Rw0G015890

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00746
OG0004213
Physical Location & Seq
Reverse (-)
3334 .. 5284
1951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G015890.1

Sequence Viewer

Length: 1452 bp
ATGATGCTGTGCAAGAAGTTGTGGTCAGACAGATTTAGTAATCTTCCGGACGAACTTGCTCATCATATTCTTTCCTTCCTCGGTGTCAGAGATCTCGCTTCTGTAGGGGCTGTGTCCAAAAGGTGTAGAGAATTTTACCTCTCAGTTCCATCAGTGAATATTGATGCAAGTTGTTATCTCCCAGTTCCATTAGTGAATCTTGATGCAAGTTGTTATCTAAAAACCAGCAGCAAGTTAGGAGCGCTGATGTGTTTCTGGGATAGATACATGTTTCAGCGTGGTGTTAATAAGATGCAACGCTTTTACATTAATTGGACTTTCTTTACACGCGGCATTGCGAATAAAGACTCTGTGGAGCAAGATCGAATAAACTCTTGGATTCATAACGCAGTAAGGTGTAATGTTGAAGAGCTTAACCTTATTTTCACATCATGTGGTGGATTATCGTTTGTGCTGCCATCTTGCCTATATCAGTCACAATCTTTCAAGTCTCTAGTATTAAAATGCTTGGATAAGATGACTCTTGAAGCACCACCAGTATCTCTTTCCTGCAATCTCCGTTACTTGCAGTTGACTTCTGTTAGAATAGCAGATGAAAAGTTTTGCAAGTGGATCTCCTCTAGCTGCAAATGCATTAAGAAATTACAGCTTATTCAAGTTAAAGGGATTAAAAATATTACCATTCAAAGCTCGTCTTTGGAGTCATTTACTTTTGTTGGTATGGACCTGGTCGACCTTAATATCTCCTGTCAGAAGCTTAGAAGTATTAAAATAAAGTGGAACTTTTATGCTTCACCTGGGTACCGCTCATCGAATATATCTGCTCCAAATCTGGAAGATTTAACATGGGTGGGCAAGGTCTTGAATAGCCAAAACCTGGGCAAATTACTGAATTTAAAAAGAGCTTTCATTGCTCTTGAGCCTACGGTAGATGACAATTTATCTGAGGTCTTTTCTAGTATATGTAGGACTAAAGATCTTGGTATAAATGAGAACACCATGAAGGCTATGTTCAAAGATTGTTTCATGCAAGCACCATTAGATGACATTCGTCGGCTGGGTCTTGTTCAACTTACGAGCTTCAGTAATGACATAGTTCCAATAACGGCCTCTCTTCTCAGAAGAACTGGTTATCTGAATACCTTGGTACTGATGAGTTCTAAACCTTCTAGATCGGACTCTAAATCTATATCTTCATCTGGATTTGATATGGGATACTGGAAATTGCAAAACCTCACTTTCATTTACCAGCTGAAGGATGTGAGAATAGACCTCTCCAGCGGGTCTAATGAAATTGAGTTTGCAAAGTACATTCTCGAAAATGCTCCGAATTTGAAGAAGATCGTGATCCGTCATCATCCGGGATCCCAACAATCAAATATCGTGGTAGGGAAGGTGACCAGATGCAAGATCATTTCGAGAGCCATTATTGTGATCCAGGAAATTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

483

Amino Acids

54.76

Weight (kDa)

