Rh1CG100200

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0004213
Physical Location & Seq
Forward (+)
21000512 .. 21003267
2756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG100200.1

Sequence Viewer

Length: 1419 bp
ATGATGCTGTGCAAGAAGTTATGGTCAGACAGATTTAGTAATCTTCCGGACGAAGTTGCTCATCATATTCTTTCCTTCCTCGGTGTCAGAGATCTCGCTTCTGTAGGTGCTGTGTCCAAAAGATGCAGAGAATTTTATCTCTCAGTTCCATCAGTGAATCTTGATGCAAGTTGTTATCTAAAAACCAGCCGCAATTTACCAGCGCTGATGTGTTTCTGGGATAGGTACATGTTTCAGCGTGGTGTTAATAAGATGCAACGCTTTTACATTAATTGGACTTTCTTCACACGCGGAGTAAATAAAGGCATTGAGGAGGTGGAGGAGAAATATCGAATAATCTCATGGATTCATAACGCAGTAAGGTGTAATGTTGAAGAGCTTAACCTTAATTTCACAGCATGTGGTGGATTCACGTTTGTGTTGCCGTCTTGCCTATATCAGTCACAATCTTTCAAGTCTCTAGTATTAAAATGCTGGAATGAGATGACTCTTGAAGCACCACCAGTATCTCTGTTCTGCAATCTCCATTACCTGCAGTTGACTTCTGTTAGAATAGTAGATGAAAGGTTTTGCAAGTGGATCTCCTCTAGCTGCAAATGCATCAAGGAATTACATCTTATTCAAGTTAAAGGGATTAAAAATATGACCATTCAAAGCTCGTCATTGGAAATATTTAAGTTTGTTGGTATGGACCTGGTCGAGCTTAATATCTCCGGTCAGAAACTTATTTTTATTGACATAAACTGGAAATTTTGTTCTTCACCTGGGAACTGCTCATTAAATATTTGTGCTCCAAATCTGGAAGCTTTGACATGGGTGGGCAATGTCTTGAATAGCCAAAATTTGGGGAAGTTACCTAATTTGCAAAGCACTCTCATTTTTCTTCAGCCTACGGTAGATCACAATTTGTCTGAGGTCTTTTCCAGTATATGCAGGACTAAAGTTCTTGGTCTAAATGAGAACACCATGAAGGCTATGTTCAAAGAATGTTCCATGCAAGCACCATTAGACATTCTTCGCCTGGTTATTGTACTTACGAGCTTCAGTAATGTCATAGTTCCAATAACGGCATCTGTTCTCAGAAGAACTGGTTATCTGAATAGCTTGGTGATAAGTACTTCTAAACCATTTAGATCGGACCCTAAATCTACATTGCAGTCTTCATCTGGATTTGATATGGGATACTGGAAATTGCAAAACCTCACTTTCATTTACCAGCTGAAGGATGTGAGCATAGACCTCTCCAGCGGTTCTAATGAAATTGAGTTTGCAAAGTACATTCTCGAGAATGCTCCGAATTTGAAGAAGATCGTGATCCGTCATCATCCGGGATCCCAACAATCAAATATCGTGGTAGGGAAGGTGACCAGATGCAAGATCATTTCGAGAGCCATTATTGTGATCCAGGAAATTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

472

Amino Acids

53.72

Weight (kDa)

