Rorug01G0086100

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004213
Physical Location & Seq
Reverse (-)
13938334 .. 13945690
7357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0086100.1

Sequence Viewer

Length: 1287 bp
ATGCCTTGCTTTCCCCAACCCGGTTCCGTCACCGTTTGCGAAATCAATCGCGACCTAATCACTTCTGAAAACCTCTCGGATGATGGAGCCAAAGAAGCTTATGGAAAGATTCTGGGAATGACATTCAGCCCGGTTCCATTTCAATCCGAAGTTGGGCCTCCACCGAGTCCGGACCGCGAAACAGCTCCAACAAAAGGACTCCTACAAAGCCTATTCCATCCTAACCATGTGAACTTGTTACCGGAAGTTGATCTTCAGGGATTGAGCTGGCACCCACATAAACATGTTATAGCATTTATATCTGGCTCAAATCAAGTTCTAGTTCGAGATTACGAGGATTCAGAAGGGAAGGAGCCGTGCATTTTGGCTAATGAATCGCAGAAAGACGTCAAGGTACTTGAATGGAGGCCAAATGGTGGGAGGACACTTTCTGTGGCATGTAGTGGTGGGATCTGCATTTGGGCCGCTTCTTTCCCTGGCAGTGTTGCATCTGTGAGATCTGGTGCTTCTTCCTTCTTGGGAACTCTCTCCAGAGGTTCTGGAATCCGATATACTTTGGTGGATTTTCTTCGAAGTCATAACGAGGAACAGATTACTGCACTTTCCTGGAGTCCTGATGGAAGATATTTGGCTTCTGGCTCTTATGAGAGTTCATCATTTACCATATGGGATGTTGCTCAAGGGATTGGGACACCTATTCGACGCGGACTAGCTGGCATATCAATACTGAAGTGGTCACCAACTGGCGATTACTTTTTCTCCGCAAAATTTGATGGAACATTTTATCTTTGGGAGACAAACACATGGGTATCTGAATCATGGTCGTCAACTAGTGGCTTTGTAAAGGGAGCATCATGGGATCCTGATGGGCGTATGATACTTCTTGCCTTCTCTAAATCTTCAACTTTGGGGTCCATTCACTTTGCTTCAAAGCCGCCATCACTGGATGCGCACCTATTGCCTGTCGAACTACCAGAGATTACGGCCTTAACAAACAGTCAGGGCATTGAGAAGATAGCTTGGGATGCTTCGGGAGAGCGATTGGCTGTATCTTTTAAAGATTGCGATGAGTTGTATAGAGGTCTGATTGCCATCTATGATGTTAGAAGGACTCCTCTTATCTCTGCATCATTAATTGGATTTATCAGAGGACCTGGGGAGTATCCAAAGCCTATAGCATTTTCATTCCATGACAAGTTTAAGCAAGGACCATTGCTTTCTGTGTGTTGGAGTAGTGGATTTTGCTGTACCTATCCTCTGATATTTCGTTCCCATGTTCTTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

428

Amino Acids

46.75

Weight (kDa)