9.33

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 12 - 44 2e-07 F-box-like
F-box PF00646 12 - 44 1.8e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 111 - 478 6.5e-17 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 124 - 280 5.2e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 801
AccB1I GGYRCC 1 cut(s) 801
AccB7I CCANNNNNTGG 1 cut(s) 877
AccBSI CCGCTC 1 cut(s) 807
AccI GTMKAC 1 cut(s) 732
AccII CGCG 1 cut(s) 330
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 3 cut(s) 330, 805, 1281
AclWI GGATC 5 cut(s) 620, 1342, 1359, 1372, 1429
AcsI RAATTY 4 cut(s) 131, 892, 1330, 1443
AcuI CTGAAG 2 cut(s) 1066, 1274
AfaI GTAC 3 cut(s) 803, 1149, 1310
AfeI AGCGCT 1 cut(s) 243
AfiI CCNNNNNNNGG 2 cut(s) 877, 1255
AflIII ACRYGT 1 cut(s) 267
AgsI TTSAA 9 cut(s) 407, 487, 527, 656, 686, 865, 1015, 1070, 1336
AjnI CCWGG 4 cut(s) 726, 796, 876, 1437
AjuI GAANNNNNNNTTGG 2 cut(s) 358, 390
AluBI AGCT 8 cut(s) 412, 624, 649, 690, 757, 905, 1080, 1252
AluI AGCT 8 cut(s) 412, 624, 649, 690, 757, 905, 1080, 1252
Alw26I GTCTC 1 cut(s) 495
AlwI GGATC 5 cut(s) 620, 1342, 1359, 1372, 1429
Aor13HI TCCGGA 1 cut(s) 46
Aor51HI AGCGCT 1 cut(s) 243
AoxI GGCC 1 cut(s) 1107
ApeKI GCWGC 3 cut(s) 228, 454, 624
ApoI RAATTY 4 cut(s) 131, 892, 1330, 1443
AseI ATTAAT 1 cut(s) 309
Asp718I GGTACC 1 cut(s) 801
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 1 cut(s) 724
AsuC2I CCSGG 1 cut(s) 1362
AsuHPI GGTGA 2 cut(s) 786, 1408
AvaII GGWCC 1 cut(s) 724
BaeI ACNNNNGTAYC 2 cut(s) 785, 818
BamHI GGATCC 1 cut(s) 1364
BanI GGYRCC 1 cut(s) 801
BbvI GCAGC 3 cut(s) 240, 441, 611
BccI CCATC 2 cut(s) 157, 466
BceAI ACGGC 1 cut(s) 1122
BciT130I CCWGG 4 cut(s) 728, 798, 878, 1439
BciVI GTATCC 1 cut(s) 1208
BcnI CCSGG 1 cut(s) 1362
BcoDI GTCTC 1 cut(s) 495
BfaI CTAG 4 cut(s) 494, 621, 957, 1170
BfmI CTRYAG 1 cut(s) 102
BfoI RGCGCY 1 cut(s) 245
BfuI GTATCC 1 cut(s) 1208
BglII AGATCT 2 cut(s) 91, 976
BisI GCNGC 4 cut(s) 229, 331, 455, 625
BlsI GCNGC 4 cut(s) 230, 332, 456, 626
Bme1390I CCNGG 5 cut(s) 728, 798, 878, 1362, 1439
Bme18I GGWCC 1 cut(s) 724
BmgT120I GGNCC 1 cut(s) 724
BmiI GGNNCC 2 cut(s) 803, 1366
BmrFI CCNGG 5 cut(s) 728, 798, 878, 1362, 1439
BmrI ACTGGG 1 cut(s) 176
BmsI GCATC 4 cut(s) 154, 193, 282, 1394
BmuI ACTGGG 1 cut(s) 176
BoxI GACNNNNGTC 1 cut(s) 1050
BpmI CTGGAG 1 cut(s) 1261
BpuEI CTTGAG 1 cut(s) 938
BpuMI CCSGG 1 cut(s) 1362
BsaBI GATNNNNATC 1 cut(s) 1346