9.12

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 12 - 44 1.2e-07 F-box-like
F-box PF00646 12 - 44 2e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 110 - 467 1.7e-06 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 114 - 283 2.8e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 540
AccB7I CCANNNNNTGG 1 cut(s) 844
AccII CGCG 1 cut(s) 291
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 3 cut(s) 190, 291, 1248
AclWI GGATC 5 cut(s) 587, 1309, 1326, 1339, 1396
AcsI RAATTY 5 cut(s) 131, 749, 841, 1297, 1410
AcuI CTGAAG 3 cut(s) 869, 1027, 1241
AfaI GTAC 4 cut(s) 227, 1032, 1117, 1277
AfeI AGCGCT 1 cut(s) 204
AfiI CCNNNNNNNGG 2 cut(s) 844, 1222
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 8 cut(s) 374, 454, 494, 623, 653, 832, 982, 1303
AjnI CCWGG 4 cut(s) 693, 763, 1020, 1404
AleI CACNNNNGTG 1 cut(s) 416
AloI GAACNNNNNNTCC 2 cut(s) 739, 771
AluBI AGCT 8 cut(s) 379, 591, 657, 703, 806, 1041, 1104, 1219
AluI AGCT 8 cut(s) 379, 591, 657, 703, 806, 1041, 1104, 1219
Alw21I GWGCWC 1 cut(s) 793
Alw26I GTCTC 1 cut(s) 462
AlwI GGATC 5 cut(s) 587, 1309, 1326, 1339, 1396
Ama87I CYCGRG 1 cut(s) 1283
Aor13HI TCCGGA 1 cut(s) 46
Aor51HI AGCGCT 1 cut(s) 204
ApeKI GCWGC 1 cut(s) 591
ApoI RAATTY 5 cut(s) 131, 749, 841, 1297, 1410
AseI ATTAAT 1 cut(s) 270
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 2 cut(s) 691, 1138
AsuC2I CCSGG 1 cut(s) 1329
AsuHPI GGTGA 3 cut(s) 753, 1120, 1375
AvaI CYCGRG 1 cut(s) 1283
AvaII GGWCC 2 cut(s) 691, 1138
BamHI GGATCC 1 cut(s) 1331
BbsI GAAGAC 1 cut(s) 1152
Bbv12I GWGCWC 1 cut(s) 793
BbvI GCAGC 1 cut(s) 578
BccI CCATC 1 cut(s) 157
BceAI ACGGC 2 cut(s) 409, 1083
BciT130I CCWGG 4 cut(s) 695, 765, 1022, 1406
BciVI GTATCC 1 cut(s) 1175
BcnI CCSGG 1 cut(s) 1329
BcoDI GTCTC 1 cut(s) 462
BfaI CTAG 2 cut(s) 461, 588
BfmI CTRYAG 2 cut(s) 102, 533
BfoI RGCGCY 1 cut(s) 206
BfuAI ACCTGC 1 cut(s) 540
BfuI GTATCC 1 cut(s) 1175
BglII AGATCT 1 cut(s) 91
BisI GCNGC 2 cut(s) 190, 592
BlsI GCNGC 2 cut(s) 191, 593
BmcAI AGTACT 1 cut(s) 1117
Bme1390I CCNGG 5 cut(s) 695, 765, 1022, 1329, 1406
Bme18I GGWCC 2 cut(s) 691, 1138
BmeT110I CYCGRG 1 cut(s) 1283
BmgT120I GGNCC 2 cut(s) 691, 1138
BmiI GGNNCC 2 cut(s) 1140, 1333
BmrFI CCNGG 5 cut(s) 695, 765, 1022, 1329, 1406
BmsI GCATC 6 cut(s) 113, 154, 243, 609, 1079, 1361
BpiI GAAGAC 1 cut(s) 1152
BpmI CTGGAG 1 cut(s) 1228
BpuMI CCSGG 1 cut(s) 1329
BsaBI GATNNNNATC 1 cut(s) 1313
BsaJI CCNNGG 2 cut(s) 79, 764
BsaWI WCCGGW 2 cut(s) 46, 713
Bsc4I CCNNNNNNNGG 2 cut(s) 844, 1222
Bse1I ACTGG 5 cut(s) 503, 749, 924, 1093, 1190
