Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004213

Physical Location & Seq

Genomic Coordinates Reverse (-)

48715284 .. 48730593

Gene Structure 15310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00320200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCCACACGGCTTCGACCAATCACAGAATGCCATTTCGTTTTTAGATCTTACTAACGTATTGTGTCCAAAAGATGCAGAGTTTCATCTGTCAGTTCCATTAGTGAATCTTGATGCAAGTTGTGCAAAAACCAACCACATAATAGCAGAGCTGATGATGCGTTTCTGGGATAAATACCTGCTTCAGCGTGGTGATAATAAGATGCAGCGCTTCTACATTGATTGGAATTTCTTTACACGCTACACTGAAAATAAAGTGTCTGAGGAGCAATATCGAATAAACTCATGGATTCAAAATGCAGCCAACACTAATCAAGCCGGCGAGCTTGCTAATTTCCCCGCCGTCAACACCGTAGTGGGAATTGAAGAGGAAGAGGCTTTTGTTGAAAAGCCTATCCCGAGGGAGCAACCGTCGAGCGGACTATCGCGATCCTTAGGGAGAATATCGAGAACCATAACAAGAAGCCGGATGCGGATCTCGCCGCAGAAACCGCAAAGTCGAAAGGCTCCTCCGCGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBD

Protein Analysis

173

Amino Acids

19.95

Weight (kDa)

8.97

Isoelectric Point (pI)