BsaJI CCNNGG 4 cut(s) 79, 797, 877, 1143
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 2 cut(s) 877, 1255
Bse1I ACTGG 4 cut(s) 182, 536, 1132, 1223
Bse3DI GCAATG 2 cut(s) 333, 909
Bse8I GATNNNNATC 1 cut(s) 1346
BseAI TCCGGA 1 cut(s) 46
BseBI CCWGG 4 cut(s) 728, 798, 878, 1439
BseDI CCNNGG 4 cut(s) 79, 797, 877, 1143
BseGI GGATG 2 cut(s) 1264, 1357
BseJI GATNNNNATC 1 cut(s) 1346
BseLI CCNNNNNNNGG 2 cut(s) 877, 1255
BseMI GCAATG 2 cut(s) 333, 909
BseMII CTCAG 3 cut(s) 156, 936, 1132
BseNI ACTGG 4 cut(s) 182, 536, 1132, 1223
BseRI GAGGAG 1 cut(s) 607
BseXI GCAGC 3 cut(s) 240, 441, 611
BseYI CCCAGC 1 cut(s) 1057
Bsh1236I CGCG 1 cut(s) 330
BshFI GGCC 1 cut(s) 1109
BshNI GGYRCC 1 cut(s) 801
BsiSI CCGG 2 cut(s) 47, 1361
BslI CCNNNNNNNGG 2 cut(s) 877, 1255
BsmAI GTCTC 1 cut(s) 495
BsnI GGCC 1 cut(s) 1109
Bsp13I TCCGGA 1 cut(s) 46
BspACI CCGC 3 cut(s) 330, 805, 1281
BspANI GGCC 1 cut(s) 1109
BspCNI CTCAG 3 cut(s) 155, 937, 1131
BspEI TCCGGA 1 cut(s) 46
BspFNI CGCG 1 cut(s) 330
BspLI GGNNCC 2 cut(s) 803, 1366
BspPI GGATC 5 cut(s) 620, 1342, 1359, 1372, 1429
BspQI GCTCTTC 1 cut(s) 402
BspT107I GGYRCC 1 cut(s) 801
BsrBI CCGCTC 1 cut(s) 807
BsrDI GCAATG 2 cut(s) 333, 909
BsrI ACTGG 4 cut(s) 182, 536, 1132, 1223
BssECI CCNNGG 4 cut(s) 79, 797, 877, 1143
BssT1I CCWWGG 1 cut(s) 1143
Bst2UI CCWGG 4 cut(s) 728, 798, 878, 1439
Bst4CI ACNGT 1 cut(s) 928
Bst6I CTCTTC 2 cut(s) 402, 1119
BstC8I GCNNGC 1 cut(s) 1032
BstDEI CTNAG 4 cut(s) 142, 758, 945, 1118
BstEII GGTNACC 1 cut(s) 1396
BstF5I GGATG 2 cut(s) 1264, 1357
BstFNI CGCG 1 cut(s) 330
BstH2I RGCGCY 1 cut(s) 245
BstHHI GCGC 1 cut(s) 244
BstMAI GTCTC 1 cut(s) 495
BstMWI GCNNNNNNNGC 2 cut(s) 630, 911
BstNI CCWGG 4 cut(s) 728, 798, 878, 1439
BstNSI RCATGY 1 cut(s) 271
BstPAI GACNNNNGTC 1 cut(s) 1050
BstPI GGTNACC 1 cut(s) 1396
BstSCI CCNGG 5 cut(s) 726, 796, 876, 1360, 1437
BstSFI CTRYAG 1 cut(s) 102
BstUI CGCG 1 cut(s) 330
BstV1I GCAGC 3 cut(s) 240, 441, 611
BstX2I RGATCY 4 cut(s) 91, 612, 976, 1364
BstYI RGATCY 4 cut(s) 91, 612, 976, 1364
BsuI GTATCC 1 cut(s) 1208
BsuRI GGCC 1 cut(s) 1109
BtsCI GGATG 2 cut(s) 1264, 1357
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 1032
CfoI GCGC 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 724
CsiI ACCWGGT 1 cut(s) 726
Csp6I GTAC 3 cut(s) 802, 1148, 1309
CspCI CAANNNNNGTGG 2 cut(s) 1365, 1400
CviAII CATG 5 cut(s) 268, 432, 846, 1000, 1027
CviQI GTAC 3 cut(s) 802, 1148, 1309
