Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004673.1

Orthogroup ID

OG0004213

Physical Location & Seq

Genomic Coordinates Forward (+)

38686 .. 40633

Gene Structure 1948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004673.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

atgctgtgcaagaagttgtggtcagacagatttagtaatcttccggacgaacttgctcatcatattctttccttcctcggtgtcagagatctcgcttctgtaggggctgtgtccaaaaggtgtagagaattttacctctcagttccatcagtgaatattgatgcaagttgttatctcccagttccattagtgaatcttgatgcaagttgttatctaaaaaccagcagcaagttaggagcgctgatgtgtttctgggatagatacatgtttcagcgtggtgttaataagatgcaacgcttttacattaattggactttctttacacgcggcattgcgaataaagactctgtggagcaagatcgaataaactcttggattcataacgcagtaaggtgtaatgttgaagagcttaaccttattttcacatcatgtggtggattatcgtttgtgctgccatcttgcctatatcagtcacaatctttcaagtctctagtattaaaatgcttggataagatgactcttgaagcaccaccagtatctctttcctgcaatctccgttacttgcagttgacttctgttagaatagcagatgaaaagttttgcaagtggatctcctctagctgcaaatgcattaagaaattacagcttattcaagttaaagggattaaaaatattaccattcaaagctcgtctttggagtcatttacttttgttggtatggacctggtcgaccttaatatctcctgtcagaaacttagaagtattaaaataaagtggaacttttatgcttcacctgggtaccgctcatcgaatatatctgctccaaatctggaagatttaacatgggtgggcaaggtcttgaatagccaaaacctgggcaaattactgaatttaaaaagagctttcattgctcttgagcctacggtagatgacaatttatctgaggtcttttctagtatatgtaggactaaagatcttggtataaatgagaacaccatgaaggctatgttcaaagattgtttcatgcaagcaccattagatgacattcgtcgcctgggtcttgttcaacttacgagcttcagtaatgacatagttccaataacggcctctcttctcagaagaactggttatctgaataccttggtactgatgagttctaaaccttctagatcggactctaaatctatatcttcatctggatttgatatgggatactggaaattgcaaaacctcactttcatttaccagctgaaggatgtgagaatagacctctccagcgggtctaatgaaattgagtttgcaaagtacattctcgaaaatgctccgaatttgaagaagatcgtgatccgtcatcatccgggatcccaacaatcaaatatcgtggtagggaaggtgaccagatgcaagatcatttcgagagccattattgtgatccaggaaattcggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

482

Amino Acids

54.63

Weight (kDa)

9.33

Isoelectric Point (pI)

