTCGGTGCCCATTCCAATGGTCTTAAAGCTCTTGAGTTCTTCAATTATTCCCTCCATCATTCCCAGTTATGTCCAAGTTCAGATGCTTTTGAAAAGACGCTGCACATCCTTGCCAGGATGCGCTATTTTGATAAAGCGTGGGAGTTGATGGAGAAAATAAGTAGTATGCATCCTTCGTTGCTTACCCTGAAGTCGATGAGCATCATGCTGTCAAAAATCGCAAAGTTCCAATCCTATGAAGATGTCCTTGTAGCATTTGAAAAGATGGAGACTGATATTTTTGTTGGGAGGAAGTTCGGTACTGATGAGTTTAATGTACTTCTTAGAGCATTTTGCACACAAAGACAAATGAAGGAGGCACGCTCAGTTTTCATAAAGATGCATTCTCGGTTTTCACCCAACACCAAGACCATGAATATCTTGCTCTTGGGGTTCAAGGAAGCTGGAGATATTACTGCAGTAGAACTCTTTTACCATGAGCTTGCTAGAAGAGGCTTTAAGCCAAACAGTATAACTTATAATATTAGGATTGATGCTTACTGTAAAAGAGGTTGCTTTGCTGACGGTTTGAGGCTTTTTGAAGAAATGGAAAGGGCCAAATTGTCGCCTGCATTACAGACTATCACTACACTGATTCATGGAGCTGGGGTTGTTCGGAATCCAATTAAGGCACAACAGTTATTTGATGAGATTCATTTGAGAAATTTACTTCCTGATACTGGGGCTTATAATGCTTTAATGAGTTCACTTATTAGATCCAACGACGTGCAGTCGGCAGTTGCCTTGATGGATGAGATGGAAGGGAAGCATATTAAGCATGATCATATGACTTATCACACCATGTTTTCTGGCCTGATGAGAACATTGGGTTTTGAGGGGGCTTCTGATCTGTATTACAAAATGGTTGATAGAAATTTTGTGCCCAAAACACGAACAGTGGTGATATTAATTAAATTTTTCTGCGCAAATCATCAGCTTGATTTGGGTTTGCACTTGTGGCGATACCTAGTGGAGAAAGGATATTGCCCTCATGGTCATGCATTGGATCTTTTGTTAACAGCATTATGCTCCCGCAGTAGGGCAATAGAAGCTTTTGAGTGCTCCTTACAAATGTTGGAGAGAGGGAGGGATATGAGTGAAGCATCATTTCGGACATTAGAGACTTTTCTGCTTCAAGCTGGTGAGACAGACAAGCTGAATTCAATAGAAACAGATATTTACAGGTTGAGATGTAGAGAGCCATTTCTAATGGCTAAGGTCCTCGAGGCTTTGGATTGTACTCATGAGCAAAGCTGCCCTTCTAGTATGGGAAGTTGGTGGAACACCAGATTATATGGGATCATGAAACCTAGTTCTCAAGGCTTTGGATTTGTGTTTGAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

547

Amino Acids

62.35

Weight (kDa)

8.34

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 190 - 231 8.1e-07 PPR repeat family
PPR_2 PF13041 219 - 268 2e-10 PPR repeat family
PPR_1 PF12854 250 - 283 5e-08 PPR repeat
PPR_2 PF13041 254 - 300 8e-11 PPR repeat family
PPR PF01535 257 - 285 1.7e-06 PPR repeat
PPR_2 PF13041 324 - 372 1.2e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 777, 987
AbsI CCTCGAGG 1 cut(s) 1520
Acc16I TGCGCA 1 cut(s) 1222
AccB1I GGYRCC 1 cut(s) 263
AccI GTMKAC 1 cut(s) 126
AciI CCGC 3 cut(s) 78, 81, 1330
AclWI GGATC 3 cut(s) 1008, 1311, 1604
AcsI RAATTY 4 cut(s) 961, 1171, 1211, 1456
AcuI CTGAAG 1 cut(s) 467
AfaI GTAC 3 cut(s) 559, 576, 1537
AfiI CCNNNNNNNGG 3 cut(s) 977, 1335, 1336
AgsI TTSAA 9 cut(s) 44, 185, 301, 350, 518, 694, 839, 1433, 1461
AhdI GACNNNNNGTC 1 cut(s) 1027