56.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004213)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16170 FvH4_6g18953 FvH4_7g04740 FvH4_7g04740
malus_domestica	MD02G1269000.v1.1 MD04G1145300.v1.1 MD04G1145500.v1.1 MD04G1145600.v1.1 MD04G1145900.v1.1 MD12G1159100.v1.1
prunus_persica	Prupe.2G052100_v2.0.a1 Prupe.7G105700_v2.0.a1 Prupe.7G106400_v2.0.a1
pyrus_communis	pycom04g13150
rosa_chinensis	RchiOBHm_Chr1g0330111
rosa_laevigata	RLG00000029830
rosa_multiflora	Rmu_sc0004673.1_g000009
rosa_roxburghii	Rroxscaffold_4G00320200 Rroxscaffold_4G00320300 Rroxscaffold_4G00320320 Rroxscaffold_4G00320330
rosa_rugosa	Rorug01G0086000 Rorug01G0086100 Rorug01G0086200 Rorug02G0131100 Rorug03G0137300
rosa_samantha	Rh1AG104600 Rh1AG104700 Rh1BG082800 Rh1CG100200 Rh1DG107500 Rh1DG108500
rosa_wichuraiana	Rw0G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	186
AccBSI	CCGCTC	1 cut(s)	417
AccII	CGCG	2 cut(s)	427, 514
AciI	CCGC	6 cut(s)	339, 417, 472, 482, 491, 512
AclWI	GGATC	2 cut(s)	423, 482
AcsI	RAATTY	1 cut(s)	226
AcuI	CTGAAG	1 cut(s)	167
AfeI	AGCGCT	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	416
AgsI	TTSAA	3 cut(s)	293, 365, 386
AleI	CACNNNNGTG	1 cut(s)	353
AluBI	AGCT	2 cut(s)	151, 325
AluI	AGCT	2 cut(s)	151, 325
AlwI	GGATC	2 cut(s)	423, 482
Ama87I	CYCGRG	1 cut(s)	397
Aor51HI	AGCGCT	1 cut(s)	209
ApeKI	GCWGC	2 cut(s)	205, 299
ApoI	RAATTY	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	203
AvaI	CYCGRG	1 cut(s)	397
AxyI	CCTNAGG	1 cut(s)	433
BbvI	GCAGC	2 cut(s)	217, 311
BceAI	ACGGC	2 cut(s)	25, 326
BfoI	RGCGCY	1 cut(s)	211
BfuAI	ACCTGC	1 cut(s)	186
BglII	AGATCT	1 cut(s)	46
BisI	GCNGC	3 cut(s)	206, 300, 482
BlsI	GCNGC	3 cut(s)	207, 301, 483
BmeT110I	CYCGRG	1 cut(s)	397
BmiI	GGNNCC	1 cut(s)	507
BmsI	GCATC	5 cut(s)	64, 103, 147, 192, 459
BsaBI	GATNNNNATC	1 cut(s)	473
BsaJI	CCNNGG	1 cut(s)	398
BsaXI	ACNNNNNCTCC	2 cut(s)	395, 425
Bsc4I	CCNNNNNNNGG	1 cut(s)	416
Bse118I	RCCGGY	1 cut(s)	317
Bse21I	CCTNAGG	1 cut(s)	433
Bse8I	GATNNNNATC	1 cut(s)	473
BseDI	CCNNGG	1 cut(s)	398
BseGI	GGATG	1 cut(s)	474
BseJI	GATNNNNATC	1 cut(s)	473
BseLI	CCNNNNNNNGG	1 cut(s)	416
BseMII	CTCAG	1 cut(s)	252
BseRI	GAGGAG	2 cut(s)	278, 498
BseXI	GCAGC	2 cut(s)	217, 311
Bsh1236I	CGCG	2 cut(s)	427, 514
BsiHKCI	CYCGRG	1 cut(s)	397
BsiSI	CCGG	2 cut(s)	318, 466
BslI	CCNNNNNNNGG	1 cut(s)	416
BsmI	GAATGC	1 cut(s)	34
BsoBI	CYCGRG	1 cut(s)	397
Bsp143I	GATC	3 cut(s)	46, 428, 474
Bsp68I	TCGCGA	1 cut(s)	427
BspACI	CCGC	6 cut(s)	339, 417, 472, 482, 491, 512
BspCNI	CTCAG	1 cut(s)	253
BspFNI	CGCG	2 cut(s)	427, 514
BspLI	GGNNCC	1 cut(s)	507
BspMI	ACCTGC	1 cut(s)	186
BspPI	GGATC	2 cut(s)	423, 482
BsrBI	CCGCTC	1 cut(s)	417
BsrFI	RCCGGY	1 cut(s)	317
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	398
BssMI	GATC	3 cut(s)	46, 428, 474
Bst4CI	ACNGT	2 cut(s)	352, 411
Bst6I	CTCTTC	2 cut(s)	360, 366
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstC8I	GCNNGC	3 cut(s)	319, 323, 327
BstDEI	CTNAG	2 cut(s)	261, 433
BstF5I	GGATG	1 cut(s)	474
BstFNI	CGCG	2 cut(s)	427, 514
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	3 cut(s)	49, 431, 477
BstMBI	GATC	3 cut(s)	46, 428, 474
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 157, 478, 490
BstUI	CGCG	2 cut(s)	427, 514
BstV1I	GCAGC	2 cut(s)	217, 311
BstX2I	RGATCY	2 cut(s)	46, 474
BstYI	RGATCY	2 cut(s)	46, 474