51.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004213)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16170 FvH4_6g18953 FvH4_7g04740 FvH4_7g04740
malus_domestica	MD02G1269000.v1.1 MD04G1145300.v1.1 MD04G1145500.v1.1 MD04G1145600.v1.1 MD04G1145900.v1.1 MD12G1159100.v1.1
prunus_persica	Prupe.2G052100_v2.0.a1 Prupe.7G105700_v2.0.a1 Prupe.7G106400_v2.0.a1
pyrus_communis	pycom04g13150
rosa_chinensis	RchiOBHm_Chr1g0330111
rosa_laevigata	RLG00000029830
rosa_multiflora	Rmu_sc0004673.1_g000009
rosa_roxburghii	Rroxscaffold_4G00320200 Rroxscaffold_4G00320300 Rroxscaffold_4G00320320 Rroxscaffold_4G00320330
rosa_rugosa	Rorug01G0086000 Rorug01G0086100 Rorug01G0086200 Rorug02G0131100 Rorug03G0137300
rosa_samantha	Rh1AG104600 Rh1AG104700 Rh1BG082800 Rh1CG100200 Rh1DG107500 Rh1DG108500
rosa_wichuraiana	Rw0G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	798
AccB1I	GGYRCC	1 cut(s)	798
AccB7I	CCANNNNNTGG	1 cut(s)	874
AccBSI	CCGCTC	1 cut(s)	804
AccI	GTMKAC	1 cut(s)	729
AccII	CGCG	1 cut(s)	327
AccIII	TCCGGA	1 cut(s)	43
AciI	CCGC	3 cut(s)	327, 802, 1278
AclWI	GGATC	5 cut(s)	617, 1339, 1356, 1369, 1426
AcsI	RAATTY	4 cut(s)	128, 889, 1327, 1440
AcuI	CTGAAG	2 cut(s)	1063, 1271
AfaI	GTAC	3 cut(s)	800, 1146, 1307
AfeI	AGCGCT	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	874, 1252
AflIII	ACRYGT	1 cut(s)	264
AgsI	TTSAA	9 cut(s)	404, 484, 524, 653, 683, 862, 1012, 1067, 1333
AjnI	CCWGG	5 cut(s)	723, 793, 873, 1053, 1434
AjuI	GAANNNNNNNTTGG	2 cut(s)	355, 387
AluBI	AGCT	7 cut(s)	409, 621, 646, 687, 902, 1077, 1249
AluI	AGCT	7 cut(s)	409, 621, 646, 687, 902, 1077, 1249
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	5 cut(s)	617, 1339, 1356, 1369, 1426
Aor13HI	TCCGGA	1 cut(s)	43
Aor51HI	AGCGCT	1 cut(s)	240
AoxI	GGCC	1 cut(s)	1104
ApeKI	GCWGC	3 cut(s)	225, 451, 621
ApoI	RAATTY	4 cut(s)	128, 889, 1327, 1440
AseI	ATTAAT	1 cut(s)	306
Asp718I	GGTACC	1 cut(s)	798
AspLEI	GCGC	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	721
AsuC2I	CCSGG	1 cut(s)	1359
AsuHPI	GGTGA	2 cut(s)	783, 1405
AvaII	GGWCC	1 cut(s)	721
BaeI	ACNNNNGTAYC	2 cut(s)	782, 815
BamHI	GGATCC	1 cut(s)	1361
BanI	GGYRCC	1 cut(s)	798
BbvI	GCAGC	3 cut(s)	237, 438, 608
BccI	CCATC	2 cut(s)	154, 463
BceAI	ACGGC	1 cut(s)	1119
BciT130I	CCWGG	5 cut(s)	725, 795, 875, 1055, 1436
BciVI	GTATCC	1 cut(s)	1205
BcnI	CCSGG	1 cut(s)	1359
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	4 cut(s)	491, 618, 954, 1167
BfmI	CTRYAG	1 cut(s)	99
BfoI	RGCGCY	1 cut(s)	242
BfuI	GTATCC	1 cut(s)	1205
BglII	AGATCT	2 cut(s)	88, 973
BisI	GCNGC	4 cut(s)	226, 328, 452, 622
