Rh1BG082800

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0004213
Physical Location & Seq
Forward (+)
12997510 .. 13000405
2896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG082800.1

Sequence Viewer

Length: 1269 bp
ATGATGTTGTGCAAGAAGTTACGGTCAGACAGATTTAGTAATCTTCCGGACGACGTTGCTCATCATATTCTGTCCTTCCTCGGTGTCAGAGATCTCGCTTCTATAGGGGCTGTGTCCAAAAGGTGTAGAGAATTTTACCTCTCAGTTCCATCAGTGAATATTGATGCAAGTTGTGATCTCCCAGTTCCATTAGTGAATCTTGATGCAAGTTGTTATCTAAAAACCAGCAGCAAGTTAGGAGCGCTGATGTGTTTCTGGGATAGATACATGTTTCAGCGTGGTGTTAATAAGATGCAACGCTTTTACATTAATTGGACTTTCTTTACACGCGGCATTGCGAATAAAGACTCTGTGGAGCAATATCGAATAAACTCTTGGATTCATAACGCAGTAAGGTGTAATGTTGAAGAGCTTAACCTTAATTTCACAGCATGTGGTGGATTCACGTTTGTGCTGCCATCTTGCCTATATCAGTCACAATCTTTCAAGTCTCTAGTATTAAAATGCTTGGATAAGATGACTCTTGAAGCACCACCAGTATCTCTTTCCTGCAATCTCCGTTACTTGCAGTTGACTTCTGTTAGAATAGCAGATGAAAAGTTTTGCAAGTGGATCTCCTCTAGCTGCAAATGCATTAAGGAATTACAGCTTATTCAAGTTAAAGGGATTAAAAATATTACCATTCAAAGCTCGTCTTTGGAGTCATTTACTTTTGTTGGTATGGACCTGGTCGACCTTAATATCTCCGGTCAGAAGCTTAGAAGTATTGAAATAAAGTGGAACTTTTATTCTTCACCTGGGTACTGCTCATTGAATATATCTGCTCCAAATCTGGAAGATTTAACATGGGCGGGCAAGGTCTTGAATAGCCAAAATCTGGGCAAATTACTGAATTTAAAAAGAGCTTTCATTGCTCTTGAGCCTACGGTAGATGACAATTTATCTGAGGTCTTTTCTAGTATATGTAGGACTAAAGATCTTGGTATAAATGAGAACACCATGAAGGTAAACCGACACTACCCTTTAACTTCCAGTACAATTTGGAATATCTTTCAAAAGGATATTATGCCTTATATTAATCTTATGGCTTTTGAAATTTTTGATAATAATGGTAATGGCATTGATGTGTACATATTGGCGAAACCCAACGTTGGAAATGCCATTTATGTAGAACTTTATTTTTGTTTGAATGTACATTCTTTTTTTGGAGGTGTAATGTATAGTCTAGTTTTAAGGCGTATAGTAAGTATTGGCGAAACATTTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

422

Amino Acids

47.97

Weight (kDa)

8.68

Isoelectric Point (pI)

