Rmu_sc0000186.1_g000002

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000186.1
OG0000933
Physical Location & Seq
Reverse (-)
1995 .. 2862
868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000186.1_g000002.1.cds

Sequence Viewer

Length: 723 bp
atgagctttccggcgaaagcagttgcaatgtcgggctaccttcgggaagatgttattgtcaaaatcctcacaagattgcaagcgaaatccttgatgctattcaagtgtaagctccatcgttcggggcgaccggtcttcagcgcgaaagctggcatttccgtccaaagtaacggcggacggcttacatgtcttgctactcggttcttgcaatggtttcgtgtttgcctgtctcggttttcggatttaccgcctgtggaaccctacaaccgggttcttcatggatctacccgacccgtttcccgattgcgcgaggaaagttttaactataaacttgttcaacatggcattggttatctgtcggagactgacgagtataaagttacggtatcagctgattatgaggtgagggtgttgtcattgagggatcagaattggagagagatggaaactcctcatgggtctgcagttgaggctcggggggttgggctacaccagacgctacactgggtgtgtttcggctgtaatcgtgttccatacatcagtgctttggaactgagaaatgaggagtttcggacaatgcagcttcctatggcttccattggaaaagacgagagtctggcgctgttttcatggagaggatgcctgtgtgcatggcagtatgggactctgtctgtgcagacagtgcagtgttggttgatggaaaattggaaacctatggagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

240

Amino Acids

27.52

Weight (kDa)