AjiI CACGTC 1 cut(s) 1024
AjnI CCWGG 1 cut(s) 371
Alw21I GWGCWC 1 cut(s) 1361
Alw26I GTCTC 3 cut(s) 521, 1412, 1436
AlwI GGATC 3 cut(s) 1008, 1311, 1604
Ama87I CYCGRG 1 cut(s) 1520
AoxI GGCC 2 cut(s) 852, 1108
ApeKI GCWGC 2 cut(s) 358, 1551
ApoI RAATTY 4 cut(s) 961, 1171, 1211, 1456
AseI ATTAAT 1 cut(s) 1205
AspLEI GCGC 2 cut(s) 381, 1223
AspS9I GGNCC 2 cut(s) 852, 1516
AsuHPI GGTGA 4 cut(s) 245, 645, 1210, 1451
AvaI CYCGRG 1 cut(s) 1520
AvaII GGWCC 1 cut(s) 1516
BaeGI GKGCMC 2 cut(s) 268, 1182
BanI GGYRCC 1 cut(s) 263
BarI GAAGNNNNNNTAC 2 cut(s) 415, 447
Bbv12I GWGCWC 1 cut(s) 1361
BbvI GCAGC 2 cut(s) 345, 1538
BccI CCATC 6 cut(s) 168, 321, 400, 517, 1039, 1048
BciT130I CCWGG 1 cut(s) 373
BciVI GTATCC 1 cut(s) 100
BclI TGATCA 2 cut(s) 172, 1078
BcoDI GTCTC 3 cut(s) 521, 1412, 1436
BfaI CTAG 4 cut(s) 744, 1265, 1560, 1608
BfmI CTRYAG 2 cut(s) 111, 714
BfuI GTATCC 1 cut(s) 100
BisI GCNGC 3 cut(s) 81, 359, 1552
BlsI GCNGC 3 cut(s) 82, 360, 1553
Bme1390I CCNGG 1 cut(s) 373
Bme18I GGWCC 1 cut(s) 1516
BmeRI GACNNNNNGTC 1 cut(s) 1027
BmeT110I CYCGRG 1 cut(s) 1520
BmgBI CACGTC 1 cut(s) 1024
BmgT120I GGNCC 2 cut(s) 852, 1516
BmiI GGNNCC 2 cut(s) 31, 265
BmrFI CCNGG 1 cut(s) 373
BmrI ACTGGG 2 cut(s) 316, 987
BmsI GCATC 7 cut(s) 331, 366, 436, 468, 627, 781, 1409
BmuI ACTGGG 2 cut(s) 316, 987
BplI GAGNNNNNCTC 2 cut(s) 605, 637
BpmI CTGGAG 2 cut(s) 182, 723
Bpu10I CCTNAGC 1 cut(s) 1512
BpuEI CTTGAG 3 cut(s) 5, 311, 1599
BsaBI GATNNNNATC 1 cut(s) 458
BsaXI ACNNNNNCTCC 2 cut(s) 891, 921
Bsc4I CCNNNNNNNGG 3 cut(s) 977, 1335, 1336
Bse1I ACTGG 2 cut(s) 322, 982
Bse8I GATNNNNATC 1 cut(s) 458
BseBI CCWGG 1 cut(s) 373
BseGI GGATG 5 cut(s) 160, 363, 381, 427, 1054
BseJI GATNNNNATC 1 cut(s) 458
BseLI CCNNNNNNNGG 3 cut(s) 977, 1335, 1336
BseMII CTCAG 1 cut(s) 636
BseNI ACTGG 2 cut(s) 322, 982
BseSI GKGCMC 2 cut(s) 268, 1182
BseXI GCAGC 2 cut(s) 345, 1538
BseYI CCCAGC 1 cut(s) 902
BsgI GTGCAG 2 cut(s) 344, 1046
BshFI GGCC 2 cut(s) 854, 1110
BshNI GGYRCC 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 1361
BsiHKCI CYCGRG 1 cut(s) 1520
BslI CCNNNNNNNGG 3 cut(s) 977, 1335, 1336
BsmAI GTCTC 3 cut(s) 521, 1412, 1436
BsmI GAATGC 1 cut(s) 640
BsnI GGCC 2 cut(s) 854, 1110
BsoBI CYCGRG 1 cut(s) 1520
Bsp1286I GDGCHC 3 cut(s) 268, 1182, 1361