52.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 12 - 44 9.1e-07 F-box domain
F-box-like PF12937 12 - 44 1.6e-06 F-box-like
LRR_At1g61320_AtMIF1 PF23622 112 - 330 2.5e-10 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 124 - 249 8.5e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 877
AccI GTMKAC 1 cut(s) 732
AccII CGCG 1 cut(s) 330
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 2 cut(s) 330, 851
AclI AACGTT 1 cut(s) 1149
AclWI GGATC 1 cut(s) 620
AcsI RAATTY 3 cut(s) 131, 892, 1095
AfaI GTAC 4 cut(s) 803, 1036, 1130, 1194
AfeI AGCGCT 1 cut(s) 243
AfiI CCNNNNNNNGG 2 cut(s) 877, 1151
AflIII ACRYGT 1 cut(s) 267
AjnI CCWGG 2 cut(s) 726, 796
AjuI GAANNNNNNNTTGG 2 cut(s) 358, 390
AleI CACNNNNGTG 1 cut(s) 449
AluBI AGCT 6 cut(s) 412, 624, 649, 690, 757, 905
AluI AGCT 6 cut(s) 412, 624, 649, 690, 757, 905
Alw26I GTCTC 1 cut(s) 495
AlwI GGATC 1 cut(s) 620
Aor13HI TCCGGA 1 cut(s) 46
Aor51HI AGCGCT 1 cut(s) 243
ApeKI GCWGC 3 cut(s) 228, 454, 624
ApoI RAATTY 3 cut(s) 131, 892, 1095
AseI ATTAAT 2 cut(s) 309, 1077
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 1 cut(s) 724
AsuHPI GGTGA 1 cut(s) 786
AvaII GGWCC 1 cut(s) 724
BbvI GCAGC 3 cut(s) 240, 441, 611
BccI CCATC 2 cut(s) 157, 466
BciT130I CCWGG 2 cut(s) 728, 798
BcoDI GTCTC 1 cut(s) 495
BfaI CTAG 4 cut(s) 494, 621, 957, 1226
BfmI CTRYAG 1 cut(s) 102
BfoI RGCGCY 1 cut(s) 245
BglII AGATCT 2 cut(s) 91, 976
BisI GCNGC 4 cut(s) 229, 331, 455, 625
BlsI GCNGC 4 cut(s) 230, 332, 456, 626
Bme1390I CCNGG 2 cut(s) 728, 798
Bme18I GGWCC 1 cut(s) 724
BmgT120I GGNCC 1 cut(s) 724
BmrFI CCNGG 2 cut(s) 728, 798
BmrI ACTGGG 1 cut(s) 176
BmsI GCATC 3 cut(s) 154, 193, 282
BmuI ACTGGG 1 cut(s) 176
BpuEI CTTGAG 1 cut(s) 938
BsaJI CCNNGG 2 cut(s) 79, 797
BsaWI WCCGGW 2 cut(s) 46, 746
Bsc4I CCNNNNNNNGG 2 cut(s) 877, 1151
Bse1I ACTGG 3 cut(s) 182, 536, 1032
Bse3DI GCAATG 2 cut(s) 333, 909
BseAI TCCGGA 1 cut(s) 46
BseBI CCWGG 2 cut(s) 728, 798
BseDI CCNNGG 2 cut(s) 79, 797
BseLI CCNNNNNNNGG 2 cut(s) 877, 1151
BseMI GCAATG 2 cut(s) 333, 909
BseMII CTCAG 2 cut(s) 156, 936
BseNI ACTGG 3 cut(s) 182, 536, 1032
BseRI GAGGAG 1 cut(s) 607
BseXI GCAGC 3 cut(s) 240, 441, 611
Bsh1236I CGCG 1 cut(s) 330
BsiSI CCGG 2 cut(s) 47, 747
BslI CCNNNNNNNGG 2 cut(s) 877, 1151
BsmAI GTCTC 1 cut(s) 495
Bsp13I TCCGGA 1 cut(s) 46
Bsp1407I TGTACA 2 cut(s) 1128, 1192
Bsp143I GATC 4 cut(s) 91, 175, 612, 976
BspACI CCGC 2 cut(s) 330, 851
BspCNI CTCAG 2 cut(s) 155, 937
BspEI TCCGGA 1 cut(s) 46
BspFNI CGCG 1 cut(s) 330
BspPI GGATC 1 cut(s) 620
BspQI GCTCTTC 1 cut(s) 402
BsrDI GCAATG 2 cut(s) 333, 909
BsrGI TGTACA 2 cut(s) 1128, 1192
BsrI ACTGG 3 cut(s) 182, 536, 1032
BssECI CCNNGG 2 cut(s) 79, 797
BssMI GATC 4 cut(s) 91, 175, 612, 976
Bst2UI CCWGG 2 cut(s) 728, 798
Bst4CI ACNGT 2 cut(s) 24, 928
Bst6I CTCTTC 1 cut(s) 402
