FvH4_1g18460

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000933
Physical Location & Seq
Forward (+)
10776280 .. 10777240
961 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18460.t1

Sequence Viewer

Length: 483 bp
ATGGTTGGAGCTGGAGCTCCATGGTGTATGTTGCTTATTCTTTCTTTGAAGTTGCTAAGCTATAGGACAGATCTTTGGTCTCTTCGGAACACAAAAGTAACATACGACTTTAAAACCAGTGTATCACGAGTGATTTTCAGTTCGGCGTGCTGGCTTAAAGATAGAAGTCTGGATGAATTTCGTGGTCATTCTTCTGAAAAAATGAACCGGGTGAAAAAAGTGTTCTCTTCTTGTTGGTTACTTGACTCTTATAATCATGTTAAGTACAAATCAAGTAACCTTTTTACTATTCCATCTGATTTTACTTGCTCTCCGCTGAGAAATGAGGATTTTCGGATAATGCAGCTTCCTATGGCTTCCATTGCACAAGATGAGAGTCTGACGCTGTTTTCATGGAGAAGGATGCCTGTGTTTATGGGTGTATCCGACTCGGTCTGCGCACACTGTGCAGTGTTGGGTGATGGAAAAGTATGGAGATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

161

Amino Acids

18.4

Weight (kDa)