Bsp143I GATC 6 cut(s) 172, 1013, 1078, 1144, 1303, 1596
BspACI CCGC 3 cut(s) 78, 81, 1330
BspANI GGCC 2 cut(s) 854, 1110
BspCNI CTCAG 1 cut(s) 635
BspHI TCATGA 2 cut(s) 1540, 1599
BspLI GGNNCC 2 cut(s) 31, 265
BspMAI CTGCAG 1 cut(s) 718
BspPI GGATC 3 cut(s) 1008, 1311, 1604
BspQI GCTCTTC 1 cut(s) 198
BspT107I GGYRCC 1 cut(s) 263
BsrI ACTGG 2 cut(s) 322, 982
BssMI GATC 6 cut(s) 172, 1013, 1078, 1144, 1303, 1596
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 5 cut(s) 767, 800, 824, 936, 1195
Bst6I CTCTTC 3 cut(s) 198, 222, 742
BstC8I GCNNGC 3 cut(s) 619, 741, 867
BstDEI CTNAG 3 cut(s) 581, 622, 1512
BstEII GGTNACC 1 cut(s) 251
BstF5I GGATG 5 cut(s) 160, 363, 381, 427, 1054
BstHHI GCGC 2 cut(s) 381, 1223
BstKTI GATC 6 cut(s) 175, 1016, 1081, 1147, 1306, 1599
BstMAI GTCTC 3 cut(s) 521, 1412, 1436
BstMBI GATC 6 cut(s) 172, 1013, 1078, 1144, 1303, 1596
BstMWI GCNNNNNNNGC 4 cut(s) 989, 1072, 1255, 1346
BstNI CCWGG 1 cut(s) 373
BstPI GGTNACC 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 371
BstSFI CTRYAG 2 cut(s) 111, 714
BstSLI GKGCMC 2 cut(s) 268, 1182
BstV1I GCAGC 2 cut(s) 345, 1538
BstX2I RGATCY 2 cut(s) 1013, 1303
BstXI CCANNNNNNTGG 2 cut(s) 235, 275
BstYI RGATCY 2 cut(s) 1013, 1303
BsuI GTATCC 1 cut(s) 100
BsuRI GGCC 2 cut(s) 854, 1110
BtrI CACGTC 1 cut(s) 1024
BtsCI GGATG 5 cut(s) 160, 363, 381, 427, 1054
BtsIMutI CAGTG 2 cut(s) 887, 1200
Cac8I GCNNGC 3 cut(s) 619, 741, 867
CciI TCATGA 2 cut(s) 1540, 1599
CfoI GCGC 2 cut(s) 381, 1223
Cfr13I GGNCC 2 cut(s) 852, 1516
CseI GACGC 1 cut(s) 364
Csp6I GTAC 3 cut(s) 558, 575, 1536
CviQI GTAC 3 cut(s) 558, 575, 1536
DdeI CTNAG 3 cut(s) 581, 622, 1512
DpnI GATC 6 cut(s) 174, 1015, 1080, 1146, 1305, 1598
DpnII GATC 6 cut(s) 172, 1013, 1078, 1144, 1303, 1596
DraI TTTAAA 1 cut(s) 54
DriI GACNNNNNGTC 1 cut(s) 1027
Eam1104I CTCTTC 3 cut(s) 198, 222, 742
Eam1105I GACNNNNNGTC 1 cut(s) 1027
EarI CTCTTC 3 cut(s) 198, 222, 742
EciI GGCGGA 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 1516
Eco57I CTGAAG 1 cut(s) 467
Eco88I CYCGRG 1 cut(s) 1520
Eco91I GGTNACC 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 1516
EcoO65I GGTNACC 1 cut(s) 251
EcoRI GAATTC 1 cut(s) 1456
EcoRII CCWGG 1 cut(s) 371
EcoT22I ATGCAT 3 cut(s) 429, 642, 1300
FalI AAGNNNNNCTT 4 cut(s) 489, 521, 1540, 1572
FauI CCCGC 1 cut(s) 1337