BstAUI TGTACA 2 cut(s) 1128, 1192
BstC8I GCNNGC 1 cut(s) 853
BstDEI CTNAG 3 cut(s) 142, 758, 945
BstFNI CGCG 1 cut(s) 330
BstH2I RGCGCY 1 cut(s) 245
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 4 cut(s) 94, 178, 615, 979
BstMAI GTCTC 1 cut(s) 495
BstMBI GATC 4 cut(s) 91, 175, 612, 976
BstMWI GCNNNNNNNGC 2 cut(s) 630, 911
BstNI CCWGG 2 cut(s) 728, 798
BstNSI RCATGY 2 cut(s) 271, 435
BstSCI CCNGG 2 cut(s) 726, 796
BstSFI CTRYAG 1 cut(s) 102
BstUI CGCG 1 cut(s) 330
BstV1I GCAGC 3 cut(s) 240, 441, 611
BstX2I RGATCY 3 cut(s) 91, 612, 976
BstYI RGATCY 3 cut(s) 91, 612, 976
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 853
CfoI GCGC 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 724
CsiI ACCWGGT 1 cut(s) 726
Csp6I GTAC 4 cut(s) 802, 1035, 1129, 1193
CviAII CATG 4 cut(s) 268, 432, 846, 1000
CviQI GTAC 4 cut(s) 802, 1035, 1129, 1193
DdeI CTNAG 3 cut(s) 142, 758, 945
DpnI GATC 4 cut(s) 93, 177, 614, 978
DpnII GATC 4 cut(s) 91, 175, 612, 976
DraI TTTAAA 1 cut(s) 897
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Eco47I GGWCC 1 cut(s) 724
Eco47III AGCGCT 1 cut(s) 243
EcoRII CCWGG 2 cut(s) 726, 796
EcoT22I ATGCAT 1 cut(s) 635
FaeI CATG 4 cut(s) 271, 435, 849, 1003
FalI AAGNNNNNCTT 4 cut(s) 679, 711, 767, 799
FatI CATG 4 cut(s) 267, 431, 845, 999
FauI CCCGC 1 cut(s) 844
FblI GTMKAC 1 cut(s) 732
Fnu4HI GCNGC 4 cut(s) 229, 331, 455, 625
Fsp4HI GCNGC 4 cut(s) 229, 331, 455, 625
FspBI CTAG 4 cut(s) 494, 621, 957, 1226
GlaI GCGC 1 cut(s) 243
GluI GCNGC 4 cut(s) 229, 331, 455, 625
HaeII RGCGCY 1 cut(s) 245
HapII CCGG 2 cut(s) 47, 747
HhaI GCGC 1 cut(s) 244
Hin1II CATG 4 cut(s) 271, 435, 849, 1003
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HincII GTYRAC 2 cut(s) 573, 733
HindII GTYRAC 2 cut(s) 573, 733
HindIII AAGCTT 1 cut(s) 755
HinfI GANTC 6 cut(s) 196, 347, 379, 441, 520, 701
HpaII CCGG 2 cut(s) 47, 747
HphI GGTGA 1 cut(s) 786
Hpy166II GTNNAC 4 cut(s) 573, 733, 1009, 1129
Hpy188I TCNGA 4 cut(s) 28, 89, 753, 946
Hpy188III TCNNGA 6 cut(s) 47, 200, 524, 833, 862, 917
Hpy8I GTNNAC 4 cut(s) 573, 733, 1009, 1129
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 2 cut(s) 85, 997
HpyCH4III ACNGT 2 cut(s) 24, 928
HpyCH4IV ACGT 3 cut(s) 54, 446, 1149
HpyCH4V TGCA 9 cut(s) 12, 167, 206, 295, 552, 568, 606, 627, 633
HpyF10VI GCNNNNNNNGC 2 cut(s) 630, 911
HpyF3I CTNAG 3 cut(s) 142, 758, 945
HpySE526I ACGT 3 cut(s) 54, 446, 1149
Hsp92II CATG 4 cut(s) 271, 435, 849, 1003
HspAI GCGC 1 cut(s) 242
Kpn2I TCCGGA 1 cut(s) 46
Kzo9I GATC 4 cut(s) 91, 175, 612, 976
LguI GCTCTTC 1 cut(s) 402
LmnI GCTCC 3 cut(s) 239, 355, 829
Lsp1109I GCAGC 3 cut(s) 240, 441, 611
LweI GCATC 3 cut(s) 154, 193, 282
MabI ACCWGGT 1 cut(s) 726
MaeI CTAG 4 cut(s) 494, 621, 957, 1226
MaeII ACGT 3 cut(s) 54, 446, 1149
MaeIII GTNAC 3 cut(s) 18, 474, 560