9.17

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 252
Acc16I TGCGCA 1 cut(s) 439
AciI CCGC 1 cut(s) 314
AcsI RAATTY 1 cut(s) 176
AdeI CACNNNGTG 1 cut(s) 446
AfaI GTAC 1 cut(s) 266
AgsI TTSAA 1 cut(s) 49
AluBI AGCT 4 cut(s) 11, 17, 60, 346
AluI AGCT 4 cut(s) 11, 17, 60, 346
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 343
ApoI RAATTY 1 cut(s) 176
AspLEI GCGC 1 cut(s) 440
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 2 cut(s) 223, 470
BaeI ACNNNNGTAYC 2 cut(s) 105, 138
BanII GRGCYC 1 cut(s) 19
BauI CACGAG 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 355
BccI CCATC 2 cut(s) 301, 455
BciVI GTATCC 1 cut(s) 433
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 61
BfuI GTATCC 1 cut(s) 433
BglII AGATCT 1 cut(s) 70
BisI GCNGC 1 cut(s) 344
BlpI GCTNAGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 345
Bme1390I CCNGG 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 209
BmsI GCATC 2 cut(s) 393, 467
BpmI CTGGAG 1 cut(s) 33
Bpu1102I GCTNAGC 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 209
BsaI GGTCTC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 20
BsaXI ACNNNNNCTCC 2 cut(s) 295, 325
Bse1I ACTGG 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 360
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 2 cut(s) 178, 408
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 355
BsgI GTGCAG 1 cut(s) 468
BsiHKAI GWGCWC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 208
BsmAI GTCTC 1 cut(s) 84
Bso31I GGTCTC 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 1 cut(s) 70
Bsp1720I GCTNAGC 1 cut(s) 56
Bsp19I CCATGG 1 cut(s) 20
BspACI CCGC 1 cut(s) 314
BspCNI CTCAG 1 cut(s) 309
BspTNI GGTCTC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 360
BsrI ACTGG 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 1 cut(s) 70
BssSI CACGAG 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 20
Bst2BI CACGAG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 446
Bst6I CTCTTC 2 cut(s) 87, 232
BstAPI GCANNNNNTGC 1 cut(s) 446
BstC8I GCNNGC 2 cut(s) 148, 152
BstDEI CTNAG 2 cut(s) 56, 317
BstDSI CCRYGG 1 cut(s) 20
BstF5I GGATG 2 cut(s) 178, 408
BstHHI GCGC 1 cut(s) 440
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 2 cut(s) 362, 446
BstSCI CCNGG 1 cut(s) 207
BstSFI CTRYAG 1 cut(s) 61
BstV1I GCAGC 1 cut(s) 355
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuI GTATCC 1 cut(s) 433
BtgI CCRYGG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 178, 408
BtsI GCAGTG 1 cut(s) 456
BtsIMutI CAGTG 3 cut(s) 124, 442, 456
Cac8I GCNNGC 2 cut(s) 148, 152
CfoI GCGC 1 cut(s) 440
CseI GACGC 1 cut(s) 391
Csp6I GTAC 1 cut(s) 265
CviAII CATG 3 cut(s) 21, 257, 393
CviJI RGCY 6 cut(s) 11, 17, 60, 154, 346, 356
CviKI_1 RGCY 6 cut(s) 11, 17, 60, 154, 346, 356
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 2 cut(s) 56, 317
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
DraI TTTAAA 1 cut(s) 112
DraIII CACNNNGTG 1 cut(s) 446
Eam1104I CTCTTC 2 cut(s) 87, 232
EarI CTCTTC 2 cut(s) 87, 232
Ecl136II GAGCTC 1 cut(s) 17
Eco130I CCWWGG 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 19
Eco31I GGTCTC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 17
EcoICRI GAGCTC 1 cut(s) 17
EcoT14I CCWWGG 1 cut(s) 20
EcoT38I GRGCYC 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 3 cut(s) 24, 260, 396
FatI CATG 3 cut(s) 20, 256, 392
Fnu4HI GCNGC 1 cut(s) 344
FokI GGATG 2 cut(s) 185, 415
FriOI GRGCYC 1 cut(s) 19
Fsp4HI GCNGC 1 cut(s) 344
FspI TGCGCA 1 cut(s) 439
GlaI GCGC 1 cut(s) 439
GluI GCNGC 1 cut(s) 344
GsuI CTGGAG 1 cut(s) 33
HapII CCGG 1 cut(s) 208
HgaI GACGC 1 cut(s) 391
HhaI GCGC 1 cut(s) 440
Hin1II CATG 3 cut(s) 24, 260, 396
Hin6I GCGC 1 cut(s) 438
HinP1I GCGC 1 cut(s) 438
HinfI GANTC 3 cut(s) 245, 376, 428
HpaII CCGG 1 cut(s) 208
HphI GGTGA 2 cut(s) 223, 470
Hpy188I TCNGA 6 cut(s) 87, 196, 298, 336, 381, 427
Hpy188III TCNNGA 2 cut(s) 126, 170
HpyAV CCTTC 1 cut(s) 393
HpyCH4III ACNGT 1 cut(s) 446
HpyCH4V TGCA 3 cut(s) 343, 365, 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 362, 446
HpyF3I CTNAG 2 cut(s) 56, 317
Hsp92II CATG 3 cut(s) 24, 260, 396
HspAI GCGC 1 cut(s) 438
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 3 cut(s) 8, 14, 22
LpnPI CCDG 5 cut(s) 130, 136, 155, 221, 420
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 2 cut(s) 393, 467
MaeIII GTNAC 3 cut(s) 97, 237, 275
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 3 cut(s) 74, 183, 219
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 1 cut(s) 176
MlyI GAGTC 3 cut(s) 239, 385, 422
MmeI TCCRAC 1 cut(s) 450
MnlI CCTC 1 cut(s) 319
MseI TTAA 3 cut(s) 111, 156, 261
MspA1I CMGCKG 1 cut(s) 316
MspI CCGG 1 cut(s) 208
MspR9I CCNGG 1 cut(s) 209
MwoI GCNNNNNNNGC 2 cut(s) 362, 446
NciI CCSGG 1 cut(s) 209
NcoI CCATGG 1 cut(s) 20
NdeII GATC 1 cut(s) 70
NlaIII CATG 3 cut(s) 24, 260, 396
NsbI TGCGCA 1 cut(s) 439
PflFI GACNNNGTC 1 cut(s) 431
PkrI GCNGC 1 cut(s) 345
PleI GAGTC 3 cut(s) 239, 384, 422
PpsI GAGTC 3 cut(s) 239, 384, 422
PsiI TTATAA 1 cut(s) 252
Psp124BI GAGCTC 1 cut(s) 19
PsuI RGATCY 1 cut(s) 70
PsyI GACNNNGTC 1 cut(s) 431
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
SacI GAGCTC 1 cut(s) 19
SaqAI TTAA 3 cut(s) 111, 156, 261
SatI GCNGC 1 cut(s) 344
Sau3AI GATC 1 cut(s) 70
SchI GAGTC 3 cut(s) 239, 385, 422
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 1 cut(s) 19
SetI ASST 5 cut(s) 13, 19, 62, 282, 348
SfaNI GCATC 2 cut(s) 393, 467
SfcI CTRYAG 1 cut(s) 61
Sse9I AATT 1 cut(s) 176
SsiI CCGC 1 cut(s) 314
SstI GAGCTC 1 cut(s) 19
StyD4I CCNGG 1 cut(s) 207
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 446
TaqII GACCGA 1 cut(s) 421
TasI AATT 1 cut(s) 176
TatI WGTACW 1 cut(s) 264
Tru1I TTAA 3 cut(s) 111, 156, 261
Tru9I TTAA 3 cut(s) 111, 156, 261
TscAI CASTG 3 cut(s) 124, 449, 456
TseI GCWGC 1 cut(s) 343
TspDTI ATGAA 3 cut(s) 189, 218, 381
TspRI CASTG 3 cut(s) 124, 449, 456
Tth111I GACNNNGTC 1 cut(s) 431
XapI RAATTY 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.