BlsI	GCNGC	4 cut(s)	227, 329, 453, 623
Bme1390I	CCNGG	6 cut(s)	725, 795, 875, 1055, 1359, 1436
Bme18I	GGWCC	1 cut(s)	721
BmgT120I	GGNCC	1 cut(s)	721
BmiI	GGNNCC	2 cut(s)	800, 1363
BmrFI	CCNGG	6 cut(s)	725, 795, 875, 1055, 1359, 1436
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	4 cut(s)	151, 190, 279, 1391
BmuI	ACTGGG	1 cut(s)	173
BoxI	GACNNNNGTC	1 cut(s)	1047
BpmI	CTGGAG	1 cut(s)	1258
BpuEI	CTTGAG	1 cut(s)	935
BpuMI	CCSGG	1 cut(s)	1359
BsaBI	GATNNNNATC	1 cut(s)	1343
BsaJI	CCNNGG	5 cut(s)	76, 794, 874, 1054, 1140
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	2 cut(s)	874, 1252
Bse1I	ACTGG	4 cut(s)	179, 533, 1129, 1220
Bse3DI	GCAATG	2 cut(s)	330, 906
Bse8I	GATNNNNATC	1 cut(s)	1343
BseAI	TCCGGA	1 cut(s)	43
BseBI	CCWGG	5 cut(s)	725, 795, 875, 1055, 1436
BseDI	CCNNGG	5 cut(s)	76, 794, 874, 1054, 1140
BseGI	GGATG	2 cut(s)	1261, 1354
BseJI	GATNNNNATC	1 cut(s)	1343
BseLI	CCNNNNNNNGG	2 cut(s)	874, 1252
BseMI	GCAATG	2 cut(s)	330, 906
BseMII	CTCAG	3 cut(s)	153, 933, 1129
BseNI	ACTGG	4 cut(s)	179, 533, 1129, 1220
BseRI	GAGGAG	1 cut(s)	604
BseXI	GCAGC	3 cut(s)	237, 438, 608
Bsh1236I	CGCG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	1106
BshNI	GGYRCC	1 cut(s)	798
BsiSI	CCGG	2 cut(s)	44, 1358
BslI	CCNNNNNNNGG	2 cut(s)	874, 1252
BsmAI	GTCTC	1 cut(s)	492
BsnI	GGCC	1 cut(s)	1106
Bsp13I	TCCGGA	1 cut(s)	43
BspACI	CCGC	3 cut(s)	327, 802, 1278
BspANI	GGCC	1 cut(s)	1106
BspCNI	CTCAG	3 cut(s)	152, 934, 1128
BspEI	TCCGGA	1 cut(s)	43
BspFNI	CGCG	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	800, 1363
BspPI	GGATC	5 cut(s)	617, 1339, 1356, 1369, 1426
BspQI	GCTCTTC	1 cut(s)	399
BspT107I	GGYRCC	1 cut(s)	798
BsrBI	CCGCTC	1 cut(s)	804
BsrDI	GCAATG	2 cut(s)	330, 906
BsrI	ACTGG	4 cut(s)	179, 533, 1129, 1220
BssECI	CCNNGG	5 cut(s)	76, 794, 874, 1054, 1140
BssT1I	CCWWGG	1 cut(s)	1140
Bst2UI	CCWGG	5 cut(s)	725, 795, 875, 1055, 1436
Bst4CI	ACNGT	1 cut(s)	925
Bst6I	CTCTTC	2 cut(s)	399, 1116
BstC8I	GCNNGC	1 cut(s)	1029
BstDEI	CTNAG	4 cut(s)	139, 755, 942, 1115
BstEII	GGTNACC	1 cut(s)	1393
BstF5I	GGATG	2 cut(s)	1261, 1354
BstFNI	CGCG	1 cut(s)	327
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	492
BstMWI	GCNNNNNNNGC	2 cut(s)	627, 908
BstNI	CCWGG	5 cut(s)	725, 795, 875, 1055, 1436
BstNSI	RCATGY	1 cut(s)	268
BstPAI	GACNNNNGTC	1 cut(s)	1047
BstPI	GGTNACC	1 cut(s)	1393
BstSCI	CCNGG	6 cut(s)	723, 793, 873, 1053, 1357, 1434
BstSFI	CTRYAG	1 cut(s)	99
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	3 cut(s)	237, 438, 608
BstX2I	RGATCY	4 cut(s)	88, 609, 973, 1361
BstYI	RGATCY	4 cut(s)	88, 609, 973, 1361
BsuI	GTATCC	1 cut(s)	1205