MalI GATC 4 cut(s) 93, 177, 614, 978
MboI GATC 4 cut(s) 91, 175, 612, 976
MboII GAAGA 4 cut(s) 35, 419, 783, 848
MflI RGATCY 3 cut(s) 91, 612, 976
MluCI AATT 9 cut(s) 131, 310, 421, 641, 884, 892, 937, 1038, 1095
MlyI GAGTC 3 cut(s) 341, 514, 710
MmeI TCCRAC 1 cut(s) 1132
MnlI CCTC 5 cut(s) 89, 149, 628, 940, 1202
Mph1103I ATGCAT 1 cut(s) 635
MroI TCCGGA 1 cut(s) 46
MslI CAYNNNNRTG 2 cut(s) 449, 1124
MspI CCGG 2 cut(s) 47, 747
MspR9I CCNGG 2 cut(s) 728, 798
MvaI CCWGG 2 cut(s) 728, 798
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 2 cut(s) 630, 911
NdeII GATC 4 cut(s) 91, 175, 612, 976
NlaIII CATG 4 cut(s) 271, 435, 849, 1003
NmuCI GTSAC 1 cut(s) 474
NsiI ATGCAT 1 cut(s) 635
NspI RCATGY 2 cut(s) 271, 435
OliI CACNNNNGTG 1 cut(s) 449
PciI ACATGT 1 cut(s) 267
PciSI GCTCTTC 1 cut(s) 402
PfeI GAWTC 3 cut(s) 196, 379, 441
PflFI GACNNNGTC 1 cut(s) 728
PflMI CCANNNNNTGG 1 cut(s) 877
PkrI GCNGC 4 cut(s) 230, 332, 456, 626
PleI GAGTC 3 cut(s) 341, 514, 709
PpsI GAGTC 3 cut(s) 341, 514, 709
PscI ACATGT 1 cut(s) 267
PshBI ATTAAT 2 cut(s) 309, 1077
Psp1406I AACGTT 1 cut(s) 1149
Psp6I CCWGG 2 cut(s) 726, 796
PspGI CCWGG 2 cut(s) 726, 796
PspPI GGNCC 1 cut(s) 724
PsuI RGATCY 3 cut(s) 91, 612, 976
PsyI GACNNNGTC 1 cut(s) 728
RsaI GTAC 4 cut(s) 803, 1036, 1130, 1194
RsaNI GTAC 4 cut(s) 802, 1035, 1129, 1193
RseI CAYNNNNRTG 2 cut(s) 449, 1124
SalI GTCGAC 1 cut(s) 731
SapI GCTCTTC 1 cut(s) 402
SatI GCNGC 4 cut(s) 229, 331, 455, 625
Sau3AI GATC 4 cut(s) 91, 175, 612, 976
Sau96I GGNCC 1 cut(s) 724
SchI GAGTC 3 cut(s) 341, 514, 710
ScrFI CCNGG 2 cut(s) 728, 798
SexAI ACCWGGT 1 cut(s) 726
SfaNI GCATC 3 cut(s) 154, 193, 282
SfcI CTRYAG 1 cut(s) 102
SinI GGWCC 1 cut(s) 724
SmiMI CAYNNNNRTG 2 cut(s) 449, 1124
SmlI CTYRAG 1 cut(s) 917
SmoI CTYRAG 1 cut(s) 917
Sse9I AATT 9 cut(s) 131, 310, 421, 641, 884, 892, 937, 1038, 1095
SsiI CCGC 2 cut(s) 330, 851
SspI AATATT 2 cut(s) 160, 676
SspMI CTAG 4 cut(s) 494, 621, 957, 1226
StyD4I CCNGG 2 cut(s) 726, 796
TaaI ACNGT 2 cut(s) 24, 928
TaiI ACGT 3 cut(s) 57, 449, 1152
TaqI TCGA 2 cut(s) 364, 732
TasI AATT 9 cut(s) 131, 310, 421, 641, 884, 892, 937, 1038, 1095
TatI WGTACW 3 cut(s) 1034, 1128, 1192
TauI GCSGC 1 cut(s) 333
TfiI GAWTC 3 cut(s) 196, 379, 441
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 1 cut(s) 474
TseI GCWGC 3 cut(s) 228, 454, 624
Tsp45I GTSAC 1 cut(s) 474
TspDTI ATGAA 4 cut(s) 371, 609, 898, 1016
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 1 cut(s) 159
Tth111I GACNNNGTC 1 cut(s) 728
Van91I CCANNNNNTGG 1 cut(s) 877
VpaK11BI GGWCC 1 cut(s) 724
VspI ATTAAT 2 cut(s) 309, 1077
XapI RAATTY 3 cut(s) 131, 892, 1095
XceI RCATGY 2 cut(s) 271, 435
XmiI GTMKAC 1 cut(s) 732
XspI CTAG 4 cut(s) 494, 621, 957, 1226
Zsp2I ATGCAT 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.