Rh1DG108500

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0004213
Physical Location & Seq
Forward (+)
19941434 .. 19945085
3652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG108500.1

Sequence Viewer

Length: 738 bp
ATGAATTCTGAAACTCCTACATCACCAGATTCTACTGCAATTAACTCTACTCAACATCCTACGAAAACTGCATTACCTATCAAAACCAACCATCAGCGTAATGACATGGAAATTGCTTATCAGGATGTGAAAGTACCTCGAACTGGCCACGAACCTTGGATGCTCATGTCTTACAAAAACAAGAAAGTCAACTCTAGCAAGATTCCTGCTAACAGTGCCCCTATGCAATCTGGTTCAAGGTTCGCTTTACTTGAGACATTTGTTGAAGGTGAGGATAATGTTCTTACTGAGGCTATGTTCAAAGAATGTTCCATGCAAGCACCATTAGACATTCTTCGCCTGGTTATTGTACGTACGAGCTTCAGTAATGACATAGTTCCAATAACGGCATCTGTTCTCAGAAGAACTGGTTATCTGAATAGCTTGGTGATAAGTACTTCTAAACCATTTAGATCGGACCCTAAATCTACATTGCAGTCTTCATCTGGATTTGATATGGGATACTGGAAATTGCAAAACCTCACTTTCATTTACCAGCTGAAGGATGTGAGCATAGACCTCTCCAGCGGGTCTAATGAAATTGAGTTTGCAAAGTACATTCTCGAGAATGCTCCGAATTTGAAGAAGATCGTGATCCGTCATCATCCGGGATCCCAACAATCTAATATCGTGGTAGGGAAGGTGACCAGATGCAAGATCATTTCGAGAGCCATTATTGTGATCCAGGAAATTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

245

Amino Acids

27.45

Weight (kDa)