BsuRI	GGCC	1 cut(s)	1106
BtsCI	GGATG	2 cut(s)	1261, 1354
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	1029
CfoI	GCGC	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	721
CsiI	ACCWGGT	1 cut(s)	723
Csp6I	GTAC	3 cut(s)	799, 1145, 1306
CspCI	CAANNNNNGTGG	2 cut(s)	1362, 1397
CviAII	CATG	5 cut(s)	265, 429, 843, 997, 1024
CviQI	GTAC	3 cut(s)	799, 1145, 1306
DdeI	CTNAG	4 cut(s)	139, 755, 942, 1115
DraI	TTTAAA	1 cut(s)	894
Eam1104I	CTCTTC	2 cut(s)	399, 1116
EarI	CTCTTC	2 cut(s)	399, 1116
Eco130I	CCWWGG	1 cut(s)	1140
Eco47I	GGWCC	1 cut(s)	721
Eco47III	AGCGCT	1 cut(s)	240
Eco57I	CTGAAG	2 cut(s)	1063, 1271
Eco91I	GGTNACC	1 cut(s)	1393
EcoO65I	GGTNACC	1 cut(s)	1393
EcoRII	CCWGG	5 cut(s)	723, 793, 873, 1053, 1434
EcoT14I	CCWWGG	1 cut(s)	1140
EcoT22I	ATGCAT	1 cut(s)	632
ErhI	CCWWGG	1 cut(s)	1140
FaeI	CATG	5 cut(s)	268, 432, 846, 1000, 1027
FalI	AAGNNNNNCTT	4 cut(s)	676, 708, 764, 796
FatI	CATG	5 cut(s)	264, 428, 842, 996, 1023
FauI	CCCGC	1 cut(s)	1271
FblI	GTMKAC	1 cut(s)	729
Fnu4HI	GCNGC	4 cut(s)	226, 328, 452, 622
FokI	GGATG	2 cut(s)	1268, 1341
Fsp4HI	GCNGC	4 cut(s)	226, 328, 452, 622
FspBI	CTAG	4 cut(s)	491, 618, 954, 1167
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	4 cut(s)	226, 328, 452, 622
GsuI	CTGGAG	1 cut(s)	1258
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	1106
HapII	CCGG	2 cut(s)	44, 1358
HhaI	GCGC	1 cut(s)	241
Hin1II	CATG	5 cut(s)	268, 432, 846, 1000, 1027
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HincII	GTYRAC	2 cut(s)	570, 730
HindII	GTYRAC	2 cut(s)	570, 730
HinfI	GANTC	6 cut(s)	193, 344, 376, 517, 698, 1175
HpaII	CCGG	2 cut(s)	44, 1358
HphI	GGTGA	2 cut(s)	783, 1405
Hpy166II	GTNNAC	2 cut(s)	570, 730
Hpy188I	TCNGA	8 cut(s)	25, 86, 750, 943, 1118, 1134, 1174, 1326
Hpy8I	GTNNAC	2 cut(s)	570, 730
Hpy99I	CGWCG	1 cut(s)	1053
HpyAV	CCTTC	5 cut(s)	82, 994, 1173, 1246, 1384
HpyCH4III	ACNGT	1 cut(s)	925
HpyF10VI	GCNNNNNNNGC	2 cut(s)	627, 908
HpyF3I	CTNAG	4 cut(s)	139, 755, 942, 1115
Hsp92II	CATG	5 cut(s)	268, 432, 846, 1000, 1027
HspAI	GCGC	1 cut(s)	239
Kpn2I	TCCGGA	1 cut(s)	43
KpnI	GGTACC	1 cut(s)	802
LguI	GCTCTTC	1 cut(s)	399
LmnI	GCTCC	4 cut(s)	236, 352, 826, 1327
Lsp1109I	GCAGC	3 cut(s)	237, 438, 608
LweI	GCATC	4 cut(s)	151, 190, 279, 1391
MabI	ACCWGGT	1 cut(s)	723
MaeI	CTAG	4 cut(s)	491, 618, 954, 1167
MaeIII	GTNAC	3 cut(s)	471, 557, 1393
MbiI	CCGCTC	1 cut(s)	804
MboII	GAAGA	8 cut(s)	32, 416, 845, 1103, 1131, 1182, 1345, 1348
MflI	RGATCY	4 cut(s)	88, 609, 973, 1361
MlyI	GAGTC	4 cut(s)	338, 511, 707, 1169
MnlI	CCTC	7 cut(s)	86, 146, 625, 937, 1117, 1241, 1280
Mph1103I	ATGCAT	1 cut(s)	632
