Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004213

Physical Location & Seq

Genomic Coordinates Forward (+)

13455646 .. 13456776

Gene Structure 1131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G105700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCGCGGAAGCGTAAGTTAGTGGCATCTGCAAGTTGTGTTGCTCAAGGTGCTTGTGCTGAAAATGCAATAGACAGATTTAGCAATCTTCCAGACGAAGTTGCTTATCGCATTCTCTCTTTCCTCACTTTCAAAGAACTCACTCGAGTGGAAGCCGCGTCGAAAAGGTGCAGGCAATTTCATCTATCAGCTCCGCTTGTGAGTTTTGATTCAAGTTGCAAACCACATAGAGTAACCAACCAGAAGCGAGTGAGGTTGATGAGCTCTTTGGATAGGTACTTGTTCTATCGTGGGGATAATAGGATGCAGGTCTTCCGCATTAGATGGAGTTTCTTTACATCCGAACCAGCAAGCAAGCTTTCTGATGATCATTTTCGAGTGTTCACGTGGATTCATAATGCAGTAAGGTGGAATGTTGAAGAGCTTTATCTTTATTTCTCGCATGGTGAGACCAATACAATTGCGTTGCCATCTTGCATATTTCTTTCTCAGTCTTTGCGCTCTCTTTCAGTGAAATTATATGCGATGATTCTTGAAGCCCCATCCTTATCCTTTTCCAGTAATCTCCATTACTTGCAACTGGAACATGTTAAAGTAGTGGATGAGAGGTTTTTCAGATGGATTGCCCGATCCTGCAAATTCATCAAGGAGTTAAAGCTTCTTAATATTCGAGGAATACAGAAAATCACTATTGAAAGTTCGTCTTTAGAATATTTTCTTTGTCGGATTGATAAATTTGATGACTGTTTTCATCTCAACATCTCTGGTAAGAAACTTGTTAGTATGAAAATTGTATTGTCATTTCCTAGACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBD

Protein Analysis

272

Amino Acids

31.66

Weight (kDa)

9.69

Isoelectric Point (pI)