FauNDI CATATG 1 cut(s) 1083
FbaI TGATCA 2 cut(s) 172, 1078
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 3 cut(s) 81, 359, 1552
FokI GGATG 5 cut(s) 147, 350, 388, 414, 1061
Fsp4HI GCNGC 3 cut(s) 81, 359, 1552
FspBI CTAG 4 cut(s) 744, 1265, 1560, 1608
FspI TGCGCA 1 cut(s) 1222
GlaI GCGC 2 cut(s) 380, 1222
GluI GCNGC 3 cut(s) 81, 359, 1552
GsaI CCCAGC 1 cut(s) 906
GsuI CTGGAG 2 cut(s) 182, 723
HaeIII GGCC 2 cut(s) 854, 1110
HgaI GACGC 1 cut(s) 364
HhaI GCGC 2 cut(s) 381, 1223
Hin6I GCGC 2 cut(s) 379, 1221
HinP1I GCGC 2 cut(s) 379, 1221
HincII GTYRAC 2 cut(s) 127, 1314
HindII GTYRAC 2 cut(s) 127, 1314
HindIII AAGCTT 1 cut(s) 1347
HinfI GANTC 4 cut(s) 18, 892, 916, 949
HpaI GTTAAC 1 cut(s) 1314
HphI GGTGA 4 cut(s) 245, 645, 1210, 1451
Hpy166II GTNNAC 3 cut(s) 127, 1004, 1314
Hpy188I TCNGA 4 cut(s) 340, 915, 1144, 1410
Hpy188III TCNNGA 7 cut(s) 22, 170, 199, 290, 971, 1541, 1600
Hpy8I GTNNAC 3 cut(s) 127, 1004, 1314
Hpy99I CGWCG 1 cut(s) 1025
HpyAV CCTTC 4 cut(s) 441, 604, 1052, 1566
HpyCH4III ACNGT 5 cut(s) 767, 800, 824, 936, 1195
HpyCH4IV ACGT 1 cut(s) 1023
HpyCH4V TGCA 9 cut(s) 361, 427, 594, 640, 716, 869, 1027, 1249, 1298
HpyF10VI GCNNNNNNNGC 4 cut(s) 989, 1072, 1255, 1346
HpyF3I CTNAG 3 cut(s) 581, 622, 1512
HpySE526I ACGT 1 cut(s) 1023
HspAI GCGC 2 cut(s) 379, 1221
Ksp22I TGATCA 2 cut(s) 172, 1078
KspAI GTTAAC 1 cut(s) 1314
Kzo9I GATC 6 cut(s) 172, 1013, 1078, 1144, 1303, 1596
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 4 cut(s) 9, 899, 1331, 1364
Lsp1109I GCAGC 2 cut(s) 345, 1538
LweI GCATC 7 cut(s) 331, 366, 436, 468, 627, 781, 1409
MaeI CTAG 4 cut(s) 744, 1265, 1560, 1608
MaeII ACGT 1 cut(s) 1023
MaeIII GTNAC 1 cut(s) 251
MalI GATC 6 cut(s) 174, 1015, 1080, 1146, 1305, 1598
MboI GATC 6 cut(s) 172, 1013, 1078, 1144, 1303, 1596
MboII GAAGA 6 cut(s) 185, 209, 289, 509, 759, 851
MflI RGATCY 2 cut(s) 1013, 1303
MhlI GDGCHC 3 cut(s) 268, 1182, 1361
MlyI GAGTC 1 cut(s) 12
MmeI TCCRAC 2 cut(s) 1041, 1353
Mph1103I ATGCAT 3 cut(s) 429, 642, 1300
MslI CAYNNNNRTG 3 cut(s) 273, 635, 1293
MspR9I CCNGG 1 cut(s) 373
Mva1269I GAATGC 1 cut(s) 640
MvaI CCWGG 1 cut(s) 373
MwoI GCNNNNNNNGC 4 cut(s) 989, 1072, 1255, 1346
NdeI CATATG 1 cut(s) 1083
NdeII GATC 6 cut(s) 172, 1013, 1078, 1144, 1303, 1596