5.83

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_IFT140_1st PF23383 83 - 162 3.7e-06 IFT140 first beta-propeller
Beta-prop_Aladin PF25460 85 - 420 4.2e-57 Aladin seven-bladed propeller
WD40 PF00400 187 - 224 5.3e-06 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 194 - 294 7.1e-10 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 196 - 350 9.4e-13 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 390
Acc16I TGCGCA 1 cut(s) 951
AccB1I GGYRCC 1 cut(s) 270
AccB7I CCANNNNNTGG 1 cut(s) 416
AccII CGCG 3 cut(s) 51, 177, 705
AccIII TCCGGA 1 cut(s) 169
AciI CCGC 5 cut(s) 175, 465, 705, 762, 935
AclWI GGATC 3 cut(s) 458, 854, 867
AcsI RAATTY 1 cut(s) 767
AcuI CTGAAG 2 cut(s) 239, 749
AcyI GRCGYC 1 cut(s) 387
AfaI GTAC 2 cut(s) 396, 1249
AfiI CCNNNNNNNGG 4 cut(s) 20, 153, 194, 416
AflIII ACRYGT 1 cut(s) 283
AgsI TTSAA 4 cut(s) 143, 401, 903, 930
AhlI ACTAGT 1 cut(s) 830
AjnI CCWGG 3 cut(s) 475, 605, 1153
AluBI AGCT 5 cut(s) 98, 185, 267, 713, 1019
AluI AGCT 5 cut(s) 98, 185, 267, 713, 1019
Alw26I GTCTC 1 cut(s) 788
AlwI GGATC 3 cut(s) 458, 854, 867
Aor13HI TCCGGA 1 cut(s) 169
AoxI GGCC 4 cut(s) 155, 407, 462, 984
ApoI RAATTY 1 cut(s) 767
AseI ATTAAT 1 cut(s) 1133
AspLEI GCGC 1 cut(s) 952
AspS9I GGNCC 6 cut(s) 155, 172, 462, 912, 1151, 1208
AsuC2I CCSGG 2 cut(s) 21, 131
AsuHPI GGTGA 2 cut(s) 22, 729
AsuII TTCGAA 1 cut(s) 571
AvaII GGWCC 4 cut(s) 172, 912, 1151, 1208
BaeI ACNNNNGTAYC 2 cut(s) 792, 825
BamHI GGATCC 1 cut(s) 859
BanI GGYRCC 1 cut(s) 270
BccI CCATC 7 cut(s) 77, 225, 611, 767, 860, 946, 1100
BceAI ACGGC 2 cut(s) 340, 999
BciT130I CCWGG 3 cut(s) 477, 607, 1155
BciVI GTATCC 1 cut(s) 1173
BcnI CCSGG 2 cut(s) 21, 131
BcoDI GTCTC 1 cut(s) 788
BcuI ACTAGT 1 cut(s) 830
BfaI CTAG 3 cut(s) 320, 710, 831
BfmI CTRYAG 1 cut(s) 1173
BfuI GTATCC 1 cut(s) 1173
BglII AGATCT 1 cut(s) 497
BisI GCNGC 2 cut(s) 465, 935
BlsI GCNGC 2 cut(s) 466, 936
Bme1390I CCNGG 5 cut(s) 21, 131, 477, 607, 1155
Bme18I GGWCC 4 cut(s) 172, 912, 1151, 1208
BmgT120I GGNCC 6 cut(s) 155, 172, 462, 912, 1151, 1208
BmiI GGNNCC 7 cut(s) 25, 88, 135, 272, 354, 861, 913
BmrFI CCNGG 5 cut(s) 21, 131, 477, 607, 1155
BmsI GCATC 5 cut(s) 497, 860, 937, 1015, 1136
BpmI CTGGAG 2 cut(s) 514, 628
Bpu14I TTCGAA 1 cut(s) 571
BpuEI CTTGAG 1 cut(s) 663
BpuMI CCSGG 2 cut(s) 21, 131
BsaBI GATNNNNATC 1 cut(s) 1091
BsaHI GRCGYC 1 cut(s) 387
BsaJI CCNNGG 2 cut(s) 475, 1154
BsaWI WCCGGW 2 cut(s) 169, 241
BsaXI ACNNNNNCTCC 2 cut(s) 743, 773
Bsc4I CCNNNNNNNGG 4 cut(s) 20, 153, 194, 416
Bse1I ACTGG 2 cut(s) 748, 948
Bse3DI GCAATG 1 cut(s) 1211
Bse8I GATNNNNATC 1 cut(s) 1091