48.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004213)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16170 FvH4_6g18953 FvH4_7g04740 FvH4_7g04740
malus_domestica	MD02G1269000.v1.1 MD04G1145300.v1.1 MD04G1145500.v1.1 MD04G1145600.v1.1 MD04G1145900.v1.1 MD12G1159100.v1.1
prunus_persica	Prupe.2G052100_v2.0.a1 Prupe.7G105700_v2.0.a1 Prupe.7G106400_v2.0.a1
pyrus_communis	pycom04g13150
rosa_chinensis	RchiOBHm_Chr1g0330111
rosa_laevigata	RLG00000029830
rosa_multiflora	Rmu_sc0004673.1_g000009
rosa_roxburghii	Rroxscaffold_4G00320200 Rroxscaffold_4G00320300 Rroxscaffold_4G00320320 Rroxscaffold_4G00320330
rosa_rugosa	Rorug01G0086000 Rorug01G0086100 Rorug01G0086200 Rorug02G0131100 Rorug03G0137300
rosa_samantha	Rh1AG104600 Rh1AG104700 Rh1BG082800 Rh1CG100200 Rh1DG107500 Rh1DG108500
rosa_wichuraiana	Rw0G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	298
AccII	CGCG	2 cut(s)	7, 158
AciI	CCGC	4 cut(s)	7, 156, 194, 316
AclWI	GGATC	1 cut(s)	624
AcsI	RAATTY	2 cut(s)	638, 734
AcvI	CACGTG	1 cut(s)	387
AfaI	GTAC	1 cut(s)	278
AflIII	ACRYGT	1 cut(s)	586
AgsI	TTSAA	5 cut(s)	133, 213, 419, 536, 695
AleI	CACNNNNGTG	1 cut(s)	146
AluBI	AGCT	5 cut(s)	191, 264, 358, 424, 658
AluI	AGCT	5 cut(s)	191, 264, 358, 424, 658
Alw21I	GWGCWC	1 cut(s)	266
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	1 cut(s)	624
Ama87I	CYCGRG	1 cut(s)	144
ApoI	RAATTY	2 cut(s)	638, 734
Asp700I	GAANNNNTTC	1 cut(s)	714
AspLEI	GCGC	2 cut(s)	7, 501
AsuHPI	GGTGA	1 cut(s)	458
AvaI	CYCGRG	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	266
BbrPI	CACGTG	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	304
Bbv12I	GWGCWC	1 cut(s)	266
BccI	CCATC	4 cut(s)	318, 478, 550, 612
BclI	TGATCA	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	443
BfaI	CTAG	2 cut(s)	807, 814
BfuAI	ACCTGC	1 cut(s)	298
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	144
BmsI	GCATC	2 cut(s)	35, 294
BpiI	GAAGAC	1 cut(s)	304
BpuEI	CTTGAG	1 cut(s)	30
BsaAI	YACGTR	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	443
Bse1I	ACTGG	2 cut(s)	558, 585
BseGI	GGATG	4 cut(s)	309, 338, 542, 607
BseMII	CTCAG	1 cut(s)	503
BseNI	ACTGG	2 cut(s)	558, 585
BsgI	GTGCAG	1 cut(s)	190
Bsh1236I	CGCG	2 cut(s)	7, 158
BsiHKAI	GWGCWC	1 cut(s)	266
BsiHKCI	CYCGRG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	443
BsmI	GAATGC	1 cut(s)	111
Bso31I	GGTCTC	1 cut(s)	443
BsoBI	CYCGRG	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	2 cut(s)	367, 629
BspACI	CCGC	4 cut(s)	7, 156, 194, 316
BspCNI	CTCAG	1 cut(s)	502
BspFNI	CGCG	2 cut(s)	7, 158
BspMI	ACCTGC	1 cut(s)	298
BspPI	GGATC	1 cut(s)	624
BspQI	GCTCTTC	1 cut(s)	414
BspTNI	GGTCTC	1 cut(s)	443
BsrI	ACTGG	2 cut(s)	558, 585
BssMI	GATC	2 cut(s)	367, 629
Bst4CI	ACNGT	1 cut(s)	746
Bst6I	CTCTTC	1 cut(s)	414
BstBAI	YACGTR	1 cut(s)	387
BstC8I	GCNNGC	3 cut(s)	173, 352, 356
BstDEI	CTNAG	1 cut(s)	489
BstF5I	GGATG	4 cut(s)	309, 338, 542, 607
BstFNI	CGCG	2 cut(s)	7, 158
BstHHI	GCGC	2 cut(s)	7, 501
BstKTI	GATC	2 cut(s)	370, 632
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	2 cut(s)	367, 629
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 65
BstNSI	RCATGY	1 cut(s)	590
BstUI	CGCG	2 cut(s)	7, 158
BstV2I	GAAGAC	1 cut(s)	304
BtgZI	GCGATG	1 cut(s)	539
BtsCI	GGATG	4 cut(s)	309, 338, 542, 607
BtsIMutI	CAGTG	1 cut(s)	516
BveI	ACCTGC	1 cut(s)	298
Cac8I	GCNNGC	3 cut(s)	173, 352, 356
CfoI	GCGC	2 cut(s)	7, 501
CseI	GACGC	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	2 cut(s)	443, 587
CviJI	RGCY	7 cut(s)	155, 191, 264, 358, 424, 539, 658
CviKI_1	RGCY	7 cut(s)	155, 191, 264, 358, 424, 539, 658
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	489
DpnI	GATC	2 cut(s)	369, 631
DpnII	GATC	2 cut(s)	367, 629
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Ecl136II	GAGCTC	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	443