Bse3DI GCAATG 2 cut(s) 829, 1151
Bse8I GATNNNNATC 1 cut(s) 1313
BseAI TCCGGA 1 cut(s) 46
BseBI CCWGG 4 cut(s) 695, 765, 1022, 1406
BseDI CCNNGG 2 cut(s) 79, 764
BseGI GGATG 2 cut(s) 1231, 1324
BseJI GATNNNNATC 1 cut(s) 1313
BseLI CCNNNNNNNGG 2 cut(s) 844, 1222
BseMI GCAATG 2 cut(s) 829, 1151
BseMII CTCAG 3 cut(s) 156, 903, 1093
BseNI ACTGG 5 cut(s) 503, 749, 924, 1093, 1190
BseRI GAGGAG 3 cut(s) 326, 335, 574
BseXI GCAGC 1 cut(s) 578
Bsh1236I CGCG 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 793
BsiHKCI CYCGRG 1 cut(s) 1283
BsiSI CCGG 3 cut(s) 47, 714, 1328
BslI CCNNNNNNNGG 2 cut(s) 844, 1222
BsmAI GTCTC 1 cut(s) 462
BsmI GAATGC 1 cut(s) 1294
BsoBI CYCGRG 1 cut(s) 1283
Bsp1286I GDGCHC 1 cut(s) 793
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 9 cut(s) 91, 579, 898, 1133, 1308, 1314, 1331, 1377, 1401
BspACI CCGC 3 cut(s) 190, 291, 1248
BspCNI CTCAG 3 cut(s) 155, 904, 1092
BspEI TCCGGA 1 cut(s) 46
BspFNI CGCG 1 cut(s) 291
BspLI GGNNCC 2 cut(s) 1140, 1333
BspMAI CTGCAG 1 cut(s) 537
BspMI ACCTGC 1 cut(s) 540
BspPI GGATC 5 cut(s) 587, 1309, 1326, 1339, 1396
BspQI GCTCTTC 1 cut(s) 369
BsrDI GCAATG 2 cut(s) 829, 1151
BsrI ACTGG 5 cut(s) 503, 749, 924, 1093, 1190
BssECI CCNNGG 2 cut(s) 79, 764
BssMI GATC 9 cut(s) 91, 579, 898, 1133, 1308, 1314, 1331, 1377, 1401
Bst2UI CCWGG 4 cut(s) 695, 765, 1022, 1406
Bst4CI ACNGT 1 cut(s) 895
Bst6I CTCTTC 1 cut(s) 369
BstC8I GCNNGC 1 cut(s) 999
BstDEI CTNAG 3 cut(s) 142, 912, 1079
BstEII GGTNACC 1 cut(s) 1363
BstF5I GGATG 2 cut(s) 1231, 1324
BstFNI CGCG 1 cut(s) 291
BstH2I RGCGCY 1 cut(s) 206
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 9 cut(s) 94, 582, 901, 1136, 1311, 1317, 1334, 1380, 1404
BstMAI GTCTC 1 cut(s) 462
BstMBI GATC 9 cut(s) 91, 579, 898, 1133, 1308, 1314, 1331, 1377, 1401
BstMWI GCNNNNNNNGC 1 cut(s) 597
BstNI CCWGG 4 cut(s) 695, 765, 1022, 1406
BstNSI RCATGY 2 cut(s) 232, 402
BstPI GGTNACC 1 cut(s) 1363
BstSCI CCNGG 5 cut(s) 693, 763, 1020, 1327, 1404
BstSFI CTRYAG 2 cut(s) 102, 533
BstUI CGCG 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 578
BstV2I GAAGAC 1 cut(s) 1152
BstX2I RGATCY 3 cut(s) 91, 579, 1331
BstYI RGATCY 3 cut(s) 91, 579, 1331
BsuI GTATCC 1 cut(s) 1175
BtsCI GGATG 2 cut(s) 1231, 1324
BtsIMutI CAGTG 1 cut(s) 159
BveI ACCTGC 1 cut(s) 540
Cac8I GCNNGC 1 cut(s) 999
CfoI GCGC 1 cut(s) 205
Cfr13I GGNCC 2 cut(s) 691, 1138
CsiI ACCWGGT 1 cut(s) 693
Csp6I GTAC 4 cut(s) 226, 1031, 1116, 1276
CspCI CAANNNNNGTGG 2 cut(s) 1332, 1367
CviAII CATG 6 cut(s) 229, 342, 399, 813, 967, 994
CviQI GTAC 4 cut(s) 226, 1031, 1116, 1276