9.39

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 191 - 212 4.7e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 567
AclWI GGATC 4 cut(s) 628, 645, 658, 715
AcoI YGGCCR 1 cut(s) 145
AcsI RAATTY 3 cut(s) 4, 616, 729
AcuI CTGAAG 2 cut(s) 346, 560
AfaI GTAC 5 cut(s) 135, 351, 355, 436, 596
AfiI CCNNNNNNNGG 2 cut(s) 143, 541
AgsI TTSAA 4 cut(s) 237, 266, 301, 622
AjnI CCWGG 2 cut(s) 339, 723
AluBI AGCT 3 cut(s) 360, 423, 538
AluI AGCT 3 cut(s) 360, 423, 538
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 4 cut(s) 628, 645, 658, 715
Ama87I CYCGRG 1 cut(s) 602
AoxI GGCC 1 cut(s) 145
ApoI RAATTY 3 cut(s) 4, 616, 729
AspS9I GGNCC 1 cut(s) 457
AsuC2I CCSGG 1 cut(s) 648
AsuHPI GGTGA 4 cut(s) 15, 281, 439, 694
AvaI CYCGRG 1 cut(s) 602
AvaII GGWCC 1 cut(s) 457
BaeGI GKGCMC 1 cut(s) 220
BalI TGGCCA 1 cut(s) 147
BamHI GGATCC 1 cut(s) 650
BbsI GAAGAC 1 cut(s) 471
BccI CCATC 1 cut(s) 99
BceAI ACGGC 1 cut(s) 402
BciT130I CCWGG 2 cut(s) 341, 725
BciVI GTATCC 1 cut(s) 494
BcnI CCSGG 1 cut(s) 648
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 1 cut(s) 195
BfuI GTATCC 1 cut(s) 494
BmcAI AGTACT 1 cut(s) 436
Bme1390I CCNGG 3 cut(s) 341, 648, 725
Bme18I GGWCC 1 cut(s) 457
BmeT110I CYCGRG 1 cut(s) 602
BmgT120I GGNCC 1 cut(s) 457
BmiI GGNNCC 2 cut(s) 459, 652
BmrFI CCNGG 3 cut(s) 341, 648, 725
BmsI GCATC 3 cut(s) 150, 398, 680
BpiI GAAGAC 1 cut(s) 471
BpmI CTGGAG 1 cut(s) 547
BpuEI CTTGAG 1 cut(s) 272
BpuMI CCSGG 1 cut(s) 648
BsaAI YACGTR 1 cut(s) 353
BsaBI GATNNNNATC 1 cut(s) 632
BsaJI CCNNGG 1 cut(s) 155
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 541
Bse1I ACTGG 3 cut(s) 148, 412, 509
Bse3DI GCAATG 1 cut(s) 470
Bse8I GATNNNNATC 1 cut(s) 632
BseBI CCWGG 2 cut(s) 341, 725
BseDI CCNNGG 1 cut(s) 155
BseGI GGATG 5 cut(s) 55, 130, 165, 550, 643
BseJI GATNNNNATC 1 cut(s) 632
BseLI CCNNNNNNNGG 2 cut(s) 143, 541
BseMI GCAATG 1 cut(s) 470
BseMII CTCAG 2 cut(s) 279, 412
BseNI ACTGG 3 cut(s) 148, 412, 509
BseSI GKGCMC 1 cut(s) 220
BshFI GGCC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 602
BsiSI CCGG 1 cut(s) 647
BsiWI CGTACG 1 cut(s) 353
BslI CCNNNNNNNGG 2 cut(s) 143, 541
BsmAI GTCTC 1 cut(s) 248
BsmI GAATGC 1 cut(s) 613
BsnI GGCC 1 cut(s) 147
BsoBI CYCGRG 1 cut(s) 602
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 6 cut(s) 452, 627, 633, 650, 696, 720
BspACI CCGC 1 cut(s) 567
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 2 cut(s) 280, 411
BspLI GGNNCC 2 cut(s) 459, 652
BspPI GGATC 4 cut(s) 628, 645, 658, 715
BsrDI GCAATG 1 cut(s) 470
BsrI ACTGG 3 cut(s) 148, 412, 509
BssECI CCNNGG 1 cut(s) 155
BssMI GATC 6 cut(s) 452, 627, 633, 650, 696, 720
BssT1I CCWWGG 1 cut(s) 155
Bst2UI CCWGG 2 cut(s) 341, 725
Bst4CI ACNGT 1 cut(s) 215
BstBAI YACGTR 1 cut(s) 353
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 2 cut(s) 288, 398
BstEII GGTNACC 1 cut(s) 682
BstF5I GGATG 5 cut(s) 55, 130, 165, 550, 643
BstKTI GATC 6 cut(s) 455, 630, 636, 653, 699, 723
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 6 cut(s) 452, 627, 633, 650, 696, 720
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNI CCWGG 2 cut(s) 341, 725
BstPI GGTNACC 1 cut(s) 682
BstSCI CCNGG 3 cut(s) 339, 646, 723
BstSLI GKGCMC 1 cut(s) 220
BstSNI TACGTA 1 cut(s) 353
BstV2I GAAGAC 1 cut(s) 471
BstX2I RGATCY 1 cut(s) 650
BstYI RGATCY 1 cut(s) 650
BsuI GTATCC 1 cut(s) 494
BsuRI GGCC 1 cut(s) 147
BtsCI GGATG 5 cut(s) 55, 130, 165, 550, 643
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 318
Cfr13I GGNCC 1 cut(s) 457
Csp6I GTAC 5 cut(s) 134, 350, 354, 435, 595
CspCI CAANNNNNGTGG 2 cut(s) 137, 172
CviAII CATG 3 cut(s) 106, 166, 313
CviJI RGCY 6 cut(s) 147, 293, 360, 423, 538, 710
CviKI_1 RGCY 6 cut(s) 147, 293, 360, 423, 538, 710
CviQI GTAC 5 cut(s) 134, 350, 354, 435, 595
DdeI CTNAG 2 cut(s) 288, 398
DpnI GATC 6 cut(s) 454, 629, 635, 652, 698, 722
DpnII GATC 6 cut(s) 452, 627, 633, 650, 696, 720
EaeI YGGCCR 1 cut(s) 145
Eco105I TACGTA 1 cut(s) 353