DdeI CTNAG 4 cut(s) 142, 758, 945, 1118
DraI TTTAAA 1 cut(s) 897
Eam1104I CTCTTC 2 cut(s) 402, 1119
EarI CTCTTC 2 cut(s) 402, 1119
Eco130I CCWWGG 1 cut(s) 1143
Eco47I GGWCC 1 cut(s) 724
Eco47III AGCGCT 1 cut(s) 243
Eco57I CTGAAG 2 cut(s) 1066, 1274
Eco91I GGTNACC 1 cut(s) 1396
EcoO65I GGTNACC 1 cut(s) 1396
EcoRII CCWGG 4 cut(s) 726, 796, 876, 1437
EcoT14I CCWWGG 1 cut(s) 1143
EcoT22I ATGCAT 1 cut(s) 635
ErhI CCWWGG 1 cut(s) 1143
FaeI CATG 5 cut(s) 271, 435, 849, 1003, 1030
FalI AAGNNNNNCTT 4 cut(s) 679, 711, 767, 799
FatI CATG 5 cut(s) 267, 431, 845, 999, 1026
FauI CCCGC 1 cut(s) 1274
FblI GTMKAC 1 cut(s) 732
Fnu4HI GCNGC 4 cut(s) 229, 331, 455, 625
FokI GGATG 2 cut(s) 1271, 1344
Fsp4HI GCNGC 4 cut(s) 229, 331, 455, 625
FspBI CTAG 4 cut(s) 494, 621, 957, 1170
GlaI GCGC 1 cut(s) 243
GluI GCNGC 4 cut(s) 229, 331, 455, 625
GsaI CCCAGC 1 cut(s) 1061
GsuI CTGGAG 1 cut(s) 1261
HaeII RGCGCY 1 cut(s) 245
HaeIII GGCC 1 cut(s) 1109
HapII CCGG 2 cut(s) 47, 1361
HhaI GCGC 1 cut(s) 244
Hin1II CATG 5 cut(s) 271, 435, 849, 1003, 1030
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HincII GTYRAC 2 cut(s) 573, 733
HindII GTYRAC 2 cut(s) 573, 733
HindIII AAGCTT 1 cut(s) 755
HinfI GANTC 6 cut(s) 196, 347, 379, 520, 701, 1178
HpaII CCGG 2 cut(s) 47, 1361
HphI GGTGA 2 cut(s) 786, 1408
Hpy166II GTNNAC 2 cut(s) 573, 733
Hpy188I TCNGA 8 cut(s) 28, 89, 753, 946, 1121, 1137, 1177, 1329
Hpy8I GTNNAC 2 cut(s) 573, 733
Hpy99I CGWCG 1 cut(s) 1056
HpyAV CCTTC 5 cut(s) 85, 997, 1176, 1249, 1387
HpyCH4III ACNGT 1 cut(s) 928
HpyF10VI GCNNNNNNNGC 2 cut(s) 630, 911
HpyF3I CTNAG 4 cut(s) 142, 758, 945, 1118
Hsp92II CATG 5 cut(s) 271, 435, 849, 1003, 1030
HspAI GCGC 1 cut(s) 242
Kpn2I TCCGGA 1 cut(s) 46
KpnI GGTACC 1 cut(s) 805
LguI GCTCTTC 1 cut(s) 402
LmnI GCTCC 4 cut(s) 239, 355, 829, 1330
Lsp1109I GCAGC 3 cut(s) 240, 441, 611
LweI GCATC 4 cut(s) 154, 193, 282, 1394
MabI ACCWGGT 1 cut(s) 726
MaeI CTAG 4 cut(s) 494, 621, 957, 1170
MaeIII GTNAC 3 cut(s) 474, 560, 1396
MbiI CCGCTC 1 cut(s) 807
MboII GAAGA 8 cut(s) 35, 419, 848, 1106, 1134, 1185, 1348, 1351
MflI RGATCY 4 cut(s) 91, 612, 976, 1364
MlyI GAGTC 4 cut(s) 341, 514, 710, 1172
MnlI CCTC 7 cut(s) 89, 149, 628, 940, 1120, 1244, 1283
Mph1103I ATGCAT 1 cut(s) 635
MroI TCCGGA 1 cut(s) 46
MslI CAYNNNNRTG 1 cut(s) 1430
MspA1I CMGCKG 2 cut(s) 1252, 1281
MspI CCGG 2 cut(s) 47, 1361
MspR9I CCNGG 5 cut(s) 728, 798, 878, 1362, 1439