Bsu36I	CCTNAGG	1 cut(s)	433
BtsCI	GGATG	1 cut(s)	474
BtsIMutI	CAGTG	1 cut(s)	243
BtuMI	TCGCGA	1 cut(s)	427
BveI	ACCTGC	1 cut(s)	186
Cac8I	GCNNGC	3 cut(s)	319, 323, 327
CfoI	GCGC	1 cut(s)	210
Cfr10I	RCCGGY	1 cut(s)	317
CviAII	CATG	1 cut(s)	285
CviJI	RGCY	9 cut(s)	12, 151, 302, 317, 325, 377, 391, 465, 506
CviKI_1	RGCY	9 cut(s)	12, 151, 302, 317, 325, 377, 391, 465, 506
DdeI	CTNAG	2 cut(s)	261, 433
DpnI	GATC	3 cut(s)	48, 430, 476
DpnII	GATC	3 cut(s)	46, 428, 474
Eam1104I	CTCTTC	2 cut(s)	360, 366
EarI	CTCTTC	2 cut(s)	360, 366
Eco47III	AGCGCT	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	167
Eco81I	CCTNAGG	1 cut(s)	433
Eco88I	CYCGRG	1 cut(s)	397
FaeI	CATG	1 cut(s)	288
FaiI	YATR	3 cut(s)	140, 286, 455
FatI	CATG	1 cut(s)	284
FauI	CCCGC	1 cut(s)	346
Fnu4HI	GCNGC	3 cut(s)	206, 300, 482
FokI	GGATG	1 cut(s)	481
Fsp4HI	GCNGC	3 cut(s)	206, 300, 482
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	3 cut(s)	206, 300, 482
HaeII	RGCGCY	1 cut(s)	211
HapII	CCGG	2 cut(s)	318, 466
HhaI	GCGC	1 cut(s)	210
Hin1II	CATG	1 cut(s)	288
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	2 cut(s)	106, 289
HpaII	CCGG	2 cut(s)	318, 466
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	4 cut(s)	110, 397, 426, 447
Hpy8I	GTNNAC	1 cut(s)	346
Hpy99I	CGWCG	1 cut(s)	415
HpyCH4III	ACNGT	2 cut(s)	352, 411
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	5 cut(s)	77, 116, 125, 205, 299
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 157, 478, 490
HpyF3I	CTNAG	2 cut(s)	261, 433
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	288
HspAI	GCGC	1 cut(s)	208
KroI	GCCGGC	1 cut(s)	317
KroNI	GCCGGC	1 cut(s)	319
Kzo9I	GATC	3 cut(s)	46, 428, 474
LmnI	GCTCC	3 cut(s)	265, 403, 511
LpnPI	CCDG	4 cut(s)	151, 191, 331, 479
Lsp1109I	GCAGC	2 cut(s)	217, 311
LweI	GCATC	5 cut(s)	64, 103, 147, 192, 459
MaeII	ACGT	1 cut(s)	57
MalI	GATC	3 cut(s)	48, 430, 476
MbiI	CCGCTC	1 cut(s)	417
MboI	GATC	3 cut(s)	46, 428, 474
MboII	GAAGA	2 cut(s)	377, 383
MflI	RGATCY	2 cut(s)	46, 474
MluCI	AATT	3 cut(s)	226, 331, 360
MnlI	CCTC	5 cut(s)	256, 361, 367, 393, 519
MroNI	GCCGGC	1 cut(s)	317
MslI	CAYNNNNRTG	1 cut(s)	353
MspI	CCGG	2 cut(s)	318, 466
Mva1269I	GAATGC	1 cut(s)	34
MvnI	CGCG	2 cut(s)	427, 514
MwoI	GCNNNNNNNGC	4 cut(s)	122, 157, 478, 490
NaeI	GCCGGC	1 cut(s)	319
NdeII	GATC	3 cut(s)	46, 428, 474
NgoMIV	GCCGGC	1 cut(s)	317
NlaIII	CATG	1 cut(s)	288
NlaIV	GGNNCC	1 cut(s)	507
NruI	TCGCGA	1 cut(s)	427
OliI	CACNNNNGTG	1 cut(s)	353
PctI	GAATGC	1 cut(s)	34
PdiI	GCCGGC	1 cut(s)	319
PfeI	GAWTC	2 cut(s)	106, 289
PkrI	GCNGC	3 cut(s)	207, 301, 483
PspN4I	GGNNCC	1 cut(s)	507
PsuI	RGATCY	2 cut(s)	46, 474
RruI	TCGCGA	1 cut(s)	427
RseI	CAYNNNNRTG	1 cut(s)	353
SatI	GCNGC	3 cut(s)	206, 300, 482
Sau3AI	GATC	3 cut(s)	46, 428, 474
SetI	ASST	4 cut(s)	60, 153, 180, 327
SfaNI	GCATC	5 cut(s)	64, 103, 147, 192, 459
SmiMI	CAYNNNNRTG	1 cut(s)	353
Sse9I	AATT	3 cut(s)	226, 331, 360
SsiI	CCGC	6 cut(s)	339, 417, 472, 482, 491, 512
TaaI	ACNGT	2 cut(s)	352, 411
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	5 cut(s)	15, 274, 413, 446, 499
TasI	AATT	3 cut(s)	226, 331, 360
TauI	GCSGC	1 cut(s)	484
TfiI	GAWTC	2 cut(s)	106, 289
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	2 cut(s)	205, 299
TspDTI	ATGAA	1 cut(s)	74
TspRI	CASTG	1 cut(s)	250
XapI	RAATTY	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.