BseAI TCCGGA 1 cut(s) 169
BseBI CCWGG 3 cut(s) 477, 607, 1155
BseDI CCNNGG 2 cut(s) 475, 1154
BseGI GGATG 5 cut(s) 85, 217, 676, 952, 1030
BseJI GATNNNNATC 1 cut(s) 1091
BseLI CCNNNNNNNGG 4 cut(s) 20, 153, 194, 416
BseMI GCAATG 1 cut(s) 1211
BseNI ACTGG 2 cut(s) 748, 948
BseRI GAGGAG 1 cut(s) 1104
BsgI GTGCAG 1 cut(s) 582
Bsh1236I CGCG 3 cut(s) 51, 177, 705
BshFI GGCC 4 cut(s) 157, 409, 464, 986
BshNI GGYRCC 1 cut(s) 270
BsiSI CCGG 4 cut(s) 21, 131, 170, 242
BslFI GGGAC 1 cut(s) 703
BslI CCNNNNNNNGG 4 cut(s) 20, 153, 194, 416
BsmAI GTCTC 1 cut(s) 788
BsmFI GGGAC 1 cut(s) 703
BsnI GGCC 4 cut(s) 157, 409, 464, 986
Bsp119I TTCGAA 1 cut(s) 571
Bsp13I TCCGGA 1 cut(s) 169
Bsp143I GATC 4 cut(s) 250, 450, 497, 859
Bsp68I TCGCGA 1 cut(s) 51
BspACI CCGC 5 cut(s) 175, 465, 705, 762, 935
BspANI GGCC 4 cut(s) 157, 409, 464, 986
BspEI TCCGGA 1 cut(s) 169
BspFNI CGCG 3 cut(s) 51, 177, 705
BspLI GGNNCC 7 cut(s) 25, 88, 135, 272, 354, 861, 913
BspPI GGATC 3 cut(s) 458, 854, 867
BspT104I TTCGAA 1 cut(s) 571
BspT107I GGYRCC 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 1211
BsrI ACTGG 2 cut(s) 748, 948
BssECI CCNNGG 2 cut(s) 475, 1154
BssMI GATC 4 cut(s) 250, 450, 497, 859
BssNI GRCGYC 1 cut(s) 387
Bst2UI CCWGG 3 cut(s) 477, 607, 1155
Bst4CI ACNGT 2 cut(s) 34, 998
BstACI GRCGYC 1 cut(s) 387
BstAPI GCANNNNNTGC 1 cut(s) 958
BstBI TTCGAA 1 cut(s) 571
BstC8I GCNNGC 2 cut(s) 269, 715
BstDEI CTNAG 1 cut(s) 1284
BstEII GGTNACC 1 cut(s) 735
BstF5I GGATG 5 cut(s) 85, 217, 676, 952, 1030
BstFNI CGCG 3 cut(s) 51, 177, 705
BstHHI GCGC 1 cut(s) 952
BstKTI GATC 4 cut(s) 253, 453, 500, 862
BstMAI GTCTC 1 cut(s) 788
BstMBI GATC 4 cut(s) 250, 450, 497, 859
BstMWI GCNNNNNNNGC 3 cut(s) 95, 958, 1025
BstNI CCWGG 3 cut(s) 477, 607, 1155
BstNSI RCATGY 2 cut(s) 287, 441
BstPI GGTNACC 1 cut(s) 735
BstSCI CCNGG 5 cut(s) 19, 129, 475, 605, 1153
BstSFI CTRYAG 1 cut(s) 1173
BstUI CGCG 3 cut(s) 51, 177, 705
BstX2I RGATCY 3 cut(s) 450, 497, 859
BstYI RGATCY 3 cut(s) 450, 497, 859
BsuI GTATCC 1 cut(s) 1173
BsuRI GGCC 4 cut(s) 157, 409, 464, 986
BtgZI GCGATG 1 cut(s) 1080
BtsCI GGATG 5 cut(s) 85, 217, 676, 952, 1030
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 2 cut(s) 487, 941
BtuMI TCGCGA 1 cut(s) 51
Cac8I GCNNGC 2 cut(s) 269, 715
CfoI GCGC 1 cut(s) 952
Cfr13I GGNCC 6 cut(s) 155, 172, 462, 912, 1151, 1208
CpoI CGGWCCG 1 cut(s) 172
CseI GACGC 1 cut(s) 711
Csp6I GTAC 2 cut(s) 395, 1248
CspI CGGWCCG 1 cut(s) 172
CviAII CATG 8 cut(s) 227, 284, 438, 804, 819, 855, 1190, 1274
CviQI GTAC 2 cut(s) 395, 1248
DdeI CTNAG 1 cut(s) 1284
DpnI GATC 4 cut(s) 252, 452, 499, 861