9.16

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 143, 309
AciI CCGC 2 cut(s) 174, 248
AclWI GGATC 2 cut(s) 289, 432
AcuI CTGAAG 1 cut(s) 121
AdeI CACNNNGTG 1 cut(s) 508
AfiI CCNNNNNNNGG 2 cut(s) 121, 267
AflIII ACRYGT 1 cut(s) 185
AgeI ACCGGT 1 cut(s) 130
AgsI TTSAA 2 cut(s) 103, 338
AluBI AGCT 5 cut(s) 6, 112, 149, 392, 583
AluI AGCT 5 cut(s) 6, 112, 149, 392, 583
Alw26I GTCTC 2 cut(s) 234, 356
AlwI GGATC 2 cut(s) 289, 432
Ama87I CYCGRG 1 cut(s) 474
ApeKI GCWGC 1 cut(s) 580
AsiGI ACCGGT 1 cut(s) 130
AspLEI GCGC 3 cut(s) 143, 309, 622
AsuC2I CCSGG 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 415
AvaI CYCGRG 1 cut(s) 474
BbsI GAAGAC 1 cut(s) 127
BbvI GCAGC 1 cut(s) 592
BccI CCATC 3 cut(s) 123, 436, 691
BceAI ACGGC 2 cut(s) 187, 194
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BcnI CCSGG 1 cut(s) 269
BcoDI GTCTC 2 cut(s) 234, 356
BfmI CTRYAG 1 cut(s) 462
BfoI RGCGCY 1 cut(s) 623
BisI GCNGC 1 cut(s) 581
BlsI GCNGC 1 cut(s) 582
Bme1390I CCNGG 1 cut(s) 269
BmeT110I CYCGRG 1 cut(s) 474
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 269
BmrI ACTGGG 1 cut(s) 514
BmsI GCATC 2 cut(s) 84, 629
BmuI ACTGGG 1 cut(s) 514
BoxI GACNNNNGTC 1 cut(s) 612
BpiI GAAGAC 1 cut(s) 127
BpuMI CCSGG 1 cut(s) 269
BsaWI WCCGGW 1 cut(s) 130
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 267
Bse118I RCCGGY 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 509
Bse3DI GCAATG 2 cut(s) 33, 215
BseGI GGATG 1 cut(s) 644
BseLI CCNNNNNNNGG 2 cut(s) 121, 267
BseMI GCAATG 2 cut(s) 33, 215
BseMII CTCAG 1 cut(s) 545
BseNI ACTGG 1 cut(s) 509
BseRI GAGGAG 2 cut(s) 441, 578
BseXI GCAGC 1 cut(s) 592
BsgI GTGCAG 2 cut(s) 695, 704
Bsh1236I CGCG 2 cut(s) 143, 309
Bsh1285I CGRYCG 1 cut(s) 131
BshTI ACCGGT 1 cut(s) 130
BsiEI CGRYCG 1 cut(s) 131
BsiHKCI CYCGRG 1 cut(s) 474
BsiSI CCGG 3 cut(s) 11, 131, 268
BslFI GGGAC 1 cut(s) 676
BslI CCNNNNNNNGG 2 cut(s) 121, 267
BsmAI GTCTC 2 cut(s) 234, 356
BsmFI GGGAC 1 cut(s) 676
BsoBI CYCGRG 1 cut(s) 474
Bsp143I GATC 2 cut(s) 281, 424
BspACI CCGC 2 cut(s) 174, 248
BspCNI CTCAG 1 cut(s) 546
BspFNI CGCG 2 cut(s) 143, 309
BspLI GGNNCC 1 cut(s) 258
BspMAI CTGCAG 1 cut(s) 466
BspPI GGATC 2 cut(s) 289, 432
BsrDI GCAATG 2 cut(s) 33, 215
BsrFI RCCGGY 1 cut(s) 130
BsrI ACTGG 1 cut(s) 509
BssAI RCCGGY 1 cut(s) 130
BssMI GATC 2 cut(s) 281, 424
Bst4CI ACNGT 2 cut(s) 385, 682
BstAPI GCANNNNNTGC 1 cut(s) 682
BstC8I GCNNGC 2 cut(s) 81, 151
BstDEI CTNAG 1 cut(s) 554
BstF5I GGATG 1 cut(s) 644
BstFNI CGCG 2 cut(s) 143, 309
BstH2I RGCGCY 1 cut(s) 623
BstHHI GCGC 3 cut(s) 143, 309, 622
BstKTI GATC 2 cut(s) 284, 427
BstMAI GTCTC 2 cut(s) 234, 356
BstMBI GATC 2 cut(s) 281, 424
BstMCI CGRYCG 1 cut(s) 131
BstMWI GCNNNNNNNGC 2 cut(s) 470, 682
BstNSI RCATGY 1 cut(s) 189
BstPAI GACNNNNGTC 1 cut(s) 612
BstSCI CCNGG 1 cut(s) 267
BstSFI CTRYAG 1 cut(s) 462
BstUI CGCG 2 cut(s) 143, 309
BstV1I GCAGC 1 cut(s) 592
BstV2I GAAGAC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BtsCI GGATG 1 cut(s) 644
BtsI GCAGTG 1 cut(s) 692
BtsIMutI CAGTG 4 cut(s) 502, 547, 687, 692
Cac8I GCNNGC 2 cut(s) 81, 151
CfoI GCGC 3 cut(s) 143, 309, 622