Eco53kI	GAGCTC	1 cut(s)	264
Eco72I	CACGTG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	266
FaeI	CATG	2 cut(s)	446, 590
FaiI	YATR	8 cut(s)	228, 396, 444, 479, 520, 522, 588, 785
FalI	AAGNNNNNCTT	2 cut(s)	688, 720
FatI	CATG	2 cut(s)	442, 586
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	4 cut(s)	316, 325, 529, 614
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	2 cut(s)	807, 814
GlaI	GCGC	2 cut(s)	6, 500
GluI	GCNGC	1 cut(s)	156
HgaI	GACGC	1 cut(s)	147
HhaI	GCGC	2 cut(s)	7, 501
Hin1II	CATG	2 cut(s)	446, 590
Hin6I	GCGC	2 cut(s)	5, 499
HinP1I	GCGC	2 cut(s)	5, 499
HindIII	AAGCTT	2 cut(s)	356, 656
HinfI	GANTC	4 cut(s)	209, 391, 529, 810
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	4 cut(s)	343, 364, 617, 726
Hpy188III	TCNNGA	2 cut(s)	92, 533
Hpy8I	GTNNAC	1 cut(s)	384
Hpy99I	CGWCG	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	746
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	9 cut(s)	32, 68, 171, 219, 307, 401, 477, 577, 636
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 65
HpyF3I	CTNAG	1 cut(s)	489
HpySE526I	ACGT	1 cut(s)	386
Hsp92II	CATG	2 cut(s)	446, 590
HspAI	GCGC	2 cut(s)	5, 499
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	367, 629
LguI	GCTCTTC	1 cut(s)	414
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	9 cut(s)	105, 157, 254, 293, 360, 566, 571, 646, 750
LweI	GCATC	2 cut(s)	35, 294
MaeI	CTAG	2 cut(s)	807, 814
MaeII	ACGT	1 cut(s)	386
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	2 cut(s)	369, 631
MboI	GATC	2 cut(s)	367, 629
MboII	GAAGA	3 cut(s)	80, 304, 431
MfeI	CAATTG	1 cut(s)	459
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	6 cut(s)	176, 459, 515, 638, 734, 789
MlyI	GAGTC	1 cut(s)	804
MmeI	TCCRAC	1 cut(s)	704
MnlI	CCTC	4 cut(s)	134, 246, 600, 665
MroXI	GAANNNNTTC	1 cut(s)	714
MseI	TTAA	3 cut(s)	591, 653, 663
MslI	CAYNNNNRTG	1 cut(s)	146
MunI	CAATTG	1 cut(s)	459
Mva1269I	GAATGC	1 cut(s)	111
MvnI	CGCG	2 cut(s)	7, 158
MwoI	GCNNNNNNNGC	2 cut(s)	50, 65
NdeII	GATC	2 cut(s)	367, 629
NlaIII	CATG	2 cut(s)	446, 590
NspI	RCATGY	1 cut(s)	590
OliI	CACNNNNGTG	1 cut(s)	146
PaeR7I	CTCGAG	1 cut(s)	144
PciI	ACATGT	1 cut(s)	586
PciSI	GCTCTTC	1 cut(s)	414
PctI	GAATGC	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	714
PfeI	GAWTC	3 cut(s)	209, 391, 529
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	804
PmaCI	CACGTG	1 cut(s)	387
PmlI	CACGTG	1 cut(s)	387
PpsI	GAGTC	1 cut(s)	804
Ppu21I	YACGTR	1 cut(s)	387
PscI	ACATGT	1 cut(s)	586
Psp124BI	GAGCTC	1 cut(s)	266
PspCI	CACGTG	1 cut(s)	387
PspXI	VCTCGAGB	1 cut(s)	144
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	146
SacI	GAGCTC	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	414
SaqAI	TTAA	3 cut(s)	591, 653, 663
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	2 cut(s)	367, 629
SchI	GAGTC	1 cut(s)	804
SduI	GDGCHC	1 cut(s)	266
SfaNI	GCATC	2 cut(s)	35, 294
Sfr274I	CTCGAG	1 cut(s)	144
SlaI	CTCGAG	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	2 cut(s)	45, 144
SmoI	CTYRAG	2 cut(s)	45, 144
Sse9I	AATT	6 cut(s)	176, 459, 515, 638, 734, 789
SsiI	CCGC	4 cut(s)	7, 156, 194, 316
SspI	AATATT	2 cut(s)	667, 713
SspMI	CTAG	2 cut(s)	807, 814
SstI	GAGCTC	1 cut(s)	266
TaaI	ACNGT	1 cut(s)	746
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	4 cut(s)	145, 161, 376, 670
TasI	AATT	6 cut(s)	176, 459, 515, 638, 734, 789
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	3 cut(s)	209, 391, 529
Tru1I	TTAA	3 cut(s)	591, 653, 663
Tru9I	TTAA	3 cut(s)	591, 653, 663
TscAI	CASTG	1 cut(s)	516
TspDTI	ATGAA	5 cut(s)	170, 383, 631, 740, 800
TspRI	CASTG	1 cut(s)	516
XapI	RAATTY	2 cut(s)	638, 734
XceI	RCATGY	1 cut(s)	590
XhoI	CTCGAG	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	714
XspI	CTAG	2 cut(s)	807, 814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.