DpnII GATC 4 cut(s) 250, 450, 497, 859
DraI TTTAAA 1 cut(s) 1057
Eco47I GGWCC 4 cut(s) 172, 912, 1151, 1208
Eco57I CTGAAG 2 cut(s) 239, 749
Eco91I GGTNACC 1 cut(s) 735
EcoO109I RGGNCCY 1 cut(s) 1151
EcoO65I GGTNACC 1 cut(s) 735
EcoRII CCWGG 3 cut(s) 475, 605, 1153
FaeI CATG 8 cut(s) 230, 287, 441, 807, 822, 858, 1193, 1277
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FaqI GGGAC 1 cut(s) 703
FatI CATG 8 cut(s) 226, 283, 437, 803, 818, 854, 1189, 1273
FauNDI CATATG 1 cut(s) 665
Fnu4HI GCNGC 2 cut(s) 465, 935
FokI GGATG 5 cut(s) 92, 204, 683, 959, 1037
Fsp4HI GCNGC 2 cut(s) 465, 935
FspAI RTGCGCAY 1 cut(s) 951
FspBI CTAG 3 cut(s) 320, 710, 831
FspI TGCGCA 1 cut(s) 951
GlaI GCGC 1 cut(s) 951
GluI GCNGC 2 cut(s) 465, 935
GsuI CTGGAG 2 cut(s) 514, 628
HaeIII GGCC 4 cut(s) 157, 409, 464, 986
HapII CCGG 4 cut(s) 21, 131, 170, 242
HgaI GACGC 1 cut(s) 711
HhaI GCGC 1 cut(s) 952
Hin1I GRCGYC 1 cut(s) 387
Hin1II CATG 8 cut(s) 230, 287, 441, 807, 822, 858, 1193, 1277
Hin6I GCGC 1 cut(s) 950
HinP1I GCGC 1 cut(s) 950
HincII GTYRAC 1 cut(s) 828
HindII GTYRAC 1 cut(s) 828
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 9 cut(s) 109, 166, 198, 338, 374, 543, 610, 815, 1111
HpaII CCGG 4 cut(s) 21, 131, 170, 242
HphI GGTGA 2 cut(s) 22, 729
Hpy166II GTNNAC 2 cut(s) 232, 828
Hpy188I TCNGA 9 cut(s) 67, 79, 148, 343, 548, 814, 1086, 1148, 1260
Hpy188III TCNNGA 8 cut(s) 50, 170, 326, 531, 540, 614, 863, 1032
Hpy8I GTNNAC 2 cut(s) 232, 828
Hpy99I CGWCG 1 cut(s) 705
HpyAV CCTTC 5 cut(s) 338, 343, 523, 898, 1101
HpyCH4III ACNGT 2 cut(s) 34, 998
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 5 cut(s) 360, 456, 488, 599, 1127
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 958, 1025
HpyF3I CTNAG 1 cut(s) 1284
HpySE526I ACGT 1 cut(s) 387
Hsp92I GRCGYC 1 cut(s) 387
Hsp92II CATG 8 cut(s) 230, 287, 441, 807, 822, 858, 1193, 1277
HspAI GCGC 1 cut(s) 950
Kpn2I TCCGGA 1 cut(s) 169
Kzo9I GATC 4 cut(s) 250, 450, 497, 859
LmnI GCTCC 4 cut(s) 86, 190, 352, 848
LweI GCATC 5 cut(s) 497, 860, 937, 1015, 1136
MaeI CTAG 3 cut(s) 320, 710, 831
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 3 cut(s) 28, 237, 735
MalI GATC 4 cut(s) 252, 452, 499, 861
MboI GATC 4 cut(s) 250, 450, 497, 859
MboII GAAGA 7 cut(s) 245, 501, 560, 633, 891, 1024, 1271
MflI RGATCY 3 cut(s) 450, 497, 859
MluCI AATT 2 cut(s) 767, 1134
MlyI GAGTC 4 cut(s) 175, 192, 619, 1105
MmeI TCCRAC 2 cut(s) 212, 1208
MroI TCCGGA 1 cut(s) 169
MseI TTAA 4 cut(s) 989, 1056, 1133, 1200
MslI CAYNNNNRTG 1 cut(s) 282
MspI CCGG 4 cut(s) 21, 131, 170, 242
MspR9I CCNGG 5 cut(s) 21, 131, 477, 607, 1155
MvaI CCWGG 3 cut(s) 477, 607, 1155
