Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004213

Physical Location & Seq

Genomic Coordinates Forward (+)

23427855 .. 23428787

Gene Structure 933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1145600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGATGGGGCGCAAGCTTAAGCTCCGGACATCTCCATGTTGTGAAGATGAAGGAACTTGTTCTGAAAGTGGAGTAGACAGATTTAGTGTTCTTCCGGAGGAAGTTGCTCATCATATTCTTTCCTTCCTCAATTTCAAAGACCTCACTCGAGTAGGTGTTCTGTCCAAAAGATGGAGACAATTTCATCTCTCAGTTCTGGTAGTGGATTTTGGTACAAATCGGTGGACAGATATAAAACAAGTGGATTTGGCGAGGATGATGACTTCTTTTGATAGATACTTGCTTGATCGTGGTAATAACAGGATGCAGCGAGTCCGCATCGGCTTGAGTTCCTATGTAAATGAAACAGCGGAGAAAGTCTCTGATGACCATTCTCAAGCAATCAAGTGGATTCGTAATGCAGTAAGGTGTAATGTTGAAGAGCTTGATCTCTATTTCTCACACATTGTTAGTACGAGTACGTTGTCGATGCCATCTTTCATCTTCCATTCTCAATCTTTGTGCTCTCTTTCGGTGTCCTTGAATACATTCATTTCGGAGGTTGTTGAAGTGCCATGTTTATCCTTTTCTAGTAATCTCTGTTACTTATCATTGAGTTCTGTCAAAATAGTACACGAGAGGATTTTCAAATGGATCTCATGTTGCTGCAAATGCCTTCCGGAATTACGTCTTATTTCTATAGACAACTATAACGTCTTATTTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

236

Amino Acids

27.04

Weight (kDa)