NlaIV GGNNCC 2 cut(s) 31, 265
NmuCI GTSAC 1 cut(s) 251
NsbI TGCGCA 1 cut(s) 1222
NsiI ATGCAT 3 cut(s) 429, 642, 1300
PacI TTAATTAA 1 cut(s) 1209
PaeR7I CTCGAG 1 cut(s) 1520
PagI TCATGA 2 cut(s) 1540, 1599
PciSI GCTCTTC 1 cut(s) 198
PctI GAATGC 1 cut(s) 640
PfeI GAWTC 3 cut(s) 892, 916, 949
PkrI GCNGC 3 cut(s) 82, 360, 1553
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PpuMI RGGWCCY 1 cut(s) 1516
PshBI ATTAAT 1 cut(s) 1205
PsiI TTATAA 2 cut(s) 777, 987
Psp5II RGGWCCY 1 cut(s) 1516
Psp6I CCWGG 1 cut(s) 371
PspEI GGTNACC 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 902
PspGI CCWGG 1 cut(s) 371
PspN4I GGNNCC 2 cut(s) 31, 265
PspPI GGNCC 2 cut(s) 852, 1516
PspPPI RGGWCCY 1 cut(s) 1516
PspXI VCTCGAGB 1 cut(s) 1520
PstI CTGCAG 1 cut(s) 718
PsuI RGATCY 2 cut(s) 1013, 1303
RsaI GTAC 3 cut(s) 559, 576, 1537
RsaNI GTAC 3 cut(s) 558, 575, 1536
RseI CAYNNNNRTG 3 cut(s) 273, 635, 1293
SalI GTCGAC 1 cut(s) 125
SapI GCTCTTC 1 cut(s) 198
SatI GCNGC 3 cut(s) 81, 359, 1552
Sau3AI GATC 6 cut(s) 172, 1013, 1078, 1144, 1303, 1596
Sau96I GGNCC 2 cut(s) 852, 1516
SchI GAGTC 1 cut(s) 12
ScrFI CCNGG 1 cut(s) 373
SduI GDGCHC 3 cut(s) 268, 1182, 1361
SfaNI GCATC 7 cut(s) 331, 366, 436, 468, 627, 781, 1409
SfcI CTRYAG 2 cut(s) 111, 714
Sfr274I CTCGAG 1 cut(s) 1520
SinI GGWCC 1 cut(s) 1516
SlaI CTCGAG 1 cut(s) 1520
SmiMI CAYNNNNRTG 3 cut(s) 273, 635, 1293
SmlI CTYRAG 4 cut(s) 20, 290, 1520, 1614
SmoI CTYRAG 4 cut(s) 20, 290, 1520, 1614
SsiI CCGC 3 cut(s) 78, 81, 1330
SspI AATATT 1 cut(s) 781
SspMI CTAG 4 cut(s) 744, 1265, 1560, 1608
StyD4I CCNGG 1 cut(s) 371
TaaI ACNGT 5 cut(s) 767, 800, 824, 936, 1195
TaiI ACGT 1 cut(s) 1026
TaqI TCGA 3 cut(s) 126, 452, 1521
TatI WGTACW 2 cut(s) 574, 1535
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 3 cut(s) 892, 916, 949
TscAI CASTG 2 cut(s) 894, 1200
TseFI GTSAC 1 cut(s) 251
TseI GCWGC 2 cut(s) 358, 1551
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 7 cut(s) 510, 619, 623, 686, 884, 941, 1616
TspRI CASTG 2 cut(s) 894, 1200
VpaK11BI GGWCC 1 cut(s) 1516
VspI ATTAAT 1 cut(s) 1205
XapI RAATTY 4 cut(s) 961, 1171, 1211, 1456
XhoI CTCGAG 1 cut(s) 1520
XmiI GTMKAC 1 cut(s) 126
XspI CTAG 4 cut(s) 744, 1265, 1560, 1608
Zsp2I ATGCAT 3 cut(s) 429, 642, 1300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.