MvnI CGCG 3 cut(s) 51, 177, 705
MwoI GCNNNNNNNGC 3 cut(s) 95, 958, 1025
NciI CCSGG 2 cut(s) 21, 131
NdeI CATATG 1 cut(s) 665
NdeII GATC 4 cut(s) 250, 450, 497, 859
NlaIII CATG 8 cut(s) 230, 287, 441, 807, 822, 858, 1193, 1277
NlaIV GGNNCC 7 cut(s) 25, 88, 135, 272, 354, 861, 913
NmuCI GTSAC 2 cut(s) 28, 735
NruI TCGCGA 1 cut(s) 51
NsbI TGCGCA 1 cut(s) 951
NspI RCATGY 2 cut(s) 287, 441
NspV TTCGAA 1 cut(s) 571
PciI ACATGT 1 cut(s) 283
PfeI GAWTC 5 cut(s) 109, 338, 374, 543, 815
PflMI CCANNNNNTGG 1 cut(s) 416
PfoI TCCNGGA 1 cut(s) 605
PkrI GCNGC 2 cut(s) 466, 936
PleI GAGTC 4 cut(s) 174, 192, 618, 1105
PpsI GAGTC 4 cut(s) 174, 192, 618, 1105
PpuMI RGGWCCY 1 cut(s) 1151
PscI ACATGT 1 cut(s) 283
PshBI ATTAAT 1 cut(s) 1133
Psp5II RGGWCCY 1 cut(s) 1151
Psp6I CCWGG 3 cut(s) 475, 605, 1153
PspEI GGTNACC 1 cut(s) 735
PspGI CCWGG 3 cut(s) 475, 605, 1153
PspN4I GGNNCC 7 cut(s) 25, 88, 135, 272, 354, 861, 913
PspPI GGNCC 6 cut(s) 155, 172, 462, 912, 1151, 1208
PspPPI RGGWCCY 1 cut(s) 1151
PsuI RGATCY 3 cut(s) 450, 497, 859
RruI TCGCGA 1 cut(s) 51
RsaI GTAC 2 cut(s) 396, 1249
RsaNI GTAC 2 cut(s) 395, 1248
RseI CAYNNNNRTG 1 cut(s) 282
Rsr2I CGGWCCG 1 cut(s) 172
RsrII CGGWCCG 1 cut(s) 172
SaqAI TTAA 4 cut(s) 989, 1056, 1133, 1200
SatI GCNGC 2 cut(s) 465, 935
Sau3AI GATC 4 cut(s) 250, 450, 497, 859
Sau96I GGNCC 6 cut(s) 155, 172, 462, 912, 1151, 1208
SchI GAGTC 4 cut(s) 175, 192, 619, 1105
ScrFI CCNGG 5 cut(s) 21, 131, 477, 607, 1155
SfaNI GCATC 5 cut(s) 497, 860, 937, 1015, 1136
SfcI CTRYAG 1 cut(s) 1173
SfuI TTCGAA 1 cut(s) 571
SinI GGWCC 4 cut(s) 172, 912, 1151, 1208
SmiMI CAYNNNNRTG 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 678
SmoI CTYRAG 1 cut(s) 678
SpeI ACTAGT 1 cut(s) 830
Sse9I AATT 2 cut(s) 767, 1134
SsiI CCGC 5 cut(s) 175, 465, 705, 762, 935
SspMI CTAG 3 cut(s) 320, 710, 831
StyD4I CCNGG 5 cut(s) 19, 129, 475, 605, 1153
TaaI ACNGT 2 cut(s) 34, 998
TaiI ACGT 1 cut(s) 390
TaqI TCGA 4 cut(s) 325, 571, 700, 966
TasI AATT 2 cut(s) 767, 1134
TauI GCSGC 2 cut(s) 467, 937
TfiI GAWTC 5 cut(s) 109, 338, 374, 543, 815
Tru1I TTAA 4 cut(s) 989, 1056, 1133, 1200
Tru9I TTAA 4 cut(s) 989, 1056, 1133, 1200
TscAI CASTG 2 cut(s) 487, 948
TseFI GTSAC 2 cut(s) 28, 735
Tsp45I GTSAC 2 cut(s) 28, 735
TspDTI ATGAA 3 cut(s) 387, 642, 1173
TspGWI ACGGA 1 cut(s) 16
TspRI CASTG 2 cut(s) 487, 948
Van91I CCANNNNNTGG 1 cut(s) 416
VpaK11BI GGWCC 4 cut(s) 172, 912, 1151, 1208
VspI ATTAAT 1 cut(s) 1133
XapI RAATTY 1 cut(s) 767
XceI RCATGY 2 cut(s) 287, 441
XspI CTAG 3 cut(s) 320, 710, 831
ZraI GACGTC 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.