8.0

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	29 - 61	1.6e-08	F-box-like
F-box	PF00646	29 - 60	9.6e-08	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004213)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16170 FvH4_6g18953 FvH4_7g04740 FvH4_7g04740
malus_domestica	MD02G1269000.v1.1 MD04G1145300.v1.1 MD04G1145500.v1.1 MD04G1145600.v1.1 MD04G1145900.v1.1 MD12G1159100.v1.1
prunus_persica	Prupe.2G052100_v2.0.a1 Prupe.7G105700_v2.0.a1 Prupe.7G106400_v2.0.a1
pyrus_communis	pycom04g13150
rosa_chinensis	RchiOBHm_Chr1g0330111
rosa_laevigata	RLG00000029830
rosa_multiflora	Rmu_sc0004673.1_g000009
rosa_roxburghii	Rroxscaffold_4G00320200 Rroxscaffold_4G00320300 Rroxscaffold_4G00320320 Rroxscaffold_4G00320330
rosa_rugosa	Rorug01G0086000 Rorug01G0086100 Rorug01G0086200 Rorug02G0131100 Rorug03G0137300
rosa_samantha	Rh1AG104600 Rh1AG104700 Rh1BG082800 Rh1CG100200 Rh1DG107500 Rh1DG108500
rosa_wichuraiana	Rw0G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	171
AccI	GTMKAC	1 cut(s)	75
AccIII	TCCGGA	3 cut(s)	24, 94, 658
AciI	CCGC	2 cut(s)	316, 350
AclWI	GGATC	1 cut(s)	641
AfaI	GTAC	4 cut(s)	214, 454, 460, 612
AfiI	CCNNNNNNNGG	1 cut(s)	171
AflII	CTTAAG	1 cut(s)	17
AgsI	TTSAA	5 cut(s)	136, 419, 523, 548, 628
AluBI	AGCT	3 cut(s)	16, 22, 424
AluI	AGCT	3 cut(s)	16, 22, 424
Alw21I	GWGCWC	1 cut(s)	506
Alw26I	GTCTC	2 cut(s)	169, 364
AlwI	GGATC	1 cut(s)	641
Ama87I	CYCGRG	1 cut(s)	147
Aor13HI	TCCGGA	3 cut(s)	24, 94, 658
ApeKI	GCWGC	2 cut(s)	307, 645
Asp700I	GAANNNNTTC	2 cut(s)	58, 527
AspLEI	GCGC	1 cut(s)	12
AvaI	CYCGRG	1 cut(s)	147
BauI	CACGAG	1 cut(s)	614
Bbv12I	GWGCWC	1 cut(s)	506
BbvI	GCAGC	2 cut(s)	319, 632
BccI	CCATC	2 cut(s)	165, 481
BcoDI	GTCTC	2 cut(s)	169, 364
BfaI	CTAG	1 cut(s)	570
BfmI	CTRYAG	2 cut(s)	678, 704
BfrI	CTTAAG	1 cut(s)	17
BisI	GCNGC	2 cut(s)	308, 646
BlsI	GCNGC	2 cut(s)	309, 647
BmeT110I	CYCGRG	1 cut(s)	147
BmsI	GCATC	3 cut(s)	294, 327, 459
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
BpuEI	CTTGAG	2 cut(s)	346, 360
BsaWI	WCCGGW	3 cut(s)	24, 94, 658
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
BseAI	TCCGGA	3 cut(s)	24, 94, 658
BseGI	GGATG	2 cut(s)	261, 309
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	319, 632
BsiHKAI	GWGCWC	1 cut(s)	506
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	3 cut(s)	25, 95, 659
BslI	CCNNNNNNNGG	1 cut(s)	171
BsmAI	GTCTC	2 cut(s)	169, 364
BsoBI	CYCGRG	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	506
Bsp13I	TCCGGA	3 cut(s)	24, 94, 658
Bsp143I	GATC	3 cut(s)	286, 427, 633
BspACI	CCGC	2 cut(s)	316, 350
BspCNI	CTCAG	1 cut(s)	203
BspEI	TCCGGA	3 cut(s)	24, 94, 658
BspPI	GGATC	1 cut(s)	641
BspQI	GCTCTTC	1 cut(s)	414
BspTI	CTTAAG	1 cut(s)	17
BssMI	GATC	3 cut(s)	286, 427, 633
BssSI	CACGAG	1 cut(s)	614
Bst2BI	CACGAG	1 cut(s)	614
Bst6I	CTCTTC	1 cut(s)	414
BstAFI	CTTAAG	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	190
BstF5I	GGATG	2 cut(s)	261, 309
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	3 cut(s)	289, 430, 636
BstMAI	GTCTC	2 cut(s)	169, 364
BstMBI	GATC	3 cut(s)	286, 427, 633
BstMWI	GCNNNNNNNGC	1 cut(s)	651
BstSFI	CTRYAG	2 cut(s)	678, 704
BstV1I	GCAGC	2 cut(s)	319, 632
BstX2I	RGATCY	1 cut(s)	633
BstYI	RGATCY	1 cut(s)	633
BtsCI	GGATG	2 cut(s)	261, 309
Cac8I	GCNNGC	1 cut(s)	14
CfoI	GCGC	1 cut(s)	12
Csp6I	GTAC	4 cut(s)	213, 453, 459, 611
CviAII	CATG	3 cut(s)	36, 555, 639
CviJI	RGCY	4 cut(s)	16, 22, 324, 424
CviKI_1	RGCY	4 cut(s)	16, 22, 324, 424