DdeI CTNAG 3 cut(s) 142, 912, 1079
DpnI GATC 9 cut(s) 93, 581, 900, 1135, 1310, 1316, 1333, 1379, 1403
DpnII GATC 9 cut(s) 91, 579, 898, 1133, 1308, 1314, 1331, 1377, 1401
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco47I GGWCC 2 cut(s) 691, 1138
Eco47III AGCGCT 1 cut(s) 204
Eco57I CTGAAG 3 cut(s) 869, 1027, 1241
Eco88I CYCGRG 1 cut(s) 1283
Eco91I GGTNACC 1 cut(s) 1363
EcoO65I GGTNACC 1 cut(s) 1363
EcoRII CCWGG 4 cut(s) 693, 763, 1020, 1404
EcoT22I ATGCAT 1 cut(s) 602
FaeI CATG 6 cut(s) 232, 345, 402, 816, 970, 997
FatI CATG 6 cut(s) 228, 341, 398, 812, 966, 993
Fnu4HI GCNGC 2 cut(s) 190, 592
FokI GGATG 2 cut(s) 1238, 1311
Fsp4HI GCNGC 2 cut(s) 190, 592
FspBI CTAG 2 cut(s) 461, 588
GlaI GCGC 1 cut(s) 204
GluI GCNGC 2 cut(s) 190, 592
GsuI CTGGAG 1 cut(s) 1228
HaeII RGCGCY 1 cut(s) 206
HapII CCGG 3 cut(s) 47, 714, 1328
HhaI GCGC 1 cut(s) 205
Hin1II CATG 6 cut(s) 232, 345, 402, 816, 970, 997
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HincII GTYRAC 1 cut(s) 540
HindII GTYRAC 1 cut(s) 540
HindIII AAGCTT 1 cut(s) 804
HinfI GANTC 4 cut(s) 157, 346, 408, 487
HpaII CCGG 3 cut(s) 47, 714, 1328
HphI GGTGA 3 cut(s) 753, 1120, 1375
Hpy166II GTNNAC 1 cut(s) 540
Hpy188I TCNGA 8 cut(s) 28, 89, 720, 913, 1082, 1098, 1138, 1296
Hpy8I GTNNAC 1 cut(s) 540
HpyAV CCTTC 4 cut(s) 85, 964, 1216, 1354
HpyCH4III ACNGT 1 cut(s) 895
HpyCH4IV ACGT 1 cut(s) 413
HpyF10VI GCNNNNNNNGC 1 cut(s) 597
HpyF3I CTNAG 3 cut(s) 142, 912, 1079
HpySE526I ACGT 1 cut(s) 413
Hsp92II CATG 6 cut(s) 232, 345, 402, 816, 970, 997
HspAI GCGC 1 cut(s) 203
Kpn2I TCCGGA 1 cut(s) 46
Kzo9I GATC 9 cut(s) 91, 579, 898, 1133, 1308, 1314, 1331, 1377, 1401
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 2 cut(s) 796, 1297
Lsp1109I GCAGC 1 cut(s) 578
LweI GCATC 6 cut(s) 113, 154, 243, 609, 1079, 1361
MabI ACCWGGT 1 cut(s) 693
MaeI CTAG 2 cut(s) 461, 588
MaeII ACGT 1 cut(s) 413
MaeIII GTNAC 3 cut(s) 441, 852, 1363
MalI GATC 9 cut(s) 93, 581, 900, 1135, 1310, 1316, 1333, 1379, 1403
MboI GATC 9 cut(s) 91, 579, 898, 1133, 1308, 1314, 1331, 1377, 1401
MflI RGATCY 3 cut(s) 91, 579, 1331
MhlI GDGCHC 1 cut(s) 793
MlyI GAGTC 1 cut(s) 481
MnlI CCTC 8 cut(s) 89, 304, 307, 313, 595, 907, 1211, 1250
Mph1103I ATGCAT 1 cut(s) 602
MroI TCCGGA 1 cut(s) 46
MslI CAYNNNNRTG 2 cut(s) 416, 1397
MspA1I CMGCKG 2 cut(s) 1219, 1248
MspI CCGG 3 cut(s) 47, 714, 1328
MspR9I CCNGG 5 cut(s) 695, 765, 1022, 1329, 1406
Mva1269I GAATGC 1 cut(s) 1294
MvaI CCWGG 4 cut(s) 695, 765, 1022, 1406
MvnI CGCG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 597
