Rroxscaffold_4G00320300

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004213
Physical Location & Seq
Reverse (-)
48937750 .. 48939465
1716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00320300.1

Sequence Viewer

Length: 477 bp
ATGGCTGCCCATGCAACTAATGGCATGCACGCTATGTTCAAAGATTGTTTCATGCAAGCACCATTAGATGACATTCGTCGCCTGGGTCTTATTCAACTTACGAGCTTCCGTAATGACATAGTTCCAATAACGGCCTCTCTTCTCAGAAGAACTGGTTATCTGAATAGCTTGGTACTGATGAGTTCTAAACCTTCTAGATCGGACTCTAAATCTATATCTTCATCTGGATTTGATATGGGATACTGGAAATTGCAAAACCTCACTTTCATTTACCAGCTGAAGGATGTGAGAATTGACCTCTCCAGCGGGTCTAATGAAATTGAATTTGCAAAGTACATTCTCGAAAATGCTCCGAATTTGAAGAAGATCGTGATCCGTCATCATCCGGGATCCCAACAATCAAATATCGTGGCAGGGAAGGTGACCAGATGCAAGATCATTTCGAGAGCCATTATAGTGATCCAGGAAATTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

158

Amino Acids

17.78

Weight (kDa)

9.89

Isoelectric Point (pI)