Cfr10I RCCGGY 1 cut(s) 130
CseI GACGC 1 cut(s) 505
CspAI ACCGGT 1 cut(s) 130
CviAII CATG 6 cut(s) 186, 278, 341, 455, 630, 651
DdeI CTNAG 1 cut(s) 554
DpnI GATC 2 cut(s) 283, 426
DpnII GATC 2 cut(s) 281, 424
DraIII CACNNNGTG 1 cut(s) 508
EciI GGCGGA 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 121
Eco88I CYCGRG 1 cut(s) 474
FaeI CATG 6 cut(s) 189, 281, 344, 458, 633, 654
FaqI GGGAC 1 cut(s) 676
FatI CATG 6 cut(s) 185, 277, 340, 454, 629, 650
Fnu4HI GCNGC 1 cut(s) 581
FokI GGATG 1 cut(s) 651
Fsp4HI GCNGC 1 cut(s) 581
GlaI GCGC 3 cut(s) 142, 308, 621
GluI GCNGC 1 cut(s) 581
HaeII RGCGCY 1 cut(s) 623
HapII CCGG 3 cut(s) 11, 131, 268
HgaI GACGC 1 cut(s) 505
HhaI GCGC 3 cut(s) 143, 309, 622
Hin1II CATG 6 cut(s) 189, 281, 344, 458, 633, 654
Hin6I GCGC 3 cut(s) 141, 307, 620
HinP1I GCGC 3 cut(s) 141, 307, 620
HinfI GANTC 2 cut(s) 613, 664
HpaII CCGG 3 cut(s) 11, 131, 268
HphI GGTGA 1 cut(s) 415
Hpy188I TCNGA 4 cut(s) 241, 361, 429, 573
Hpy188III TCNNGA 2 cut(s) 44, 300
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 2 cut(s) 385, 682
HpyCH4V TGCA 8 cut(s) 26, 79, 208, 464, 580, 650, 676, 685
HpyF10VI GCNNNNNNNGC 2 cut(s) 470, 682
HpyF3I CTNAG 1 cut(s) 554
Hsp92II CATG 6 cut(s) 189, 281, 344, 458, 633, 654
HspAI GCGC 3 cut(s) 141, 307, 620
Kzo9I GATC 2 cut(s) 281, 424
LmnI GCTCC 1 cut(s) 117
Lsp1109I GCAGC 1 cut(s) 592
LweI GCATC 2 cut(s) 84, 629
MaeIII GTNAC 2 cut(s) 167, 379
MalI GATC 2 cut(s) 283, 426
MboI GATC 2 cut(s) 281, 424
MboII GAAGA 3 cut(s) 59, 127, 266
MflI RGATCY 1 cut(s) 281
MluCI AATT 2 cut(s) 430, 703
MlyI GAGTC 2 cut(s) 622, 658
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 9 cut(s) 77, 304, 394, 399, 414, 462, 463, 556, 629
MseI TTAA 1 cut(s) 321
MspA1I CMGCKG 1 cut(s) 392
MspI CCGG 3 cut(s) 11, 131, 268
MspR9I CCNGG 1 cut(s) 269
MvnI CGCG 2 cut(s) 143, 309
MwoI GCNNNNNNNGC 2 cut(s) 470, 682
NciI CCSGG 1 cut(s) 269
NdeII GATC 2 cut(s) 281, 424
NlaIII CATG 6 cut(s) 189, 281, 344, 458, 633, 654
NlaIV GGNNCC 1 cut(s) 258
NspI RCATGY 1 cut(s) 189
PciI ACATGT 1 cut(s) 185
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PflFI GACNNNGTC 1 cut(s) 667
PinAI ACCGGT 1 cut(s) 130
PkrI GCNGC 1 cut(s) 582
PleI GAGTC 2 cut(s) 621, 658
PpsI GAGTC 2 cut(s) 621, 658
PscI ACATGT 1 cut(s) 185
PshAI GACNNNNGTC 1 cut(s) 612
PspN4I GGNNCC 1 cut(s) 258
PstI CTGCAG 1 cut(s) 466
PsuI RGATCY 1 cut(s) 281
PsyI GACNNNGTC 1 cut(s) 667
PvuII CAGCTG 1 cut(s) 392
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 1 cut(s) 581
Sau3AI GATC 2 cut(s) 281, 424
SchI GAGTC 2 cut(s) 622, 658
ScrFI CCNGG 1 cut(s) 269
SetI ASST 8 cut(s) 8, 42, 114, 151, 394, 405, 585, 715
SfaNI GCATC 2 cut(s) 84, 629
SfcI CTRYAG 1 cut(s) 462
Sse9I AATT 2 cut(s) 430, 703
SsiI CCGC 2 cut(s) 174, 248
StyD4I CCNGG 1 cut(s) 267
TaaI ACNGT 2 cut(s) 385, 682
TasI AATT 2 cut(s) 430, 703
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 4 cut(s) 509, 547, 687, 692
TseI GCWGC 1 cut(s) 580
TspDTI ATGAA 2 cut(s) 266, 618
TspGWI ACGGA 1 cut(s) 148
TspRI CASTG 4 cut(s) 509, 547, 687, 692
Tth111I GACNNNGTC 1 cut(s) 667
XceI RCATGY 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.