NciI CCSGG 1 cut(s) 1329
NdeII GATC 9 cut(s) 91, 579, 898, 1133, 1308, 1314, 1331, 1377, 1401
NlaIII CATG 6 cut(s) 232, 345, 402, 816, 970, 997
NlaIV GGNNCC 2 cut(s) 1140, 1333
NmuCI GTSAC 2 cut(s) 441, 1363
NsiI ATGCAT 1 cut(s) 602
NspI RCATGY 2 cut(s) 232, 402
OliI CACNNNNGTG 1 cut(s) 416
PaeR7I CTCGAG 1 cut(s) 1283
PciI ACATGT 1 cut(s) 228
PciSI GCTCTTC 1 cut(s) 369
PctI GAATGC 1 cut(s) 1294
PfeI GAWTC 3 cut(s) 157, 346, 408
PflFI GACNNNGTC 1 cut(s) 695
PflMI CCANNNNNTGG 1 cut(s) 844
PfoI TCCNGGA 2 cut(s) 1327, 1404
PkrI GCNGC 2 cut(s) 191, 593
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
PscI ACATGT 1 cut(s) 228
PshBI ATTAAT 1 cut(s) 270
Psp6I CCWGG 4 cut(s) 693, 763, 1020, 1404
PspEI GGTNACC 1 cut(s) 1363
PspGI CCWGG 4 cut(s) 693, 763, 1020, 1404
PspN4I GGNNCC 2 cut(s) 1140, 1333
PspPI GGNCC 2 cut(s) 691, 1138
PstI CTGCAG 1 cut(s) 537
PsuI RGATCY 3 cut(s) 91, 579, 1331
PsyI GACNNNGTC 1 cut(s) 695
PvuII CAGCTG 1 cut(s) 1219
RsaI GTAC 4 cut(s) 227, 1032, 1117, 1277
RsaNI GTAC 4 cut(s) 226, 1031, 1116, 1276
RseI CAYNNNNRTG 2 cut(s) 416, 1397
SapI GCTCTTC 1 cut(s) 369
SatI GCNGC 2 cut(s) 190, 592
Sau3AI GATC 9 cut(s) 91, 579, 898, 1133, 1308, 1314, 1331, 1377, 1401
Sau96I GGNCC 2 cut(s) 691, 1138
ScaI AGTACT 1 cut(s) 1117
SchI GAGTC 1 cut(s) 481
ScrFI CCNGG 5 cut(s) 695, 765, 1022, 1329, 1406
SduI GDGCHC 1 cut(s) 793
SexAI ACCWGGT 1 cut(s) 693
SfaNI GCATC 6 cut(s) 113, 154, 243, 609, 1079, 1361
SfcI CTRYAG 2 cut(s) 102, 533
Sfr274I CTCGAG 1 cut(s) 1283
SinI GGWCC 2 cut(s) 691, 1138
SlaI CTCGAG 1 cut(s) 1283
SmiMI CAYNNNNRTG 2 cut(s) 416, 1397
SmlI CTYRAG 1 cut(s) 1283
SmoI CTYRAG 1 cut(s) 1283
SsiI CCGC 3 cut(s) 190, 291, 1248
SspI AATATT 2 cut(s) 672, 784
SspMI CTAG 2 cut(s) 461, 588
StyD4I CCNGG 5 cut(s) 693, 763, 1020, 1327, 1404
TaaI ACNGT 1 cut(s) 895
TaiI ACGT 1 cut(s) 416
TaqI TCGA 4 cut(s) 331, 699, 1284, 1385
TatI WGTACW 3 cut(s) 1030, 1115, 1275
TauI GCSGC 1 cut(s) 192
TfiI GAWTC 3 cut(s) 157, 346, 408
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 2 cut(s) 441, 1363
TseI GCWGC 1 cut(s) 591
Tsp45I GTSAC 2 cut(s) 441, 1363
TspDTI ATGAA 6 cut(s) 338, 576, 983, 1152, 1198, 1272
TspGWI ACGGA 1 cut(s) 1307
TspRI CASTG 1 cut(s) 159
Tth111I GACNNNGTC 1 cut(s) 695
Van91I CCANNNNNTGG 1 cut(s) 844
VpaK11BI GGWCC 2 cut(s) 691, 1138
VspI ATTAAT 1 cut(s) 270
XapI RAATTY 5 cut(s) 131, 749, 841, 1297, 1410
XceI RCATGY 2 cut(s) 232, 402
XhoI CTCGAG 1 cut(s) 1283
XspI CTAG 2 cut(s) 461, 588
ZrmI AGTACT 1 cut(s) 1117
Zsp2I ATGCAT 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.