49.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 104 - 125 2.5e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 306
AclWI GGATC 4 cut(s) 367, 384, 397, 454
AcsI RAATTY 3 cut(s) 323, 355, 468
AcuI CTGAAG 1 cut(s) 299
AfaI GTAC 2 cut(s) 174, 335
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 4 cut(s) 40, 95, 323, 361
AjnI CCWGG 2 cut(s) 81, 462
AluBI AGCT 3 cut(s) 105, 168, 277
AluI AGCT 3 cut(s) 105, 168, 277
AlwI GGATC 4 cut(s) 367, 384, 397, 454
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 3 cut(s) 323, 355, 468
AsuC2I CCSGG 1 cut(s) 387
AsuHPI GGTGA 1 cut(s) 433
BamHI GGATCC 1 cut(s) 389
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 2 cut(s) 83, 464
BciVI GTATCC 1 cut(s) 233
BcnI CCSGG 1 cut(s) 387
BfaI CTAG 1 cut(s) 195
BfuI GTATCC 1 cut(s) 233
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 3 cut(s) 83, 387, 464
BmiI GGNNCC 1 cut(s) 391
BmrFI CCNGG 3 cut(s) 83, 387, 464
BmsI GCATC 1 cut(s) 419
BoxI GACNNNNGTC 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 286
BpuMI CCSGG 1 cut(s) 387
BsaBI GATNNNNATC 1 cut(s) 371
BsaJI CCNNGG 1 cut(s) 82
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse1I ACTGG 2 cut(s) 157, 248
Bse8I GATNNNNATC 1 cut(s) 371
BseBI CCWGG 2 cut(s) 83, 464
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 2 cut(s) 289, 382
BseJI GATNNNNATC 1 cut(s) 371
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMII CTCAG 1 cut(s) 157
BseNI ACTGG 2 cut(s) 157, 248
BshFI GGCC 1 cut(s) 134
BsiSI CCGG 1 cut(s) 386
BslI CCNNNNNNNGG 1 cut(s) 280
BsnI GGCC 1 cut(s) 134
Bsp143I GATC 6 cut(s) 197, 366, 372, 389, 435, 459
BspACI CCGC 1 cut(s) 306
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 391
BspPI GGATC 4 cut(s) 367, 384, 397, 454
BsrI ACTGG 2 cut(s) 157, 248
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 6 cut(s) 197, 366, 372, 389, 435, 459
Bst2UI CCWGG 2 cut(s) 83, 464
Bst6I CTCTTC 1 cut(s) 144
BstC8I GCNNGC 3 cut(s) 26, 30, 57
BstDEI CTNAG 1 cut(s) 143
BstEII GGTNACC 1 cut(s) 421
BstF5I GGATG 2 cut(s) 289, 382
BstKTI GATC 6 cut(s) 200, 369, 375, 392, 438, 462
BstMBI GATC 6 cut(s) 197, 366, 372, 389, 435, 459
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 2 cut(s) 83, 464
BstNSI RCATGY 1 cut(s) 28
BstPAI GACNNNNGTC 1 cut(s) 75
BstPI GGTNACC 1 cut(s) 421
BstSCI CCNGG 3 cut(s) 81, 385, 462
BstX2I RGATCY 1 cut(s) 389
BstYI RGATCY 1 cut(s) 389
BsuI GTATCC 1 cut(s) 233
BsuRI GGCC 1 cut(s) 134
BtsCI GGATG 2 cut(s) 289, 382
Cac8I GCNNGC 3 cut(s) 26, 30, 57
Csp6I GTAC 2 cut(s) 173, 334
CspCI CAANNNNNGTGG 2 cut(s) 390, 425
CviAII CATG 3 cut(s) 11, 25, 52
CviJI RGCY 6 cut(s) 5, 105, 134, 168, 277, 449
CviKI_1 RGCY 6 cut(s) 5, 105, 134, 168, 277, 449
CviQI GTAC 2 cut(s) 173, 334
DdeI CTNAG 1 cut(s) 143
DpnI GATC 6 cut(s) 199, 368, 374, 391, 437, 461
DpnII GATC 6 cut(s) 197, 366, 372, 389, 435, 459
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco57I CTGAAG 1 cut(s) 299
Eco91I GGTNACC 1 cut(s) 421
EcoO65I GGTNACC 1 cut(s) 421
EcoRII CCWGG 2 cut(s) 81, 462
FaeI CATG 3 cut(s) 14, 28, 55
FaiI YATR 8 cut(s) 12, 26, 35, 53, 119, 215, 236, 455
FatI CATG 3 cut(s) 10, 24, 51
FauI CCCGC 1 cut(s) 299
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 296, 369
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 195
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 286
HaeIII GGCC 1 cut(s) 134
HapII CCGG 1 cut(s) 386
Hin1II CATG 3 cut(s) 14, 28, 55
HinfI GANTC 1 cut(s) 203
HpaII CCGG 1 cut(s) 386
HphI GGTGA 1 cut(s) 433
Hpy188I TCNGA 4 cut(s) 146, 162, 202, 354
Hpy188III TCNNGA 5 cut(s) 195, 225, 341, 370, 444
Hpy99I CGWCG 1 cut(s) 81
HpyAV CCTTC 3 cut(s) 201, 274, 412
HpyCH4V TGCA 6 cut(s) 14, 28, 55, 253, 329, 432
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 143
Hsp92II CATG 3 cut(s) 14, 28, 55
Kzo9I GATC 6 cut(s) 197, 366, 372, 389, 435, 459
LmnI GCTCC 1 cut(s) 355
LweI GCATC 1 cut(s) 419
MaeI CTAG 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 421
MalI GATC 6 cut(s) 199, 368, 374, 391, 437, 461
MboI GATC 6 cut(s) 197, 366, 372, 389, 435, 459
MboII GAAGA 5 cut(s) 131, 159, 210, 373, 376
MflI RGATCY 1 cut(s) 389
MluCI AATT 6 cut(s) 248, 291, 318, 323, 355, 468
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 3 cut(s) 145, 269, 308
MslI CAYNNNNRTG 1 cut(s) 455
MspA1I CMGCKG 2 cut(s) 277, 306
MspI CCGG 1 cut(s) 386
MspR9I CCNGG 3 cut(s) 83, 387, 464
MvaI CCWGG 2 cut(s) 83, 464
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 387
NdeII GATC 6 cut(s) 197, 366, 372, 389, 435, 459
NlaIII CATG 3 cut(s) 14, 28, 55
NlaIV GGNNCC 1 cut(s) 391
NmuCI GTSAC 1 cut(s) 421
NspI RCATGY 1 cut(s) 28
PaeI GCATGC 1 cut(s) 28
PfoI TCCNGGA 2 cut(s) 385, 462
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PshAI GACNNNNGTC 1 cut(s) 75
Psp6I CCWGG 2 cut(s) 81, 462
PspEI GGTNACC 1 cut(s) 421
PspGI CCWGG 2 cut(s) 81, 462
PspN4I GGNNCC 1 cut(s) 391
PsuI RGATCY 1 cut(s) 389
PvuII CAGCTG 1 cut(s) 277
RsaI GTAC 2 cut(s) 174, 335
RsaNI GTAC 2 cut(s) 173, 334
RseI CAYNNNNRTG 1 cut(s) 455
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 6 cut(s) 197, 366, 372, 389, 435, 459
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 3 cut(s) 83, 387, 464
SetI ASST 7 cut(s) 107, 170, 193, 261, 279, 300, 423
SfaNI GCATC 1 cut(s) 419
SmiMI CAYNNNNRTG 1 cut(s) 455
SphI GCATGC 1 cut(s) 28
Sse9I AATT 6 cut(s) 248, 291, 318, 323, 355, 468
SsiI CCGC 1 cut(s) 306
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 3 cut(s) 81, 385, 462
TaqI TCGA 2 cut(s) 342, 443
TasI AATT 6 cut(s) 248, 291, 318, 323, 355, 468
TatI WGTACW 1 cut(s) 333
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 4 cut(s) 40, 210, 256, 330
TspGWI ACGGA 2 cut(s) 98, 365
XapI RAATTY 3 cut(s) 323, 355, 468
XbaI TCTAGA 1 cut(s) 194
XceI RCATGY 1 cut(s) 28
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.