MroI	TCCGGA	1 cut(s)	43
MslI	CAYNNNNRTG	1 cut(s)	1427
MspA1I	CMGCKG	2 cut(s)	1249, 1278
MspI	CCGG	2 cut(s)	44, 1358
MspR9I	CCNGG	6 cut(s)	725, 795, 875, 1055, 1359, 1436
MvaI	CCWGG	5 cut(s)	725, 795, 875, 1055, 1436
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	2 cut(s)	627, 908
NciI	CCSGG	1 cut(s)	1359
NlaIII	CATG	5 cut(s)	268, 432, 846, 1000, 1027
NlaIV	GGNNCC	2 cut(s)	800, 1363
NmuCI	GTSAC	2 cut(s)	471, 1393
NsiI	ATGCAT	1 cut(s)	632
NspI	RCATGY	1 cut(s)	268
PciI	ACATGT	1 cut(s)	264
PciSI	GCTCTTC	1 cut(s)	399
PfeI	GAWTC	2 cut(s)	193, 376
PflFI	GACNNNGTC	1 cut(s)	725
PflMI	CCANNNNNTGG	1 cut(s)	874
PfoI	TCCNGGA	2 cut(s)	1357, 1434
PkrI	GCNGC	4 cut(s)	227, 329, 453, 623
PleI	GAGTC	4 cut(s)	338, 511, 706, 1169
PpsI	GAGTC	4 cut(s)	338, 511, 706, 1169
PscI	ACATGT	1 cut(s)	264
PshAI	GACNNNNGTC	1 cut(s)	1047
PshBI	ATTAAT	1 cut(s)	306
Psp6I	CCWGG	5 cut(s)	723, 793, 873, 1053, 1434
PspEI	GGTNACC	1 cut(s)	1393
PspGI	CCWGG	5 cut(s)	723, 793, 873, 1053, 1434
PspN4I	GGNNCC	2 cut(s)	800, 1363
PspPI	GGNCC	1 cut(s)	721
PsuI	RGATCY	4 cut(s)	88, 609, 973, 1361
PsyI	GACNNNGTC	1 cut(s)	725
PvuII	CAGCTG	1 cut(s)	1249
RsaI	GTAC	3 cut(s)	800, 1146, 1307
RsaNI	GTAC	3 cut(s)	799, 1145, 1306
RseI	CAYNNNNRTG	1 cut(s)	1427
SalI	GTCGAC	1 cut(s)	728
SapI	GCTCTTC	1 cut(s)	399
SatI	GCNGC	4 cut(s)	226, 328, 452, 622
Sau96I	GGNCC	1 cut(s)	721
SchI	GAGTC	4 cut(s)	338, 511, 707, 1169
ScrFI	CCNGG	6 cut(s)	725, 795, 875, 1055, 1359, 1436
SexAI	ACCWGGT	1 cut(s)	723
SfaNI	GCATC	4 cut(s)	151, 190, 279, 1391
SfcI	CTRYAG	1 cut(s)	99
SinI	GGWCC	1 cut(s)	721
SmiMI	CAYNNNNRTG	1 cut(s)	1427
SmlI	CTYRAG	1 cut(s)	914
SmoI	CTYRAG	1 cut(s)	914
SsiI	CCGC	3 cut(s)	327, 802, 1278
SspI	AATATT	2 cut(s)	157, 673
SspMI	CTAG	4 cut(s)	491, 618, 954, 1167
StyD4I	CCNGG	6 cut(s)	723, 793, 873, 1053, 1357, 1434
StyI	CCWWGG	1 cut(s)	1140
TaaI	ACNGT	1 cut(s)	925
TaqI	TCGA	5 cut(s)	361, 729, 809, 1314, 1415
TatI	WGTACW	1 cut(s)	1305
TauI	GCSGC	1 cut(s)	330
TfiI	GAWTC	2 cut(s)	193, 376
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	2 cut(s)	471, 1393
TseI	GCWGC	3 cut(s)	225, 451, 621
Tsp45I	GTSAC	2 cut(s)	471, 1393
TspDTI	ATGAA	8 cut(s)	368, 606, 895, 1012, 1013, 1182, 1228, 1302
TspGWI	ACGGA	2 cut(s)	545, 1337
TspRI	CASTG	1 cut(s)	156
Tth111I	GACNNNGTC	1 cut(s)	725
Van91I	CCANNNNNTGG	1 cut(s)	874
VpaK11BI	GGWCC	1 cut(s)	721
VspI	ATTAAT	1 cut(s)	306
XapI	RAATTY	4 cut(s)	128, 889, 1327, 1440
XbaI	TCTAGA	1 cut(s)	1166
XceI	RCATGY	1 cut(s)	268
XmiI	GTMKAC	1 cut(s)	729
XspI	CTAG	4 cut(s)	491, 618, 954, 1167
Zsp2I	ATGCAT	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.