CviQI	GTAC	4 cut(s)	213, 453, 459, 611
DdeI	CTNAG	1 cut(s)	190
DpnI	GATC	3 cut(s)	288, 429, 635
DpnII	GATC	3 cut(s)	286, 427, 633
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	147
FaeI	CATG	3 cut(s)	39, 558, 642
FaiI	YATR	9 cut(s)	37, 114, 233, 336, 556, 640, 680, 690, 706
FatI	CATG	3 cut(s)	35, 554, 638
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	2 cut(s)	308, 646
FokI	GGATG	2 cut(s)	268, 316
Fsp4HI	GCNGC	2 cut(s)	308, 646
FspBI	CTAG	1 cut(s)	570
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	2 cut(s)	308, 646
HapII	CCGG	3 cut(s)	25, 95, 659
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	3 cut(s)	39, 558, 642
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	2 cut(s)	312, 391
HpaII	CCGG	3 cut(s)	25, 95, 659
Hpy166II	GTNNAC	3 cut(s)	76, 225, 613
Hpy188I	TCNGA	3 cut(s)	64, 364, 538
Hpy188III	TCNNGA	3 cut(s)	25, 95, 659
Hpy8I	GTNNAC	3 cut(s)	76, 225, 613
HpyAV	CCTTC	3 cut(s)	44, 133, 665
HpyCH4IV	ACGT	3 cut(s)	461, 667, 693
HpyCH4V	TGCA	3 cut(s)	307, 401, 648
HpyF10VI	GCNNNNNNNGC	1 cut(s)	651
HpyF3I	CTNAG	1 cut(s)	190
HpySE526I	ACGT	3 cut(s)	461, 667, 693
Hsp92II	CATG	3 cut(s)	39, 558, 642
HspAI	GCGC	1 cut(s)	10
Kpn2I	TCCGGA	3 cut(s)	24, 94, 658
Kzo9I	GATC	3 cut(s)	286, 427, 633
LguI	GCTCTTC	1 cut(s)	414
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	5 cut(s)	38, 108, 182, 286, 672
Lsp1109I	GCAGC	2 cut(s)	319, 632
LweI	GCATC	3 cut(s)	294, 327, 459
MaeI	CTAG	1 cut(s)	570
MaeII	ACGT	3 cut(s)	461, 667, 693
MaeIII	GTNAC	1 cut(s)	581
MalI	GATC	3 cut(s)	288, 429, 635
MboI	GATC	3 cut(s)	286, 427, 633
MboII	GAAGA	4 cut(s)	56, 83, 431, 475
MflI	RGATCY	1 cut(s)	633
MhlI	GDGCHC	1 cut(s)	506
MluCI	AATT	3 cut(s)	130, 179, 662
MlyI	GAGTC	1 cut(s)	321
MnlI	CCTC	6 cut(s)	91, 137, 152, 246, 532, 612
MroI	TCCGGA	3 cut(s)	24, 94, 658
MroXI	GAANNNNTTC	2 cut(s)	58, 527
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	34
MspA1I	CMGCKG	1 cut(s)	350
MspCI	CTTAAG	1 cut(s)	17
MspI	CCGG	3 cut(s)	25, 95, 659
MwoI	GCNNNNNNNGC	1 cut(s)	651
NdeII	GATC	3 cut(s)	286, 427, 633
NlaIII	CATG	3 cut(s)	39, 558, 642
PaeR7I	CTCGAG	1 cut(s)	147
PciSI	GCTCTTC	1 cut(s)	414
PdmI	GAANNNNTTC	2 cut(s)	58, 527
PfeI	GAWTC	1 cut(s)	391
PflMI	CCANNNNNTGG	1 cut(s)	171
PkrI	GCNGC	2 cut(s)	309, 647
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
PspXI	VCTCGAGB	1 cut(s)	147
PsuI	RGATCY	1 cut(s)	633
RsaI	GTAC	4 cut(s)	214, 454, 460, 612
RsaNI	GTAC	4 cut(s)	213, 453, 459, 611
RseI	CAYNNNNRTG	1 cut(s)	34
SapI	GCTCTTC	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	2 cut(s)	308, 646
Sau3AI	GATC	3 cut(s)	286, 427, 633
SchI	GAGTC	1 cut(s)	321
SduI	GDGCHC	1 cut(s)	506
SfaNI	GCATC	3 cut(s)	294, 327, 459
SfcI	CTRYAG	2 cut(s)	678, 704
Sfr274I	CTCGAG	1 cut(s)	147
SlaI	CTCGAG	1 cut(s)	147
SmiMI	CAYNNNNRTG	1 cut(s)	34
SmlI	CTYRAG	4 cut(s)	17, 147, 325, 375
SmoI	CTYRAG	4 cut(s)	17, 147, 325, 375
Sse9I	AATT	3 cut(s)	130, 179, 662
SsiI	CCGC	2 cut(s)	316, 350
SspMI	CTAG	1 cut(s)	570
TaiI	ACGT	3 cut(s)	464, 670, 696
TaqI	TCGA	2 cut(s)	148, 467
TasI	AATT	3 cut(s)	130, 179, 662
TatI	WGTACW	1 cut(s)	610
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TseI	GCWGC	2 cut(s)	307, 645
TspDTI	ATGAA	5 cut(s)	63, 173, 357, 469, 520
Van91I	CCANNNNNTGG	1 cut(s)	171
Vha464I	CTTAAG	1 cut(s)	17
XhoI	CTCGAG	1 cut(s)	147
XmiI	GTMKAC	1 cut(s)	75
XmnI	GAANNNNTTC	2 cut(s)	58, 527
XspI	CTAG	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.