Eco130I CCWWGG 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 457
Eco57I CTGAAG 2 cut(s) 346, 560
Eco88I CYCGRG 1 cut(s) 602
Eco91I GGTNACC 1 cut(s) 682
EcoO65I GGTNACC 1 cut(s) 682
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 339, 723
EcoT14I CCWWGG 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 155
FaeI CATG 3 cut(s) 109, 169, 316
FaiI YATR 8 cut(s) 107, 167, 224, 296, 314, 374, 497, 554
FalI AAGNNNNNCTT 2 cut(s) 229, 261
FatI CATG 3 cut(s) 105, 165, 312
FauI CCCGC 1 cut(s) 560
FokI GGATG 5 cut(s) 42, 137, 172, 557, 630
FspBI CTAG 1 cut(s) 195
GsuI CTGGAG 1 cut(s) 547
HaeIII GGCC 1 cut(s) 147
HapII CCGG 1 cut(s) 647
Hin1II CATG 3 cut(s) 109, 169, 316
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 2 cut(s) 29, 202
HpaII CCGG 1 cut(s) 647
HphI GGTGA 4 cut(s) 15, 281, 439, 694
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 5 cut(s) 10, 401, 417, 457, 615
Hpy188III TCNNGA 6 cut(s) 122, 486, 602, 604, 631, 705
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 3 cut(s) 260, 535, 673
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 8 cut(s) 38, 71, 226, 316, 475, 514, 590, 693
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 2 cut(s) 288, 398
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 3 cut(s) 109, 169, 316
Kzo9I GATC 6 cut(s) 452, 627, 633, 650, 696, 720
LmnI GCTCC 1 cut(s) 616
LweI GCATC 3 cut(s) 150, 398, 680
MaeI CTAG 1 cut(s) 195
MaeII ACGT 1 cut(s) 352
MaeIII GTNAC 1 cut(s) 682
MalI GATC 6 cut(s) 454, 629, 635, 652, 698, 722
MboI GATC 6 cut(s) 452, 627, 633, 650, 696, 720
MboII GAAGA 5 cut(s) 326, 414, 471, 634, 637
MflI RGATCY 1 cut(s) 650
MhlI GDGCHC 1 cut(s) 220
MlsI TGGCCA 1 cut(s) 147
MluCI AATT 7 cut(s) 4, 39, 111, 509, 579, 616, 729
MluNI TGGCCA 1 cut(s) 147
MnlI CCTC 5 cut(s) 147, 265, 283, 530, 569
Mox20I TGGCCA 1 cut(s) 147
MscI TGGCCA 1 cut(s) 147
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 716
Msp20I TGGCCA 1 cut(s) 147
MspA1I CMGCKG 2 cut(s) 538, 567
MspI CCGG 1 cut(s) 647
MspR9I CCNGG 3 cut(s) 341, 648, 725
Mva1269I GAATGC 1 cut(s) 613
MvaI CCWGG 2 cut(s) 341, 725
MwoI GCNNNNNNNGC 1 cut(s) 215
NciI CCSGG 1 cut(s) 648
NdeII GATC 6 cut(s) 452, 627, 633, 650, 696, 720
NlaIII CATG 3 cut(s) 109, 169, 316
NlaIV GGNNCC 2 cut(s) 459, 652
NmuCI GTSAC 1 cut(s) 682
PaeR7I CTCGAG 1 cut(s) 602
PctI GAATGC 1 cut(s) 613
PfeI GAWTC 2 cut(s) 29, 202
Pfl23II CGTACG 1 cut(s) 353
PfoI TCCNGGA 2 cut(s) 646, 723
Ppu21I YACGTR 1 cut(s) 353
Psp6I CCWGG 2 cut(s) 339, 723
PspEI GGTNACC 1 cut(s) 682
PspGI CCWGG 2 cut(s) 339, 723
PspLI CGTACG 1 cut(s) 353
PspN4I GGNNCC 2 cut(s) 459, 652
PspPI GGNCC 1 cut(s) 457
PsuI RGATCY 1 cut(s) 650
PvuII CAGCTG 1 cut(s) 538
RsaI GTAC 5 cut(s) 135, 351, 355, 436, 596
RsaNI GTAC 5 cut(s) 134, 350, 354, 435, 595
RseI CAYNNNNRTG 1 cut(s) 716
SaqAI TTAA 1 cut(s) 42
Sau3AI GATC 6 cut(s) 452, 627, 633, 650, 696, 720
Sau96I GGNCC 1 cut(s) 457
ScaI AGTACT 1 cut(s) 436
ScrFI CCNGG 3 cut(s) 341, 648, 725
SduI GDGCHC 1 cut(s) 220
SfaNI GCATC 3 cut(s) 150, 398, 680
Sfr274I CTCGAG 1 cut(s) 602
SinI GGWCC 1 cut(s) 457
SlaI CTCGAG 1 cut(s) 602
SmiMI CAYNNNNRTG 1 cut(s) 716
SmlI CTYRAG 2 cut(s) 251, 602
SmoI CTYRAG 2 cut(s) 251, 602
SnaBI TACGTA 1 cut(s) 353
Sse9I AATT 7 cut(s) 4, 39, 111, 509, 579, 616, 729
SsiI CCGC 1 cut(s) 567
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 3 cut(s) 339, 646, 723
StyI CCWWGG 1 cut(s) 155
TaaI ACNGT 1 cut(s) 215
TaiI ACGT 1 cut(s) 355
TaqI TCGA 3 cut(s) 139, 603, 704
TasI AATT 7 cut(s) 4, 39, 111, 509, 579, 616, 729
TatI WGTACW 2 cut(s) 434, 594
TfiI GAWTC 2 cut(s) 29, 202
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 682
Tsp45I GTSAC 1 cut(s) 682
TspDTI ATGAA 4 cut(s) 17, 471, 517, 591
TspGWI ACGGA 1 cut(s) 626
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 457
XapI RAATTY 3 cut(s) 4, 616, 729
XhoI CTCGAG 1 cut(s) 602
XspI CTAG 1 cut(s) 195
ZrmI AGTACT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.