MvaI CCWGG 4 cut(s) 728, 798, 878, 1439
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 2 cut(s) 630, 911
NciI CCSGG 1 cut(s) 1362
NlaIII CATG 5 cut(s) 271, 435, 849, 1003, 1030
NlaIV GGNNCC 2 cut(s) 803, 1366
NmuCI GTSAC 2 cut(s) 474, 1396
NsiI ATGCAT 1 cut(s) 635
NspI RCATGY 1 cut(s) 271
PciI ACATGT 1 cut(s) 267
PciSI GCTCTTC 1 cut(s) 402
PfeI GAWTC 2 cut(s) 196, 379
PflFI GACNNNGTC 1 cut(s) 728
PflMI CCANNNNNTGG 1 cut(s) 877
PfoI TCCNGGA 2 cut(s) 1360, 1437
PkrI GCNGC 4 cut(s) 230, 332, 456, 626
PleI GAGTC 4 cut(s) 341, 514, 709, 1172
PpsI GAGTC 4 cut(s) 341, 514, 709, 1172
PscI ACATGT 1 cut(s) 267
PshAI GACNNNNGTC 1 cut(s) 1050
PshBI ATTAAT 1 cut(s) 309
Psp6I CCWGG 4 cut(s) 726, 796, 876, 1437
PspEI GGTNACC 1 cut(s) 1396
PspFI CCCAGC 1 cut(s) 1057
PspGI CCWGG 4 cut(s) 726, 796, 876, 1437
PspN4I GGNNCC 2 cut(s) 803, 1366
PspPI GGNCC 1 cut(s) 724
PsuI RGATCY 4 cut(s) 91, 612, 976, 1364
PsyI GACNNNGTC 1 cut(s) 728
PvuII CAGCTG 1 cut(s) 1252
RsaI GTAC 3 cut(s) 803, 1149, 1310
RsaNI GTAC 3 cut(s) 802, 1148, 1309
RseI CAYNNNNRTG 1 cut(s) 1430
SalI GTCGAC 1 cut(s) 731
SapI GCTCTTC 1 cut(s) 402
SatI GCNGC 4 cut(s) 229, 331, 455, 625
Sau96I GGNCC 1 cut(s) 724
SchI GAGTC 4 cut(s) 341, 514, 710, 1172
ScrFI CCNGG 5 cut(s) 728, 798, 878, 1362, 1439
SexAI ACCWGGT 1 cut(s) 726
SfaNI GCATC 4 cut(s) 154, 193, 282, 1394
SfcI CTRYAG 1 cut(s) 102
SinI GGWCC 1 cut(s) 724
SmiMI CAYNNNNRTG 1 cut(s) 1430
SmlI CTYRAG 1 cut(s) 917
SmoI CTYRAG 1 cut(s) 917
SsiI CCGC 3 cut(s) 330, 805, 1281
SspI AATATT 2 cut(s) 160, 676
SspMI CTAG 4 cut(s) 494, 621, 957, 1170
StyD4I CCNGG 5 cut(s) 726, 796, 876, 1360, 1437
StyI CCWWGG 1 cut(s) 1143
TaaI ACNGT 1 cut(s) 928
TaqI TCGA 5 cut(s) 364, 732, 812, 1317, 1418
TatI WGTACW 1 cut(s) 1308
TauI GCSGC 1 cut(s) 333
TfiI GAWTC 2 cut(s) 196, 379
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 2 cut(s) 474, 1396
TseI GCWGC 3 cut(s) 228, 454, 624
Tsp45I GTSAC 2 cut(s) 474, 1396
TspDTI ATGAA 8 cut(s) 371, 609, 898, 1015, 1016, 1185, 1231, 1305
TspGWI ACGGA 2 cut(s) 548, 1340
TspRI CASTG 1 cut(s) 159
Tth111I GACNNNGTC 1 cut(s) 728
Van91I CCANNNNNTGG 1 cut(s) 877
VpaK11BI GGWCC 1 cut(s) 724
VspI ATTAAT 1 cut(s) 309
XapI RAATTY 4 cut(s) 131, 892, 1330, 1443
XbaI TCTAGA 1 cut(s) 1169
XceI RCATGY 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 732
XspI CTAG 4 cut(s) 494, 621, 957, 1170
Zsp2I ATGCAT 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.